Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_028753 |
| gene name | cacna2d4a |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007115.7 |
| NCBI id | CM002888.2 |
| chromosome length | 78093715 |
| location | 20237461 ~ 20243021 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| cacna2d4a | Predicted to enable voltage-gated calcium channel activity. Acts upstream of or within retinal cone cell development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Is expressed in retinal inner nuclear layer and retinal outer nuclear layer. Orthologous to human CACNA2D4 (calcium voltage-gated channel auxiliary subunit alpha2delta 4). |
| id | name | namespace |
|---|---|---|
| GO:0046549 | retinal cone cell development | biological_process |
| GO:0005891 | voltage-gated calcium channel complex | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005245 | voltage-gated calcium channel activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-041210-213 | Predicted to enable voltage-gated calcium channel activity. Acts upstream of or within retinal cone cell development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Is expressed in retinal inner nuclear layer and retinal outer nuclear layer. Orthologous to human CACNA2D4 (calcium voltage-gated channel auxiliary subunit alpha2delta 4). |
| ensembl_id | ENSDARG00000103810 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00055731 | True | 1469 | mRNA | 0.39 | 8 | 20237461 | 20243021 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_028752 | stk38l | coding | downstream | 1557 | 20224099 ~ 20235904 (-) |
| XLOC_028751 | gsap | coding | downstream | 15279 | 20198294 ~ 20222182 (-) |
| XLOC_028750 | fgl2a | coding | downstream | 55497 | 20178694 ~ 20181964 (-) |
| XLOC_028749 | sinup | coding | downstream | 59593 | 20176143 ~ 20177868 (-) |
| XLOC_028748 | lrrc17 | coding | downstream | 81376 | 20141191 ~ 20156085 (-) |
| XLOC_028754 | cacna2d4a | coding | upstream | 28442 | 20271463 ~ 20292853 (-) |
| XLOC_028755 | dcp1b | coding | upstream | 59811 | 20302832 ~ 20314796 (-) |
| XLOC_028756 | BX248410.1 | coding | upstream | 153028 | 20396049 ~ 20396170 (-) |
| XLOC_028757 | napepld | coding | upstream | 237378 | 20480399 ~ 20486005 (-) |
| XLOC_028758 | rassf8b | coding | upstream | 264084 | 20507105 ~ 20521441 (-) |
| XLOC_028746 | NA | non-coding | downstream | 113403 | 20122913 ~ 20124058 (-) |
| XLOC_028741 | NA | non-coding | downstream | 189577 | 20044867 ~ 20047884 (-) |
| XLOC_028736 | NA | non-coding | downstream | 336328 | 19900015 ~ 19901133 (-) |
| XLOC_028733 | NA | non-coding | downstream | 698371 | 19534461 ~ 19539090 (-) |
| XLOC_028731 | NA | non-coding | downstream | 867676 | 19268385 ~ 19369785 (-) |
| XLOC_028761 | NA | non-coding | upstream | 1349223 | 21592244 ~ 21628998 (-) |
| XLOC_028762 | NA | non-coding | upstream | 1390991 | 21634012 ~ 21647992 (-) |
| XLOC_028764 | BX569790.2 | non-coding | upstream | 1413224 | 21656245 ~ 21657106 (-) |
| XLOC_028767 | BX537162.1 | non-coding | upstream | 1993337 | 22236358 ~ 22237294 (-) |
