Fish Transcriptome and Expression Database

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model fish

XLOC_028756 (BX248410.1)

Basic Information

Item	Value
gene id	XLOC_028756
gene name	BX248410.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007115.7
NCBI id	CM002888.2
chromosome length	78093715
location	20396049 ~ 20396170 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055737
tttcacaGCCAAAtccccctgcagcccaagactggttactcactgacgCTACagtaagcagggctgagcctggtcagtaactgaatgggagaccacatgggaaaactaggttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000082618

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00055737	True	122	rRNA	0.52	1	20396049	20396170

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_028755	dcp1b	coding	downstream	81253	20302832 ~ 20314796 (-)
XLOC_028754	cacna2d4a	coding	downstream	103196	20271463 ~ 20292853 (-)
XLOC_028753	cacna2d4a	coding	downstream	153028	20237461 ~ 20243021 (-)
XLOC_028752	stk38l	coding	downstream	160145	20224099 ~ 20235904 (-)
XLOC_028751	gsap	coding	downstream	173867	20198294 ~ 20222182 (-)
XLOC_028757	napepld	coding	upstream	84229	20480399 ~ 20486005 (-)
XLOC_028758	rassf8b	coding	upstream	110935	20507105 ~ 20521441 (-)
XLOC_028759	pawr	coding	upstream	926836	21323006 ~ 21466825 (-)
XLOC_028760	ppp1r12a	coding	upstream	1092820	21488990 ~ 21584158 (-)
XLOC_028761	NA	coding	upstream	1196074	21592244 ~ 21628998 (-)
XLOC_028746	NA	non-coding	downstream	271991	20122913 ~ 20124058 (-)
XLOC_028741	NA	non-coding	downstream	348165	20044867 ~ 20047884 (-)
XLOC_028736	NA	non-coding	downstream	494916	19900015 ~ 19901133 (-)
XLOC_028733	NA	non-coding	downstream	856959	19534461 ~ 19539090 (-)
XLOC_028731	NA	non-coding	downstream	1026264	19268385 ~ 19369785 (-)
XLOC_028762	NA	non-coding	upstream	1237842	21634012 ~ 21647992 (-)
XLOC_028764	BX569790.2	non-coding	upstream	1260075	21656245 ~ 21657106 (-)
XLOC_028767	BX537162.1	non-coding	upstream	1840188	22236358 ~ 22237294 (-)
XLOC_028768	NA	non-coding	upstream	1886555	22282725 ~ 22291753 (-)

Expression

Co-expression Network