XLOC_028758 (rassf8b)


Basic Information

Item Value
gene id XLOC_028758
gene name rassf8b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 20507105 ~ 20521441 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055741
CAGAGCTGCCGCTGATGTAACGGGCCACACTGAACTTCAGCGAGCGGAGCAACATAACGGACCTCAACCAGACCGAATTCACGGACATCACACGAAGAGATTGTTTACAAGGCGTTAAAGGGGAAAACCGCAGCATCTCTTAAAATCTTGGTTCTGCTCTAACGCAGAGAAGTGGACCCGGACTGAGGATTGTGGCGGTCCGGGACTGCAGACACACGCAGTGATAAGAGCAGCATGCAGACCAGAGAGCCTGTAACGGGTGCCTGCAGAGGTGAGGAATGACATCATCCAGATGAGAGGCATGGAGCTGAAGGTATGGGTGGATGGAGTGCAGCGCATTGTCTGCGGTGTCACAGAGGTCACCACATGTCAAGAGGTTGTGATTGCGTTGGCCCAAGCAATAGGACGAACTGGTCGCTACACATTGATTGAAAAATGGCGTGAGACAGAGAGACATTTGGCGCCCCATGAGAATCCTGTGGTCTCTCTGAATAAATGGGGTCAGTACGCTAGCGATGTGCAGTTAGTGCTTCAACGTACTGGCCCTTCTTTGAGTGAGCGCCCCACTTCAGAGACCTCAGCAAGAGCCCCTGAGCGTACCCTATATCGCCAAAGTCTGCCTCCCATGGCAAAGCTTCGCCCCACAGCCAATGATCGTTCCCTCAAACGCCGTGAACCAAAACGCAAGTCCCTCACTTTCACTGGTGGTGCCAAAGGGTTGCGTGACATCTTCGGAAAGAGTCGTGAAGGTGACTCAAAGCAGAGAGCGGTGAACACAAACCGGTGCAGCACACCAGCACCTACACAGGAGTTGTCTCGCCTGGTGCAGCTGCAGAAGGACAAGTTGCACATCCTAGAGCAAAAACTGCAACGCTGTGAGACTGAGCTGCAGCAGCAATTAACtgaggaagaagaagaggaacTAGTTGAACTAGAGCAGCAGGTCCGCAGAAATGAGGCAGAGATGAAGGAGCATGAATTCTGGGAGAGTGAGCTGCAGATTGAGCAGGACAAAGAAAGGCAACTGCGTGAGCAGCTGCAGGAACTGCGCAGTCGTGTACAAGAGTGTGAGGAGCAGCTGGGAGAGTACCTAGCACGTATTCAGTGCATGGAGGCAGGGCTGGAGGCAGAGCGCCTGCAACAAGAACTAATGGAGACTCGACTGGCAGATGAAATGGAGGTTCGGTTGCGACTGGACAAGGCACGCACTGAGCTGGACATACAGGTGCAGCAGGCTGTGAGACTAGAAAGCACCTGCAGAGCTGTGGAGCTCTCGCTTGGGCATTCAAACATTAGGCTACAGGAGAAAGAGCTAGAGCTGGAACAGTTAACTAAGGAGCTGAGACAGGTAAATCTTCAGCAGTTTATCCAACAAACTGGCACCAAAGTAACAGTTCTACCAGCAGACCCTGGTGAGGATGAAACCAACACAGAGGCAGAAAATGAGTCTGGATCTCTGAAGCGGCTTGGATCGGCCAGACAACTTCCTGCTGACCTCCGAGCTCTGCAGAGCCCCCTCAACACAACCTTTAACCCTGAAGGAATCTACGTCTGAGTTTGCACTGGGCATTGATATCTGATTTCCTACATGACCCTTCACCACTCTCAAATCATGAACATTTCCTTTCGGTAGATCGCACACTCTGGAAATGTAGAGGTATCCTATTtgctctacaaaaaa
>TCONS_00055742
CATGGAGCTGAAGGTATGGGTGGATGGAGTGCAGCGCATTGTCTGCGGTGTCACAGAGGTCACCACATGTCAAGAGGTTGTGATTGCGTTGGCCCAAGCAATAGGACGAACTGGTCGCTACACATTGATTGAAAAATGGCGTGAGACAGAGAGACATTTGGCGCCCCATGAGAATCCTGTGGTCTCTCTGAATAAATGGGGTCAGTACGCTAGCGATGTGCAGTTAGTGCTTCAACGTACTGGCCCTTCTTTGAGTGAGCGCCCCACTTCAGAGACCTCAGCAAGAGCCCCTGAGCGTACCCTATATCGCCAAAGTCTGCCTCCCATGGCAAAGCTTCGCCCCACAGCCAATGATCGTTCCCTCAAACGCCGTGAACCAAAACGCAAGTCCCTCACTTTCACTGGTGGTGCCAAAGGGTTGCGTGACATCTTCGGAAAGAGTCGTGAAGGTGACTCAAAGCAGAGAGCGGTGAACACAAACCGGTGCAGCACACCAGCACCTACACAGGAGTTGTCTCGCCTGGTGCAGCTGCAGAAGGACAAGTTGCACATCCTAGAGCAAAAACTGCAACGCTGTGAGACTGAGCTGCAGCAGCAATTAACtgaggaagaagaagaggaacTAGTTGAACTAGAGCAGCAGGTCCGCAGAAATGAGGCAGAGATGAAGGAGCATGAATTCTGGGAGAGTGAGCTGCAGATTGAGCAGGACAAAGAAAGGCAACTGCGTGAGCAGCTGCAGGAACTGCGCAGTCGTGTACAAGAGTGTGAGGAGCAGCTGGGAGAGTACCTAGCACGTATTCAGTGCATGGAGGCAGGGCTGGAGGCAGAGCGCCTGCAACAAGAACTAATGGAGACTCGACTGGCAGATGAAATGGAGGTTCGGTTGCGACTGGACAAGGCACGCACTGAGCTGGACATACAGGTGCAGCAGGCTGTGAGACTAGAAAGCACCTGCAGAGCTGTGGAGCTCTCGCTTGGGCATTCAAACATTAGGCTACAGGAGAAAGAGCTAGAGCTGGAACAGTTAACTAAGGAGCTGAGACAGGTAAATCTTCAGCAGTTTATCCAACAAACTGGCACCAAAGTAACAGTTCTACCAGCAGACCCTGGTGAGGATGAAACCAACACAGAGGCAGAAAATGAGTCTGGATCTCTGAAGCGGCTTGGATCGGCCAGACAACTTCCTGCTGACCTCCGAGCTCTGCAGAGCCCCCTCAACACAACCTTTAACCCTGAAGGAATCTACGTCTGAGT

Function

symbol description
rassf8b Predicted to act upstream of or within signal transduction. Is expressed in several structures, including anterior neural keel; central nervous system; neural plate; optic vesicle; and segmental plate. Orthologous to human RASSF8 (Ras association domain family member 8).

GO:

id name namespace
GO:0034334 adherens junction maintenance biological_process
GO:0007165 signal transduction biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1338 Predicted to act upstream of or within signal transduction. Is expressed in several structures, including anterior neural keel; central nervous system; neural plate; optic vesicle; and segmental plate. Orthologous to human RASSF8 (Ras association domain family member 8).

Ensembl:

ensembl_id ENSDARG00000045485

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055741 False 1681 mRNA 0.52 5 20507105 20521441
TCONS_00055742 True 1257 mRNA 0.52 4 20507229 20511595

Neighbor

gene id symbol gene type direction distance location
XLOC_028757 napepld coding downstream 21100 20480399 ~ 20486005 (-)
XLOC_028756 BX248410.1 coding downstream 110935 20396049 ~ 20396170 (-)
XLOC_028755 dcp1b coding downstream 192309 20302832 ~ 20314796 (-)
XLOC_028754 cacna2d4a coding downstream 214252 20271463 ~ 20292853 (-)
XLOC_028753 cacna2d4a coding downstream 264084 20237461 ~ 20243021 (-)
XLOC_028759 pawr coding upstream 801565 21323006 ~ 21466825 (-)
XLOC_028760 ppp1r12a coding upstream 967549 21488990 ~ 21584158 (-)
XLOC_028761 NA coding upstream 1070803 21592244 ~ 21628998 (-)
XLOC_028762 NA coding upstream 1112571 21634012 ~ 21647992 (-)
XLOC_028763 rps16 coding upstream 1126569 21648010 ~ 21652812 (-)
XLOC_028746 NA non-coding downstream 383047 20122913 ~ 20124058 (-)
XLOC_028741 NA non-coding downstream 459221 20044867 ~ 20047884 (-)
XLOC_028736 NA non-coding downstream 605972 19900015 ~ 19901133 (-)
XLOC_028733 NA non-coding downstream 968015 19534461 ~ 19539090 (-)
XLOC_028764 BX569790.2 non-coding upstream 1134804 21656245 ~ 21657106 (-)
XLOC_028767 BX537162.1 non-coding upstream 1714917 22236358 ~ 22237294 (-)
XLOC_028768 NA non-coding upstream 1761284 22282725 ~ 22291753 (-)

Expression


Co-expression Network