G975701


Basic Information

Item Value
gene id G975701
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 38835232 ~ 38913447 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1111225
ctgacatttaatcatagtaaaacatccctgtcttaggtcagttaggatcaccactttattttaagaatgtgaaatgtcagaattatagtagagataattatttatttctgcttttatttctttcatcacattcccagtgggtcagaagtttactcaattagtatttggtagcattgactttaaattgtttcacttgggtcaaacgtttcaggtagccttccacaagcttcccacaataagttgggtgaattttggcccattcttcctgacagagctggtgtaattgagtcaggtttttaggccttcttgctcgcacattctttttcagttctgccaacataTTTTCTACAAgatcgaggtcagggctttgtgatggccactccaatactttgactttgtttgtccttaagccatttttccacaactttggaagtaggcttggggtcattgtccatttggaagaccaatttgcaaccaagctttaatgatgtcttgagatattgcttcaatacatccacagaatttttcctcctcatgatgccacctattttgtgaagtgcgccagtccctcctgcagcaaagcacctcaaaaacatgatgctgccatccctgtgcttcatggtagggatggtgttcttcggcttgcaagcctcacactttaacctccaaacataacgatggtcattatggccaaacagttctatttttgtttcattagaccagaggacatttctccaaaaagtacaatctttgtccccatgtgcagttgctaaccgtagtctggcttttttaaggctaaacagcctttcaggttatgtcgatataggactcgttttacagtggatacttttgtacctgtttttcctccaacatcttcacaaggtcctttgctgtccatttgcactttttgcaccaaagtacgttcatctctaggagacagaacgcatctccttcctgagaggtatgacggctgcgtggtcccatacttgcgtactattgtacagatgaacgtggtaccttcaggcatttggaaattgctcttaAGGAggtcttttttctgaggtctttacTGATTTCctgattttaccatgatgtcaagcaaagagccactgagtttgaaggtaggccttgaaatacatccacaggttttttttattttacctttatttaacttttacATGACTCACTATcagagtcagttaagaacaaattcttattttcaatgacggcctaggaccagtgggttaactgcctgttcaggggcagaacgacagatgtcagatgttgaccttgtcagctcgggggtttgaacttgcaaccttccggttactagtccaacgctctaaccactaggctaccctgccactacCCTGGTACaccaagccatgacatcattttctggaattttccaagctgtttaaattcacagtcaacttagtgtatgtaaacttctgtcccactggaattgtgatacagtgaattataagtgaaataatctgtctgtaagcaattgttggaaaaattacttgtgtcatgcacaaagtagatgtcttaaccgacttgccaaaactatagtttgttaacaagaaatttgtgtagtggttgaaaaacaagttttaatgactccaacctaagtgtatgtaaacttctgacttcaactgtatatgatgctcacaagccacacaatagttggatattcatttccCACTGAGCAAACAATTTCTGTACTTACAGCATTCTCAGAAATTAATTTTGTCATGTTTTTGTTTGGcagacaattttttttattgacattTGTCAATACAACTCATGAATGCAACTGTTCATGTCAAATTATTCTACTTGTAGCCCTAAATGTCcttaaaataaaattgtaaaacACTTAGTTGTAAGGCTAAATATGGACTGCAGAGAAATTAAagtagtgagagaaaaaaaaatatttttgggccTGATAATACTcttttgagacccctctttcaaagtaaCTGAAATCTCTTCATCTTCCCATGGTAGCCAAagtaatgggcaactgggcatttcaTACATGACcataagcatgatgggatgttaattgcttttTAACTGCTATCAATATACTTTgtgtccctcatttactcaagtgttaactTTGGCAGTTAGCTGTATCTTCTCGTGCATACTGTACACAAAATATCTGATAGTGAGTCATGTAAAAGTGTGTCTTTCACAAAATTCCTGATAGCTTATGATTGTTTTACTGATACTTGCCATTTTTAAATACATACACTTTCAGGTCCAGAGAATGAgtgttaaaaacatgtttttttataagaAAAATGAATTGTCATAAATGTTGACAAAACTAAAAATTGCGGatcaaaatgtaataaataaacccTAGTCAGAAAGGCATCGGAAATGTGTCACAAGGATGCATTAATTTCCTTGCATACTGCATTTACACTGGAGAAAGAAATTCAGTCAAAGCTGAAAATAACCTTATTATAGGGGTAAATGTGATTAACATACATTATGTCTTCATAGACTTCTATTTAAAATGACATGAGGGCCAGTGAGTGGTTGTGACAGAAGAAATTAACAAAAatagggactgagggataggagGATGTAAAGCTTTTGTGGGTTGCCTAAAATGCTGATATTGTCATTAGAAGGGGATCCAACTGAGTTTCCCGATGGAGATTAAAGTCTGGCAAGTGTTGGAGGGCAGCCACACCATTTCAACTAGATTGAAATGGAGATAGCCTAATGCAAAACCAAAtcccacatctgtcaggtggtgGCGGCCAAGAAGGATGCGGGACACGCCGGCCAGGAAAGCCCACAGCACCAGTAAGATGCGCAGAGGGACAGCGAGCACTAAGTGTGACAAAAGGAACTTGGATACCATGGCAGCCCGGCTTGCATGTGCTGCTGGGAAAGAGTAAATGTCCATCGCTATGTAATCAAAGAGGCCAGGTGTCATCTCCCAGGGTCCTTTGCGCTTCACAAGTTTCTGCATACCGGCGACGGTCATTACATCCAGTAAAAGcgctgaggagggagaggaaatggTGTTAA
>TU1111224
TGCCAATACATAGACGCATGCATGTATACACTATTCAAGATCAGAAAGTACATGAAAAGATTGTTGGTAACATTTCATTGTTCAAAGATAAATTACCCACTTTCTAATAGAATTAAACCAAACCTAACCCAATAGAGTTTCATCCATCTGAATTCAAATCAATATGTTCAGTGAATGCTTAATTACTGAATGCTTTATTATTACGAAACCCTGTCCCACACCTTACTTATCCAAAATGTTTATCTAGTGAAAAATCTCTTAACCTTTGTTTTAACCAGTAACTGTAGTCTGTCTTACAAAGGACAGCAGTTTCATTATGTGGTGGCATGAAAAAAATGACTGCATAGAATTATTTTGTTCTGAATATATAAGGAAGCTACCACTTACACATTTTGAAACTGACAATATTTAAGGCAAAATCCGCAAATTAAACACAATATAAAGTGTGCTGCTGAAATTATTGTAAAGATTTCCATTCATGTAAAAATAGCATCTTAGGCAATTAGAACAGcatctgtttttcacaattcctgacatttaatctgagtaaaaattccctgttttaggtcagttaggatcaccactttattttaag

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1111225 False 3063 lncRNA 0.40 2 38835232 38849440
TU1111224 True 595 lncRNA 0.32 2 38845835 38913447

Neighbor

gene id symbol gene type direction distance location
LOC118937440 NA coding upstream 256 38833162 ~ 38834976 (+)
LOC110535673 enkur coding upstream 203529 38626261 ~ 38631703 (+)
LOC110535674 LOC106578734 coding upstream 338121 38351571 ~ 38497111 (+)
LOC110535669 impa1 coding upstream 617974 38199126 ~ 38217258 (+)
LOC110535015 LOC106578726 coding upstream 789519 37866715 ~ 38045713 (+)
LOC110535679 LOC106580199 coding downstream 37845 38951292 ~ 38954353 (+)
LOC110535680 LOC106580198 coding downstream 76407 38989854 ~ 39004586 (+)
LOC110535681 mapkapk5 coding downstream 286289 39199736 ~ 39237016 (+)
LOC110535687 LOC106580186 coding downstream 569048 39482495 ~ 39520766 (+)
LOC110535016 NA coding downstream 713522 39626969 ~ 39633152 (+)
G975632 NA non-coding upstream 77165 38742791 ~ 38758067 (+)
G975631 NA non-coding upstream 93072 38741732 ~ 38742160 (+)
G975605 NA non-coding upstream 108701 38685682 ~ 38726531 (+)
G975600 NA non-coding upstream 188483 38646319 ~ 38646749 (+)
G975412 NA non-coding upstream 254722 38575726 ~ 38580510 (+)
G975747 LOC106582599 non-coding downstream 4124 38917571 ~ 38922153 (+)
G975748 NA non-coding downstream 6905 38920352 ~ 38923238 (+)
G976016 NA non-coding downstream 143605 39057052 ~ 39057433 (+)
G976024 NA non-coding downstream 148524 39061971 ~ 39062338 (+)
G976054 NA non-coding downstream 173479 39086926 ~ 39087255 (+)
G974184 NA other upstream 772132 38057798 ~ 38063100 (+)
lztfl1 LOC106590188 other upstream 999897 37813177 ~ 37835340 (+)
G973918 NA other upstream 1155864 37651138 ~ 37679368 (+)
LOC110535658 NA other upstream 1292030 37542062 ~ 37543202 (+)
G976017 NA other downstream 144229 39057676 ~ 39058011 (+)
G978255 NA other downstream 1854389 40767836 ~ 40768229 (+)
G978396 NA other downstream 2089629 41003076 ~ 41016088 (+)
G979689 NA other downstream 3165045 42078492 ~ 42078855 (+)
G979965 NA other downstream 3615073 42528520 ~ 42533308 (+)

Expression


Co-expression Network