XLOC_028755 (dcp1b)


Basic Information

Item Value
gene id XLOC_028755
gene name dcp1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 20302832 ~ 20314796 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055734
GCAAACATGGCGATGACGGCAGCGGGACGAGAGTTAGACAAGTGAAATAAAGCCTTATATTCTTGTTTACTGCTTTGCACATCCCTGAAAACATACACAAGGAGACCGGATCGTTAAATAAGCTGTTTAAGTGTTGTTTTTACAGAGTtaaattttgctttttaaaggtATTTTAGGATTTGTGCCGTATTTTAAGTGGAGAAGCGAGCTGGAGCCATGACTGCAAGCACAGGTGGCGGTGGGAGCTGTTTATCAATGAGTCTGTCTGCTCTGAAGAGACTCGACCCCTACATCAGCAGCATCACAGACCTAGCCAGCCAAGTAGCACTCTACACCTTTAACAACAACACCAATGAATGGGAAAAGACAAATGTGGAGGGAACTCTGTTTGTCTATAGCAGGCTTGCCTCCCCCAGGCATGGCTTTACCATCCTCAATCGCTTGAGTATGGACAACCTGACTGAACCAATCACTAAGGACTTGGATTTCCAGCTGCAGCATCCATTTCTCCTGTACAGGAACGCTCGCTTGTCCATCTATGGAATCTGGTTCTATGATAAAGAGGACTGTCAGCGTATAGCAGAACTCATGAAGAATTTGGCAGGGCAGGAACAGCAGTTACAGGCGCAAATTGCTACTGGCTGTCTCTCTCCGAGATCAGCAGAGCAGGGTGTGGATATAATGCAGATGCTCACTAAAGCACGAAACGACTATGACAAGGGAAAACTCAGTGAGCCAAAGGAAATTGGCAGTGGTGGGATCATCTACGGTCAAACCCCCCATCTGATCAAACCCATTCCCCTCAAACCAGCACAGGACACACACATTCAGGCACACACTCAGCATGATGCTGAGATGGACTCAAAACATCTGTCAGTTGTCACACTGTttggtgctcagccaaaaccagACTTGGGCTCAACACAGCCCAGCTTATCTGTTGGCAGGATGGGCCCAGCAAGGTCTTCAGTGGCCCGCTCTCTGTCTTATGATGACCCTTCTCCAGCAGGTGGTGCTGTGGTGTCCAGCACCCCCATGCAGCACTGTCCAGCCATCCACAAGCTCATGTCTGGTTCACTGCTGCAGCCTCTATCTGAATCCCCAGAGAGCCGCCTGTGTGAAAACGGAGCAGTCCAGATCCAGCCTGACCCAATACAAAAACTGTTAATGAACCCTCCTCCTGTGGCAGGGACTACAGTGATGCCCTCCATCCAATTAAAGCAGGGGGAAGTTGGCATGGGGCCCCAAATCCACTCCATGGCGAAGCCCTCGGGGCCCTTTCCAGCACAGCATCTGTTTGTCCCAAATAAAGTGCCCTCTGCTGGAGTAACAAGTAATGTGGTTTCACCTCATGAGCTTCTACAGAAGCTCACATTAGTGCAGCAGGAGCAAGAGCTGCATCCTCAACAGGAGGTCCTACAGCCAGGTCTGACCACCAGCAGCTCCAATCTCAGCAAAACCAATCTGACACAGGTGATGTCACCACAGCGTATCCCAGCGACTGTAGCCCCCACCCTCCTTCTTTCCCCCAGTGTGTTTGCTCAAACTAAAGTAACAAGAGCAGATCCAGAACCAGTTGAATCAAGAGCACTTAGCAAGTCTCAGCTACAGGCCACATTGCTCCATCTCATCAAGAATGATGCTTCATTCCTTGACACCATCTATGAAGCATATATCTCCCGTCTCACAACAGACTCCAGCTCAAAACCTTTTTGAAGCAGGAAAACCACCTGAACCATATACATGTAGCTTTCACTCTCTGAACACATATCTGCATACCATCTCAGGACCACCCTGCTGTTTCGAGTGTAGCATCTAATGAGTTGAACTTCCACAAAATAATCTAATCTGAATGATAAATGCCACATCACCTTtgaattttacattattttttcacGAGCTGCAATCTTAAGCATCTTAATATTTTAACAAAGGAGAATTGCATAATGGGTTTTATGTTTACTTTTTAGATAATGACAGGAAATGTGCTGTCTGTTCAAATCAGAGCGTAAAGACTTTTAATGAAGGCATTTTTACTTTTGCATATCTGAAATACACCCccgaaagaaactcaaaaacagAACTTGGCCTCAAATATAATAGGAATAACATGATGAATGGCATGACAATTCATGTAAATCTTGGTCTGTACCAAATGACAGGAAATCACCCTCATCATTTTACAAGCCAGCAGGAATAGTTTTCATGTTAGTCaactctttaaaatgtttaaatgtacaaacaaaagtgtacatatatatattctatttttcTATGGTGTTATTTTTGTTCTTATATCAACATGCTGGAATGTTTATAAGTtcctttaaaaaatcttaaacctTAAAATTAAGACCAAGAGTGTTTTCCAGTCAGCAGGTCAGGATTAAAACCAATTAAAAGTTATTCTATTtgttttacataattaaaatattatcccACACCCC
>TCONS_00055735
GTTTTTATTTACAGAAGCGAGCTGGAGCCATGACTGCAAGCACAGGTGGCGGTGGGAGCTGTTTATCAATGAGTCTGTCTGCTCTGAAGAGACTCGACCCCTACATCAGCAGCATCACAGACCTAGCCAGCCAAGTAGCACTCTACACCTTTAACAACAACACCAATGAATGGGAAAAGACAAATGTGGAGGGAACTCTGTTTGTCTATAGCAGGCTTGCCTCCCCCAGGCATGGCTTTACCATCCTCAATCGCTTGAGTATGGACAACCTGACTGAACCAATCACTAAGGACTTGGATTTCCAGCTGCAGCATCCATTTCTCCTGTACAGGAACGCTCGCTTGTCCATCTATGGAATCTGGTTCTATGATAAAGAGGACTGTCAGCGTATAGCAGAACTCATGAAGAAGTATGTTTTGGCAGGGCAGGAACAGCAGTTACAGGCGCAAATTGCTACTGGCTGTCTCTCTCCGAGATCAGCAGAGCAGGGTGTGGATATAATGCAGATGCTCACTAAAGCACGAAACGACTATGACAAGGGAAAACTCAGTGAGCCAAAGGAAATTGGCAGTGGTGGGATCATCTACGGTCAAACCCCCCATCTGATCAAACCCATTCCCCTCAAACCAGCACAGGACACACACATTCAGGATGCTGAGATGGACTCAAAACATCTGTCAGTTGTCACACTGTttggtgctcagccaaaaccagACTTGGGCTCAACACAGCCCAGCTTATCTGTTGGCAGGATGGGCCCAGCAAGGTCTTCAGTGGCCCGCTCTCTGTCTTATGATGACCCTTCTCCAGCAGGTGGTGCTGTGGTGTCCAGCACCCCCATGCAGCACTGTCCAGCCATCCACAAGCTCATGTCTGGTTCACTGCTGCAGCCTCTATCTGAATCCCCAGAGAGCCGCCTGTGTGAAAACGGAGCAGTCCAGATCCAGCCTGACCCAATACAAAAACTGTTAATGAACCCTCCTCCTGTGGCAGGGACTACAGTGATGCCCTCCATCCAATTAAAGCAGGGGGAAGTTGGCATGGGGCCCCAAATCCACTCCATGGCGAAGCCCTCGGGGCCCTTTCCAGCACAGCATCTGTTTGTCCCAAATAAAGTGCCCTCTGCTGGAGTAACAAGTAATGTGGTTTCACCTCATGAGCTTCTACAGAAGCTCACATTAGTGCAGCAGGAGCAAGAGCTGCATCCTCAACAGGAGGTCCTACAGCCAGGTCTGACCACCAGCAGCTCCAATCTCAGCAAAACCAATCTGACACAGGTGATGTCACCACAGCGTATCCCAGCGACTGTAGCCCCCACCCTCCTTCTTTCCCCCAGTGTGTTTGCTCAAACTAAAGTAACAAGAGCAGATCCAGAACCAGTTGAATCAAGAGCACTTAGCAAGTCTCAGCTACAGGCCACATTGCTCCATCTCATCAAGAATGATGCTTCATTCCTTGACACCATCTATGAAGCATATATCTCCCGTCTCACAACAGACTCCAGCTCAAAACCTTTTTGAAGCAGGAAAACCACCTGAACCATATACATGTAGCTTTCACTCTCTGAACACATATCTGCATACCATCTCAGGACCACCCTGCTGTTTCGAGTGTAGCATCTAATGAGTTGAACTTCCACAAAATAATCTAATCTGAATGATAAATGCCACATCACCTTtgaatttta
>TCONS_00055736
CCCTTTGCGCGCGCTCGGCGATTAGCTCGTTCTGTCTTCTTGACAGCGCAAACATGGCGATGACGGCAGCGGGACGAGAGTTAGACAAGTGAAATAAAGCCTTATATTCTTGTTTACTGCTTTGCACATCCCTGAAAACATACACAAGGAGACCGGATCGTTAAATAAGCTGTTTAAGTGTTGTTTTTACAGAGTtaaattttgctttttaaaggtATTTTAGGATTTGTGCCGTATTTTAAGTGGAGGTAAGTTTAACTCCAGTACGATGTATAAAAGAGCAACCGCAGCTCACCAAGGCCTTATTTAGTTCACTCGTAAACTTATGAATGTATGATGtataccattttttaaaaagtaaaaacactATTAATGCAGGGTTAGGGATATTAACAAACCGCTCAAGCGCAGTGTTAAACTTGTGTACGATGTCCCGCAGCGCTTGTGCTATGAACATCAACGGTGACCTAACCGGTCAAAGTGACCAGAATAAATACAGACGAGGATGAGGTGGACTCTTTAGACTCGGGCCAGTATATAACCACTCGTTATACCATAGTAACTACATGTAAGGGTTAGCTTGTCAACCACATTTTAGTGAATGCGAGtttaagaaatgtatttttatgcacacacatttttactcattgtataaattaatatataaatgaatgctTATAACTAAGAATAACGAATTTAGTTACATTTTGTAATCTTGCAAAGGTCTGACGCATTAATTTCTGTACACAGTagacaacatttgaagtggatcaaaacctttcatcaaagttatcccaaaactattgaacaacacccacatatagatgatggatggatggatggatagatagatagatagatagatagataaaacaataCTATATTTGTTTGGTAAACATGCAAACTGAACCAAAAGACCCATACAATAGAGGTGTACAGTAATTACATGTTAATAAAGAGTAATTACATCTTAATAAAGAGCATAAGTTTTTATTTACAGAAGCGAGCTGGAGCCATGACTGCAAGCACAGGTGGCGGTGGGAGCTGTTTATCAATGAGTCTGTCTGCTCTGAAGAGACTCGACCCCTACATCAGCAGCATCACAGACCTAGCCAGCCAAGTAGCACTCTACACCTTTAACAACAACACCAATGAATGGGAAAAGACAAATGTGGAGGGAACTCTGTTTGTCTATAGCAGGCTTGCCTCCCCCAGGCATGGCTTTACCATCCTCAATCGCTTGAGTATGGACAACCTGACTGAACCAATCACTAAGGACTTGGATTTCCAGCTGCAGCATCCATTTCTCCTGTACAGGAACGCTCGCTTGTCCATCTATGGAATCTGGTTCTATGATAAAGAGGACTGTCAGCGTATAGCAGAACTCATGAAGAATTTGGCAGGGCAGGAACAGCAGTTACAGGCGCAAATTGCTACTGGCTGTCTCTCTCCGAGATCAGCAGAGCAGGGTGTGGATATAATGCAGATGCTCACTAAAGCACGAAACGACTATGACAAGGGAAAACTCAGTGAGCCAAAGGAAATTGGCAGTGGTGGGATCATCTACGGTCAAACCCCCCATCTGATCAAACCCATTCCCCTCAAACCAGCACAGGACACACACATTCAGGCACACACTCAGCATGATGCTGAGATGGACTCAAAACATCTGTCAGTTGTCACACTGTttggtgctcagccaaaaccagACTTGGGCTCAACACAGCCCAGCTTATCTGTTGGCAGGATGGGCCCAGCAAGGTCTTCAGTGGCCCGCTCTCTGTCTTATGATGACCCTTCTCCAGCAGGTGGTGCTGTGGTGTCCAGCACCCCCATGCAGCACTGTCCAGCCATCCACAAGCTCATGTCTGGTTCACTGCTGCAGCCTCTATCTGAATCCCCAGAGAGCCGCCTGTGTGAAAACGGAGCAGTCCAGATCCAGCCTGACCCAATACAAAAACTGTTAATGAACCCTCCTCCTGTGGCAGGGACTACAGTGATGCCCTCCATCCAATTAAAGCAGGGGGAAGTTGGCATGGGGCCCCAAATCCACTCCATGGCGAAGCCCTCGGGGCCCTTTCCAGCACAGCATCTGTTTGTCCCAAATAAAGTGCCCTCTGCTGGAGTAACAAGTAATGTGGTTTCACCTCATGAGCTTCTACAGAAGCTCACATTAGTGCAGCAGGAGCAAGAGCTGCATCCTCAACAGGAGGTCCTACAGCCAGGTCTGACCACCAGCAGCTCCAATCTCAGCAAAACCAATCTGACACAGGTGATGTCACCACAGCGTATCCCAGCGACTGTAGCCCCCACCCTCCTTCTTTCCCCCAGTGTGTTTGCTCAAACTAAAGTAACAAGAGCAGATCCAGAACCAGTTGAATCAAGAGCACTTAGCAAGTCTCAGCTACAGGCCACATTGCTCCATCTCATCAAGAATGATGCTTCATTCCTTGACACCATCTATGAAGCATATATCTCCCGTCTCACAACAGACTCCAGCTCAAAACCTTTTTGA

Function

symbol description
dcp1b Predicted to enable mRNA binding activity. Predicted to be involved in deadenylation-dependent decapping of nuclear-transcribed mRNA and deadenylation-independent decapping of nuclear-transcribed mRNA. Predicted to act upstream of or within nuclear-transcribed mRNA catabolic process, nonsense-mediated decay and positive regulation of catalytic activity. Predicted to be located in nucleus. Predicted to be active in P-body. Orthologous to human DCP1B (decapping mRNA 1B).

GO:

id name namespace
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA biological_process
GO:0043085 positive regulation of catalytic activity biological_process
GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA biological_process
GO:0000932 P-body cellular_component
GO:0030234 enzyme regulator activity molecular_function
GO:0003729 mRNA binding molecular_function
GO:0008047 enzyme activator activity molecular_function

KEGG:

id description
ko03018 RNA degradation
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-040819-1 Predicted to enable mRNA binding activity. Predicted to be involved in deadenylation-dependent decapping of nuclear-transcribed mRNA and deadenylation-independent decapping of nuclear-transcribed mRNA. Predicted to act upstream of or within nuclear-transcribed mRNA catabolic process, nonsense-mediated decay and positive regulation of catalytic activity. Predicted to be located in nucleus. Predicted to be active in P-body. Orthologous to human DCP1B (decapping mRNA 1B).

Ensembl:

ensembl_id ENSDARG00000045484

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055734 False 2447 mRNA 0.44 10 20302832 20314749
TCONS_00055735 False 1687 mRNA 0.49 9 20303396 20313810
TCONS_00055736 True 2515 mRNA 0.45 9 20303563 20314796

Neighbor

gene id symbol gene type direction distance location
XLOC_028754 cacna2d4a coding downstream 9979 20271463 ~ 20292853 (-)
XLOC_028753 cacna2d4a coding downstream 59811 20237461 ~ 20243021 (-)
XLOC_028752 stk38l coding downstream 66928 20224099 ~ 20235904 (-)
XLOC_028751 gsap coding downstream 80650 20198294 ~ 20222182 (-)
XLOC_028750 fgl2a coding downstream 120868 20178694 ~ 20181964 (-)
XLOC_028756 BX248410.1 coding upstream 81253 20396049 ~ 20396170 (-)
XLOC_028757 napepld coding upstream 165603 20480399 ~ 20486005 (-)
XLOC_028758 rassf8b coding upstream 192309 20507105 ~ 20521441 (-)
XLOC_028759 pawr coding upstream 1008210 21323006 ~ 21466825 (-)
XLOC_028760 ppp1r12a coding upstream 1174194 21488990 ~ 21584158 (-)
XLOC_028746 NA non-coding downstream 178774 20122913 ~ 20124058 (-)
XLOC_028741 NA non-coding downstream 254948 20044867 ~ 20047884 (-)
XLOC_028736 NA non-coding downstream 401699 19900015 ~ 19901133 (-)
XLOC_028733 NA non-coding downstream 763742 19534461 ~ 19539090 (-)
XLOC_028731 NA non-coding downstream 933047 19268385 ~ 19369785 (-)
XLOC_028761 NA non-coding upstream 1277448 21592244 ~ 21628998 (-)
XLOC_028762 NA non-coding upstream 1319216 21634012 ~ 21647992 (-)
XLOC_028764 BX569790.2 non-coding upstream 1341449 21656245 ~ 21657106 (-)
XLOC_028767 BX537162.1 non-coding upstream 1921562 22236358 ~ 22237294 (-)

Expression


Co-expression Network