XLOC_028754 (cacna2d4a)



Basic Information


Item Value
gene id XLOC_028754
gene name cacna2d4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 20271463 ~ 20292853 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00055732
gGTTCAACAGTGGGCCAATAACTTTGGAAAACAGCTTATGGCCTTATCAAACAGATACTCAGGTGCTCAACTCTTACAAAAGAAATATAAAGAAGTGGAACCCATCGTCAAGATGGAGGAGATCGATGGTTTAAAAATGGTGAAGGAATTTGCTGAGGAAATGGAGAACATGCTGGGCAGAAAAATGAAATCAGTTAAGAGAATGGCAGAGACAGCAGAAGACGCAGATTTTTATCATGAATTTAATGCCACATTAGAGTTTGACTACTACAATTCCATGTTGATTAACACATTAAATGAAGATGGAAACAACATAGAGCTGGGGGGTGAATTTCCTTTGGAGGAGAATGAACACTTCAACAATCTGCCTGTCAATACGCAGCAAAGCGTCGTACAAGTGCCCACAAATGTTTATAACAAAGATCCTGATATCCTGAACGGGGTGTTTATGTCAGAAGCACTGAATGACATATTTATCAGTAACTTTGAGAAGGACCCGACTCTAACCTGGCAGTACTTCGGCAGTTCAACTGGATTCTTTAGACTTTACCCAGgtATTAAGTGGACACCTGATGAAAATGGAGTTGTCACTTTTGATGGAAGGAATCGCAACTGGTACATTCAAGCAGCCACATCTCCTAAAGACATCATTATCGCTGTGGACATCAGCGGGAGTATGAAGGGTTTGAGACTCACCATCGCAAAACACACCATCAACACCATTCTAGACACACTAGGCGAAAACGACTTTGTCAACGTCATTGCGTACAGTGATTATGTCCAATATGTAGAGCCCTGTTTTAAAGGCACACTGGTACAAGCTGATCTGGATAACCGTGAGCACTTTAAGCTTTTGGTGCAGGAGTTGCAGGTAAAAGGTGAAGGAAAGGTGAAGAAAGCCATGAAAGAGTCCTTTAAGATTCTGAATGAGGCAGCAGCAGAAGGCAGGGGTAGTTTATGTAATCAGGCTATCATGCTGATCACTGATGGAGCCATGGAGGATTTCCAGCAGGTGTTTGAGGAGTTCAATTGGCCAGATCGCAAGGTGCGCGTGTTCACGTATCTGATTGGACGAGAGCTTACATTTGCCAGCAATGTCAAATGGATTGCTTGCAATAATAAAGGTTACTACACTCACATCTCTACACTGGCGGATGTACAGGAGAATGTGATGGAATATCTTCATGTGCTGAGCAGACCAATGGTCATCAACCATGATCATGACATCATTTGGACAGAGGCTTACATGGACAGTGTGGCCGAGAGTTTGCTGTTGATGACCTCTGTAGCCATGCCTGTGTTCAGCAAGAAAGAAGAAACACTCTCTCATGGCATCCTCCTCGGTGTGGTTGGCACTGATGTTCCCTTGAAGGAGCTCATGAGATTGGCTCCTCGATACAAGCTGGGGGTTCACGGCTATGCATTCTTAAACACTAATAATGGTTATATACTCTCTCATCCTGACCTTCGACCTCTGTATAAAGATGGCAAGAAGCTGAAGCCAAAGCCGAACTATAACAGTGTGGATTTATCAGAGGTGGAGTGGGAGGATACAGAAGATGCACTGAGAACGGCGATGGTAAAAGGGGAAACTGGGACAATCTCTCTGGACGTCAGAGCAACAGTAGAAAAAGGAAAAAGAGTTGTGTTCctgaaaaatgaatatttttatactaCCATCAATGAGACGCCATTTAGTCTTGGGATTGTACTTACCAACGGTCACGGGAAGAATGTTTTCATCGGAAATGTTTCAGTTGAAGAAGGCCTACATGACCTGACTGCGTCTGATGTCAGTATTGCTCAAGAATGgACATACTGTGAGACAGACATCGATCCACATCATCGCAAATTGACGCAGCTTCAGGCCGTGGTTCGGTATTTAACAGGAAAAGAACCAGATCTGGAATGTGATGAAAGGCTTCTGCAGCAGACTCTGTTTGACGCAGTGGTCACAGCTCCTATGGAAGCCTATTGGACTGCACTGCTGCTCAACGCCTCCGGTATTGATGGGGGAGTGGAGACAGCGTTCCTGGGCACGCGCTCTGGCCTCATGAGGATGATCAGATATGCTGGCGTAGAGAAGCGTGTGGCGAAAAAATTCTTAACTGCATCAGATAAGGAGAATATTTTTACTCTAGACCATTTCCCTGTTTGGTATCGGCGTGCGGCAGAAAATCCAGCTGGCCGCTTTTTGTACTACGTTCCTACAGAGGACAACTCAGGAG
>TCONS_00055733
ATGTCTAATTTccttgtttgtgttttgaacaggGTTCAACAGTGGGCCAATAACTTTGGAAAACAGCTTATGGCCTTATCAAACAGATACTCAGGTGCTCAACTCTTACAAAAGAAATATAAAGAAGTGGAACCCATCGTCAAGATGGAGGAGATCGATGGTTTAAAAATGGTGAAGGAATTTGCTGAGGAAATGGAGAACATGCTGGGCAGAAAAATGAAATCAGTTAAGAGAATGGCAGAGACAGCAGAAGACGCAGATTTTTATCATGAATTTAATGCCACATTAGAGTTTGACTACTACAATTCCATGTTGATTAACACATTAAATGAAGATGGAAACAACATAGAGCTGGGGGGTGAATTTCCTTTGGAGGAGAATGAACACTTCAACAATCTGCCTGTCAATACGCAGCAAAGCGTCGTACAAGTGCCCACAAATGTTTATAACAAAGATCCTGATATCCTGAACGGGGTGTTTATGTCAGAAGCACTGAATGACATATTTATCAGTAACTTTGAGAAGGACCCGACTCTAACCTGGCAGTACTTCGGCAGTTCAACTGGATTCTTTAGACTTTACCCAGgtATTAAGTGGACACCTGATGAAAATGGAGTTGTCACTTTTGATGGAAGGAATCGCAACTGGTACATTCAAGCAGCCACATCTCCTAAAGACATCATTATCGCTGTGGACATCAGCGGGAGTATGAAGGGTTTGAGACTCACCATCGCAAAACACACCATCAACACCATTCTAGACACACTAGGCGAAAACGACTTTGTCAACGTCATTGCGTACAGTGATTATGTCCAATATGTAGAGCCCTGTTTTAAAGGCACACTGGTACAAGCTGATCTGGATAACCGTGAGCACTTTAAGCTTTTGGTGCAGGAGTTGCAGGTAAAAGGTGAAGGAAAGGTGAAGAAAGCCATGAAAGAGTCCTTTAAGATTCTGAATGAGGTAAAAGGCAGGGGTAGTTTATGTAATCAGGCTATCATGCTGATCACTGATGGAGCCATGGAGGATTTCCAGCAGGTGTTTGAGGAGTTCAATTGGCCAGATCGCAAGGTGCGCGTGTTCACGTATCTGATTGGACGAGAGCTTACATTTGCCAGCAATGTCAAATGGATTGCTTGCAATAATAAAGGTTACTACACTCACATCTCTACACTGGCGGATGTACAGGAGAATGTGATGGAATATCTTCATGTGCTGAGCAGACCAATGGTCATCAACCATGATCATGACATCATTTGGACAGAGGCTTACATGGACAGTGTGCTTTTTAACACACAGGCCGAGAGTTTGCTGTTGATGACCTCTGTAGCCATGCCTGTGTTCAGCAAGAAAGAAGAAACACTCTCTCATGGCATCCTCCTCGGTGTGGTTGGCACTGATGTTCCCTTGAAGGAGCTCATGAGATTGGCTCCTCGATACAAGGTGCCTTAA

Function


symbol description
cacna2d4a Predicted to enable voltage-gated calcium channel activity. Acts upstream of or within retinal cone cell development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Is expressed in retinal inner nuclear layer and retinal outer nuclear layer. Orthologous to human CACNA2D4 (calcium voltage-gated channel auxiliary subunit alpha2delta 4).

GO:

id name namespace
GO:0046549 retinal cone cell development biological_process
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005245 voltage-gated calcium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-213 Predicted to enable voltage-gated calcium channel activity. Acts upstream of or within retinal cone cell development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Is expressed in retinal inner nuclear layer and retinal outer nuclear layer. Orthologous to human CACNA2D4 (calcium voltage-gated channel auxiliary subunit alpha2delta 4).

Ensembl:

ensembl_id ENSDARG00000026855

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00055732 False 2228 mRNA 0.45 24 20271463 20292821
TCONS_00055733 True 1452 mRNA 0.43 14 20274355 20292853
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Neighbor


gene id symbol gene type direction distance location
XLOC_028753 cacna2d4a coding downstream 28442 20237461 ~ 20243021 (-)
XLOC_028752 stk38l coding downstream 35559 20224099 ~ 20235904 (-)
XLOC_028751 gsap coding downstream 49281 20198294 ~ 20222182 (-)
XLOC_028750 fgl2a coding downstream 89499 20178694 ~ 20181964 (-)
XLOC_028749 sinup coding downstream 93595 20176143 ~ 20177868 (-)
XLOC_028755 dcp1b coding upstream 9979 20302832 ~ 20314796 (-)
XLOC_028756 BX248410.1 coding upstream 103196 20396049 ~ 20396170 (-)
XLOC_028757 napepld coding upstream 187546 20480399 ~ 20486005 (-)
XLOC_028758 rassf8b coding upstream 214252 20507105 ~ 20521441 (-)
XLOC_028759 pawr coding upstream 1030153 21323006 ~ 21466825 (-)
XLOC_028746 NA non-coding downstream 147405 20122913 ~ 20124058 (-)
XLOC_028741 NA non-coding downstream 223579 20044867 ~ 20047884 (-)
XLOC_028736 NA non-coding downstream 370330 19900015 ~ 19901133 (-)
XLOC_028733 NA non-coding downstream 732373 19534461 ~ 19539090 (-)
XLOC_028731 NA non-coding downstream 901678 19268385 ~ 19369785 (-)
XLOC_028761 NA non-coding upstream 1299391 21592244 ~ 21628998 (-)
XLOC_028762 NA non-coding upstream 1341159 21634012 ~ 21647992 (-)
XLOC_028764 BX569790.2 non-coding upstream 1363392 21656245 ~ 21657106 (-)
XLOC_028767 BX537162.1 non-coding upstream 1943505 22236358 ~ 22237294 (-)

Expression


Expression of XLOC_028754(cacna2d4a) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 5.
End of interactive chart.

Expression of XLOC_028754(cacna2d4a) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 5.
End of interactive chart.

Co-expression Network