XLOC_028749 (sinup)


Basic Information

Item Value
gene id XLOC_028749
gene name sinup
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 20176143 ~ 20177868 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055724
AGCTGACCAAAAAAACTTTACACCCGCGTCGACACAATAGTATTCGACCGTTTTTATGGCTCACCGTAACAATACACAAACCGACGTCAAACACAATCATTCAGtTTCTTTCACAGATATGCCTTCGGAAACGGATAAGAATTACATAAGCGTATTTAAACGCAAATCACCTTTAACATTATCCCCTAAGCGCAAGTACGCTGTGGCAGTCGTTTCCCCCCTGCAAAAACACGACAGCTGTGAAACTGGGCAATCTGATGTGCTTTTCACTTTTGGCAGTCATTGCAGATGGTCGATCTGGATCAACATCCGCTGCTCATGCAGTCAGATTGCATGAACATGCAAGGCTGCAAAGATCAACTTGTTTTAAGCCTTTCTCTTTTGATGCACGTGATGCAGCAAGAAAAGTTGAGCGTGAGAGGAAACTGAAAGAAATGCGCCAGATACAAGAACAAGTTTGGtgttcaagTTTTAGAGCTCGTCCAGTGAGAAGATACAAACCTCTGAGTAAGCCATCCGTATAGTCCGAGACCTGTTCCCAGAACTGTCAATAATGTGTAgaatttgtcttttttaaatgtttttttttaataaaatactcTCTTTTTA
>TCONS_00055723
AGCTGACCAAAAAAACTTTACACCCGCGTCGACACAATAGTATTCGACCGTTTTTATGGCTCACCGTAACAATACACAAACCGACGTCAAACACAATCATTCAGtTTCTTTCACAGATATGCCTTCGGAAACGGATAAGAATTACATAAGCGTATTTAAACGCAAATCACCTTTAACATTATCCCCTAAGCGCAAGTACGCTGTGGCAGTCGTTTCCCCCCTGCAAAAACACGACAGCTGTGAAACTGTCATTGCAGATGGTCGATCTGGATCAACATCCGCTGCTCATGCAGTCAGATTGCATGAACATGCAAGGCTGCAAAGATCAACTTGTTTTAAGCCTTTCTCTTTTGATGCACGTGATGCAGCAAGAAAAGTTGAGCGTGAGAGGAAACTGAAAGAAATGCGCCAGATACAAGAACAAGTTTGGtgttcaagTTTTAGAGCTCGTCCAGTGAGAAGATACAAACCTCTGAGTAAGCCATCCGTATAGTCCGAGACCTGTTCCCAGAACTGTCAATAATGTGTAgaatttgtcttttttaaatgtttttttttaataaaatactcTCTTTTTA

Function

symbol description
sinup Acts upstream of or within neural plate development. Located in nucleus. Is expressed in shield.

GO:

id name namespace
GO:0001840 neural plate development biological_process
GO:0005634 nucleus cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050913-2 Acts upstream of or within neural plate development. Located in nucleus. Is expressed in shield.

Ensembl:

ensembl_id ENSDARG00000017163

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055724 False 609 nonsense_mediated_decay 0.41 5 20176143 20177868
TCONS_00055723 True 578 mRNA 0.41 5 20176143 20177868

Neighbor

gene id symbol gene type direction distance location
XLOC_028748 lrrc17 coding downstream 20058 20141191 ~ 20156085 (-)
XLOC_028747 cep83 coding downstream 40224 20124863 ~ 20135919 (-)
XLOC_028746 NA coding downstream 52085 20122913 ~ 20124058 (-)
XLOC_028745 si:dkey-159a18.1 coding downstream 57675 20110921 ~ 20118468 (-)
XLOC_028744 fam3c coding downstream 67310 20101992 ~ 20108833 (-)
XLOC_028750 fgl2a coding upstream 826 20178694 ~ 20181964 (-)
XLOC_028751 gsap coding upstream 20426 20198294 ~ 20222182 (-)
XLOC_028752 stk38l coding upstream 46231 20224099 ~ 20235904 (-)
XLOC_028753 cacna2d4a coding upstream 59593 20237461 ~ 20243021 (-)
XLOC_028754 cacna2d4a coding upstream 93595 20271463 ~ 20292853 (-)
XLOC_028741 NA non-coding downstream 128259 20044867 ~ 20047884 (-)
XLOC_028736 NA non-coding downstream 275010 19900015 ~ 19901133 (-)
XLOC_028733 NA non-coding downstream 637053 19534461 ~ 19539090 (-)
XLOC_028731 NA non-coding downstream 806358 19268385 ~ 19369785 (-)
XLOC_028756 BX248410.1 non-coding upstream 218181 20396049 ~ 20396170 (-)
XLOC_028761 NA non-coding upstream 1414376 21592244 ~ 21628998 (-)
XLOC_028762 NA non-coding upstream 1456144 21634012 ~ 21647992 (-)
XLOC_028764 BX569790.2 non-coding upstream 1478377 21656245 ~ 21657106 (-)
XLOC_028767 BX537162.1 non-coding upstream 2058490 22236358 ~ 22237294 (-)

Expression


Co-expression Network