XLOC_028752 (stk38l)


Basic Information

Item Value
gene id XLOC_028752
gene name stk38l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 20224099 ~ 20235904 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055728
GAGGTGGATCAGATTCAACGCAGCTCCGCCGCAGCGCTCAACAAACATCAGCCTGAATAGAGAATAAACATGAGCGATCATTGAGCCTCTCTGCTCTGCCTGCTCAACCCACGGCCATTCACTTGGCTTTATTTCATCCTTATTTCGACCCTCGACTGTCCGGCAAACTGTCTAATCTGGAGGAGGACGGGGAGACTAGCATGGCCATGACGGGAGGCATGGCAGCGCCCCTCCCTATGAGCAACCATACACGTGAGCGCGTGACGGTGGCCAAACTCACGCTGGAGCACTTCTACAGCACCCTGCTCACCCAGCATGAGGAGCGTGAGATGAGgCAGAAGAAGCTGGAGAAGGTGATGGATGAGGAGGGTCTACCTGATGAAGAGAAGAGTATGAGGCGCTCTCTGCATGCTCGTAAGGAGACTGAGTTTCTGCGGCTCAAGAGGACTCGGCTTGGTCTTGATGACTTTGAGTCCCTTAAAGTGATTGGGAGAGGAGCATTTGGAGAGGTGCGGCTTGTTCAGAAAAAAGACACGGGTCACATTTATGCCATGAAGATCCTCAGAAAAGCAGACATGCTAGAAAAAGAGCAGGTGGCTCATATCCGCGCCGAGAGAGATATCCTGGTAGAGGCCGATGGCGCCTGGGTAGTAAAGATGTTCTACAGCTTTCAAGATAAACGCAATCTGTACCTCATCATGGAGTTTCTGCCTGGAGGAGATATGATGACTCTGCTGATGAAGAAAGACACGCTGTCGGAAGAAGCCACGCAGTTTTATATCGCAGAGACGGTTTTGGCTATTGACTCCATTCACCAGCTGGGCTTCATTCACCGAGACATCAAACCTGACAACCTGCTGCTGGACTCACGGGGTCACGTCAAACTGTCTGACTTTGGCCTCTGCACAGGTTTGAAGAAGGCCCATCGGACTGAATTTTACAGGAATCTCACACACAACCCTCCCAGTGACTTCTCCTTTCAAAACATGAATTCAAAGCGGAAAGCAGAAACATGGAAGAAGAACCGAAGGCAGCTGGCATATTCAACAGTCGGTACGCCAGACTATATCGCCCCTGAGGTCTTTATGCAGACAGGCTACAATAAGCTGTGTGACTGGTGGTCTCTTGGAGTCATAATGTATGAAATGTTGATAGGCTACCCACCTTTCTGTTCCGAGACGCCACAGGAAACCTACAGGAAGGTCATGAACTGGCGAgaaacactaactttccctcctGAAGTCCCCATTTCAGAGAGAGCCAAGGAATTGATCCTTAGGTATTGCACAGATGCAGAAAACCGGATTGGATCAGGAAGTGTGGATGAAATCAAATCTCATCCCTTTTTTGAGTCTGTAGACTGGGAGCATATCAGAGAGAGACCTGCTGCTATTTCCATAGACATCAAGAGCATTGACGATACGTCCAACTTTGATGACTTTCCAGAGTCAGACATTCTGCAGCCAGTAGCAAATGTAACAGAATCAGACTTCAAGTCCAAGGACTGGGTTTTCCTCAACTACACCTACAAACGCTTCGAGGGCTTGACACAGCGTGGCACCATCCCTACTTACATGAAGGCGGGCAAGGCGTGAAACTGGCACAGATGGTCTGGAAGAGGAGGATTAGAATGTAAATGACAATTCAaatgcagatttctgcagatgaAAAGCTTATGCACTGCCGCTTTGTGCTACACAGTAGACCTGTTCTCAGAGGAGTCCATGGTGacgataaaaagaaaaaaaaaa
>TCONS_00055729
GAGGTGGATCAGATTCAACGCAGCTCCGCCGCAGCGCTCAACAAACATCAGCCTGAATAGAGAATAAACATGAGCGATCATTGAGCCTCTCTGCTCTGCCTGCTCAACCCACGGCCATTCACTTGGCTTTATTTCATCCTTATTTCGACCCTCGACTGTCCGGCAAACTGTCTAATCTGGAGGAGGACGGGGAGACTAGCATGGCCATGACGGGAGGCATGGCAGCGCCCCTCCCTATGAGCAACCATACACGTGAGCGCGTGACGGTGGCCAAACTCACGCTGGAGCACTTCTACAGCACCCTGCTCACCCAGCATGAGGAGCGTGAGATGAGgCAGAAGAAGCTGGAGAAGGTGATGGATGAGGAGGGTCTACCTGATGAAGAGAAGAGTATGAGGCGCTCTCTGCATGCTCGTAAGGAGACTGAGTTTCTGCGGCTCAAGAGGACTCGGCTTGGTCTTGATGACTTTGAGTCCCTTAAAGTGATTGGGAGAGGAGCATTTGGAGAGGTGCGGCTTGTTCAGAAAAAAGACACGGGTCACATTTATGCCATGAAGATCCTCAGAAAAGCAGACATGCTAGAAAAAGAGCAGGTGGCTCATATCCGCGCCGAGAGAGATATCCTGGTAGAGGCCGATGGCGCCTGGGTAGTAAAGATGTTCTACAGCTTTCAAGATAAACGCAATCTGTACCTCATCATGGAGTTTCTGCCTGGAGGAGATATGATGACTCTGCTGATGAAGAAAGACACGCTGTCGGAAGAAGCCACGCAGTTTTATATCGCAGAGACGGTTTTGGCTATTGACTCCATTCACCAGCTGGGCTTCATTCACCGAGACATCAAACCTGACAACCTGCTGCTGGACTCACGGGGTCACGTCAAACTGTCTGACTTTGGCCTCTGCACAGGTTTGAAGAAGGCCCATCGGACTGAATTTTACAGGAATCTCACACACAACCCTCCCAGTGACTTCTCCTTTCAAAACATGAATTCAAAGCGGAAAGCAGAAACATGGAAGAAGAACCGAAGGCAGCTGGCATATTCAACAGTCGGTACGCCAGACTATATCGCCCCTGAGGTCTTTATGCAGACAGGCTACAATAAGCTGTGTGACTGGTGGTCTCTTGGAGTCATAATGTATGAAATGTTGATAGGCTACCCACCTTTCTGTTCCGAGACGCCACAGGAAACCTACAGGAAGGTCATGAACTGGCGAgaaacactaactttccctcctGAAGTCCCCATTTCAGAGAGAGCCAAGGAATTGATCCTTAGGTATTGCACAGATGCAGAAAACCGGATTGGATCAGGAAGTGTGGATGAAATCAAATCTCATCCCTTTTTTGAGTCTGTAGACTGGGAGCATATCAGAGAGAGACCTGCTGCTATTTCCATAGACATCAAGAGCATTGACGATACGTCCAACTTTGATGACTTTCCAGAGTCAGACATTCTGCAGCCAGCAAATGTAACAGAATCAGACTTCAAGTCCAAGGACTGGGTTTTCCTCAACTACACCTACAAACGCTTCGAGGGCTTGACACAGCGTGGCACCATCCCTACTTACATGAAGGCGGGCAAGGCGTGAAACTGGCACAGATGGTCTGGAAGAGGAGGATTAGAATGTAAATGACAATTCAaatgcagatttctgcagatgaAAAGCTTATGCACTGCCGCTTTGTGCTACACAGTAGACCTGTTCTCAGAGGAGTCCATGGTGacg
>TCONS_00055730
TTCAGACTAGCATGGCCATGACGGGAGGCATGGCAGCGCCCCTCCCTATGAGCAACCATACACGTGAGCGCGTGACGGTGGCCAAACTCACGCTGGAGCACTTCTACAGCACCCTGCTCACCCAGCATGAGGAGCGTGAGATGAGgCAGAAGAAGCTGGAGAAGGTGATGGATGAGGAGGGTCTACCTGATGAAGAGAAGAGTATGAGGCGCTCTCTGCATGCTCGTAAGGAGACTGAGTTTCTGCGGCTCAAGAGGACTCGGCTTGGTCTTGATGACTTTGAGTCCCTTAAAGTGATTGGGAGAGGAGCATTTGGAGAGGTGCGGCTTGTTCAGAAAAAAGACACGGGTCACATTTATGCCATGAAGATCCTCAGAAAAGCAGACATGCTAGAAAAAGAGCAGGTGGCTCATATCCGCGCCGAGAGAGATATCCTGGTAGAGGCCGATGGCGCCTGGGTAGTAAAGATGTTCTACAGCTTTCAAGATAAACGCAATCTGTACCTCATCATGGAGTTTCTGCCTGGAGGAGATATGATGACTCTGCTGATGAAGAAAGACACGCTGTCGGAAGAAGCCACGCAGTTTTATATCGCAGAGACGGTTTTGGCTATTGACTCCATTCACCAGCTGGGCTTCATTCACCGAGACATCAAACCTGACAACCTGCTGCTGGACTCACGGGGTCACGTCAAACTGTCTGACTTTGGCCTCTGCACAGGTTTGAAGAAGGCCCATCGGACTGAATTTTACAGGAATCTCACACACAACCCTCCCAGTGACTTCTCCTTTCAAAACATGAATTCAAAGCGGAAAGCAGAAACATGGAAGAAGAACCGAAGGCAGCTGGCATATTCAACAGTCGGTACGCCAGACTATATCGCCCCTGAGGTCTTTATGCAGACAGGCTACAATAAGCTGTGTGACTGGTGGTCTCTTGGAGTCATAATGTATGAAATGTTGATAGGCTACCCACCTTTCTGTTCCGAGACGCCACAGGAAACCTACAGGAAGGTCATGAACTGGCGAgaaacactaactttccctcctGAAGTCCCCATTTCAGAGAGAGCCAAGGAATTGATCCTTAGGTATTGCACAGATGCAGAAAACCGGATTGGATCAGGAAGTGTGGATGAAATCAAATCTCATCCCTTTTTTGAGTCTGTAGACTGGGAGCATATCAGAGAGAGACCTGCTGCTATTTCCATAGACATCAAGAGCATTGACGATACGTCCAACTTTGATGACTTTCCAGAGTCAGACATTCTGCAGCCAGCAAATGTAACAGAATCAGACTTCAAGTCCAAGGACTGGGTTTTCCTCAACTACACCTACAAACGCTTCGAGGGCTTGACACAGCGTGGCACCATCCCTACTTACATGAAGGCGGGCAAGGCGTGA

Function

symbol description
stk38l Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Is expressed in several structures, including adaxial cell; intestinal bulb primordium; liver and biliary system; olfactory system; and yolk syncytial layer. Orthologous to human STK38L (serine/threonine kinase 38 like).

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-798 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Is expressed in several structures, including adaxial cell; intestinal bulb primordium; liver and biliary system; olfactory system; and yolk syncytial layer. Orthologous to human STK38L (serine/threonine kinase 38 like).

Ensembl:

ensembl_id ENSDARG00000045482

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055728 False 1751 mRNA 0.49 14 20224099 20235904
TCONS_00055729 False 1730 mRNA 0.49 14 20224117 20235904
TCONS_00055730 True 1403 mRNA 0.49 13 20224255 20232974

Neighbor

gene id symbol gene type direction distance location
XLOC_028751 gsap coding downstream 1917 20198294 ~ 20222182 (-)
XLOC_028750 fgl2a coding downstream 42135 20178694 ~ 20181964 (-)
XLOC_028749 sinup coding downstream 46231 20176143 ~ 20177868 (-)
XLOC_028748 lrrc17 coding downstream 68014 20141191 ~ 20156085 (-)
XLOC_028747 cep83 coding downstream 88180 20124863 ~ 20135919 (-)
XLOC_028753 cacna2d4a coding upstream 1557 20237461 ~ 20243021 (-)
XLOC_028754 cacna2d4a coding upstream 35559 20271463 ~ 20292853 (-)
XLOC_028755 dcp1b coding upstream 66928 20302832 ~ 20314796 (-)
XLOC_028756 BX248410.1 coding upstream 160145 20396049 ~ 20396170 (-)
XLOC_028757 napepld coding upstream 244495 20480399 ~ 20486005 (-)
XLOC_028746 NA non-coding downstream 100041 20122913 ~ 20124058 (-)
XLOC_028741 NA non-coding downstream 176215 20044867 ~ 20047884 (-)
XLOC_028736 NA non-coding downstream 322966 19900015 ~ 19901133 (-)
XLOC_028733 NA non-coding downstream 685009 19534461 ~ 19539090 (-)
XLOC_028731 NA non-coding downstream 854314 19268385 ~ 19369785 (-)
XLOC_028761 NA non-coding upstream 1356340 21592244 ~ 21628998 (-)
XLOC_028762 NA non-coding upstream 1398108 21634012 ~ 21647992 (-)
XLOC_028764 BX569790.2 non-coding upstream 1420341 21656245 ~ 21657106 (-)
XLOC_028767 BX537162.1 non-coding upstream 2000454 22236358 ~ 22237294 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000019_05409721_05417314 STK38L coding CI01000019 null 5409600 ~ 5417694 (+)