XLOC_002876 (cux1a)


Basic Information

Item Value
gene id XLOC_002876
gene name cux1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 32898533 ~ 33156789 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005320
CTTTCCACAGAAATCACCCCCAAAACCTCGGCCAGCTGCAGTCCTGCCCCAGAATCCCCCCTGAGCTCGGCTGAGGAGTCTGTGAAGAGCCAGCAGGAGGAGCAGATGTGCCGATCCTCCGTCCAGGAGCCCAGCGAAGCCTCCGAGTCTCAGCCCGGGACGCCGCTGCCGCTGCCTCTGCCGGGACAGGCCGGTCTCAGCATTCAGGAGATGGTGGCCATGTCAGCCGAGCTGGACACGTACGTCATCACGAAAAAAGTCAAAGAAGTCCTCACTGATAACAACCTGGGCCAGCGTCTGTTCGGGGAGAGCATTCTGGGTTTGACGCAGGGCTCAGTGTCTGATCTGCTGGCTCGACCCAAACCCTGGCACAAGCTCAGCCTGAAGGGTCGCGAGCCGTTCGTGCGCATGCAGCTGTGGTTGAGCGACCCGCGCAACGTGGAGAAGCTGATGGACATGAAGCGCATGGAGAAGAAAGCCTACATGAAAAGGCGCCACAGCTCCATCGGTGAGAGTCATTCGCTGGAGAGCGGCTTGTCTGCAGCAGACCTGACACAGGGTGCCACCTCAACAGCAGCAGCCCCAGCTGAAGAAACCCCGGGTGGTTCTGGCTCCGGAAGAGAAGGAAGCTCTGAAGCGGGCCTACCAGCAGAAGCCTTACCCCTCCCCTAAAACCATTGAGGAGTTAGCGAGTCAGCTCAACCTCAAAACCAGCACCGTCATCAACTGGTTCCACAACTACAGGTCTCGTATCCGGCGAGAGCTTTTTATCGAAGAGATCCAGGCAGCAGCAGGTGAAGGTGGATCTCCATCTGCACGGCCTGGAAAATCTGGAGGCGAGGGAGAAAACAGCTGCGACGGCACTGAGTCCGACAGCACGGCAGAAGGCCGACCGAGTGGCTCAGAGGAGCGCAAGGGCTTCCTGGAGAGCCCGGGCCTCGGCCACAGAGAAGAAGATGGCGAGGGCGAGTTTCCTAGTGCCTCGGGCACCAGCCGGCCACGAGGAGGCATCATAGACAGCCTGTTCGGCATCCCCGAGTCCATATCCGTCACCAATGCTGCCACGACCCCCTGCCGAAATCCAAAGGATAGCAGTCTACGCAAGAAGAAAGCAGCCAACCTCAACAACATCATCCACCGGCTGGAGAAAGCGGCGAACCGAGACGAGCCTCACGAATGGGAGTTCTGAGACTCCGCCGCCATCTTGACGTTTTATTCTCACTTTGTCCCTCACTGAGCTAACCCGGCCAAGCCTGGTGCACACACACCACCGGTCAACCCAAGGGTTTTCCATTTGCTGTTTCGAAGTGGGCTTTCAGAGACAAGAACAAGAAAAGGAAACGAGTTTTTAGTCTGTTTATTTTGTGAAGCACTTAACAGCCCTGCTGGCCACAGGACTGTGACACACCATTGGCTAATGGTGACGACACAAAACTGAAAAGCACAGGAGAGGGAGCGTTCCCACGAAATCTTCTCAAGACTGGCGACAGTCAcaaaaaacacactcacacactatgatCTCACAGTGTCTCTATTTCTAGTAGAGACGTTCTCACCAACTAGCTGAATAACTGTTACAATAATTTATCAGTTCTCAAGACTCTTGGGAGTTTCCTCTTTTGTATACCGTACGCTTCGGCCGTGAGCAGAGACTAGGTTTCTaaccaaaacatttaaaagtaaGTGTTGGCTGAAGGAACACGGGTGCACCGTCCCCCACCTGCCTCTCCCTCCCTTCCCCAGAGGAGGCCATCCAATGGCTATGCAACTCTAGTACGCAATGGATTCCAGAGTAATGGAAGCCGCATTATTTTCACAGTACGGAAACTTCTCCGATGCGAGAAGAAAATCCTTTTTATAGCAATTAAGTTGCCACCGAGAGATTGCACAGTCAGTTGACTCTAAACAGCACTCCTTTCGATTTTACACGCCAACGGcctaaaagagagaaaaaaaatcgaaaatcACGCAAACGAAAACAATTGTCATAAGAATCCACGTATCACGCAAAAATTCATTTCGTTCTTGTAAGGTCGATGCAAATGGGACACGGGAGATATTTCGTAACTCGATAGCTAAGTGtcaatttttcttcttttatttaggTCTCTTGtaagggtagcgctcctttattTCTTTTCCATAGCTTTAATCACCCCCGCGACTTGCGTTTTAAAGCTCGCGGAGGTCTTGTTTAATAACAAACGTCATTTTaggccaaaacaaagacagatagTGAAGAAAAAAAGGATTTGTACAGTACTTTGAGTAAATATTCCTGACGAGATATTTTTTAAAGAGAATGAACAAGCCTGATTTTTATCCTCTTATAATAGAACCATACATCAGAGACCTCTAACCAAGTTGGGCAGTTTGGAATTACCATTCTAATCCAATATCCATGGTGTTATAAATTCTAATTCTATGGTGTGCACTGTATGGGCTGGTCCTCAGCACCAGGGTACCGGACGCTCTCGTGCAAACTCGAAACTTCAGGTTTTTCACCAGCTTCTCCACTCATTGTTCACCCAAGCTTTTCACGGCGTCCACGAGTATGTTCACCTGTCCTCCGAGAcgactggaaaaaaaacaaaaaacttacgAAATGGACTTTTGTTTTCTTCATACTGTAAATGACGGAGGACTTTTCATCCACAGTTCTTGtttaacacacattttaaaaaagaggaaaatatgTCGATTGTGAATGAAAAGCTCTTTTAACGTTGGCAACCTGAGGTGAATCGCATGCGTCAGACGACGCTGCAAGGACTTGGCACCTCTGTAGAAATGTTCTTTCTCTCCTGAATCACCTTTTCGAAACCTGCTCACTTTTCACCTCCGGCCCTTGTGTCATTGTATGCAGTTGATTTAGTGAACGAAAGCGCAGATCGCCGGTGCCACGCGCTCGTCTGCGTGCGAAACCTTTGAGTGTGCgggtgtttgtgtgcgtgtgattGTTGACAAGAGTGATCTATATTtgtatattactactactactcgCCACAGGCAGTGGAAGCAAACACCTCCTCACGTCCCTAAGCTATTTAGCAGTCCTGCAGCATATCACATAGTACGTTTAAGTTCTTTTTATTTACGCGCATAAACTAAtggtagatattttttttttccgtttgttTGTTGGTGTGGTTTGCTTATTTATAGATGCTGTCTTTTACATATTGATGTCTTATATTGTTATACGTGTTCTTTTTTTGTAATGGAAGGGACTATAAAAGGTCAGGTTACATATTTTTAGACTAATAGACTGCCGGCAGTATtggattacatttaaatgatGTACTTTTGATACATGTCTATTGATTAATTCTGAAgattatctctttttttttccatatattttaCTCGGTTAGTGAGCTGGATGAACAGTTTCTACGTTGACAAAGGAAGCAGAATTCTATGTATTGCATTAATGATTTTAATTAGTAcgcattttagatgttttaacgAGATGACAATTCAAGGCGAATTGCGTTTGGCTGTATTCACTCTACAAATGACGCTCTTGAATTAGGTTTTCAGGTGATTAACCTGCGAACTTCCTGAGATTACGTTTATTATTATCGCAATCAAGCTTAGTTGCTACAATGAGCCAGTGAACAACTGGTAGTTAACGTCACTGAAAATTTTAGCTGTCGCTTTGAGCTGCACCTTGAGgaattggactttttttttttgttctttttaagtAGGAATGAAATTCACTTGATGTCGTTTGGttgcgttaaaaaaaattacgcCGACGAATCTCGAAGAACGCCGTCGGCTTAAAACTACCTTTTGGCCTTTTTTACGCGTGCCAATGAATGATTCAAATCAAATTTGTCTCTTTAAGACCTAACGAAAGCACAGAGAGATACTACGTGTACCAATCGAAAAATATGAACACGTCAGAAGCCCGCGACTGTTTCTCGAACTTTCTCTCCACGTCTAACATTGGAGTGCCTTCACTGAAAAAAACTGTTCGCTACTATAATTGCGTCGTCTTCATTCCACGTTACTTAATCGGAAAAATACCGTGTGTCAGATCATAAAACTAAGTTTTTAGCAATCTCCGCCAGCAAGTTTATATTAATAAGGTCTCATATAGTCTCAGGTCATAACATTCAGTACTTTTAGGGTGTCTCTATCGTTTTATCTGAGAGAAAACAGCTGTCCCAGGATTCAAGCttgtaaaacatacaaaaactaaaaaaaccaAAGGCAATTTTCGATCGGTTAACGCCACATTTACTCATCCCAAATGTGTTTTAATCATGTCTAGGCATTCATCATATGTTTATAACCATGTTATTGTATTTTAACGGCAAGTTTCCCCTACGCTGGAGGAAGTTCACAGATGGGATTCGGCTTGTGGAAACTCTACTATAGTGTGGACCAAATTGTCAAAGCAGACAAATCAGCTTGtaaagactctttttttttttttctgatcataAACATGTGATCTCAATTGAACAcagaagaaacacacacacacacttttaagaGCACATTCAGATCTGGTCTATATTAAGGACACATTTTTATGTCCGTCACGTTCTTCTCACTGACTGAAACGTAACTGTACTGTCGATTTCAtggcatgaaagaaaaaaaaaaacagacagatgtcCAGCACTTTTTTCTCTgctttttgcaaatatttttctATGGAAAGTATTGCAGATGACTAAACACATCAACAATAACGACTGCACAAAGACAGCACGTTTatatgatttcttaaaaaaaaggacaaaaaaatcaacaaaaaaaaatagaaaaactaagcaacaaaaaaaatagataaataaataacgaTCATCATTATTGATATTACATTGGTAGTCACGAGTAGCATTAATGTAGATATTCGTCCGTAGCTTAGTTGGCTAGTGATGTCATAATTGTTACCTCGTTTATTCCCTCACACTTACATCACTTCCTGAGACAGTATGTTCTTTCTTCACCTGAGACAGTATGTTCTGAACAGCCACAATTTGTTTCATCGTATCCCAGATGGAGATCCATTTacattcatttctgtttgtttgttttgaaagttGTGTAGTTGTGTTACATGTGAGGCGAGCACGACGATTATACATCTGTCTCAGCGAGAGCAACACTTTAGTATCACCATTCATTTCGACCAACAATCTATGGAAATGGGATGTCTTGATCATGACAtgcagatctctctctctctctctctttctgttgttGCTCTGTATGCTGTATTATGGGTAAAATGAAGCCTTGTAATGAAAAATGACAGGCAGCTCCCGACACAAGCTGGTATCCTATAGATTCTCCTTAGGTCTCTCAAAGCTCAGGTAGAACCTCGGTTTAGCACAGTCCTTTTGTCCATTAGTTTGTTGGTGACACTTTCCCTCTTAACACCTGCTAACGACAGTTGTATGGTTTATTTTTCTATGTGTCATGGTTTTGAACCACAAGATGGAGCTGAATCCTCCATTTTACCTGAATAAAGACTCTTCCACTTTGTTCTCTTGATATGTATTCAGTTCGGTTGGTTTTTCCTTTGTGTATCATCATGTAGTCTTGTATTCTGTTCCCAGCGCTGTTACAGTTCTAATCCAAATTGAAAAAAGAAGCAATATCACTGTTtgaaattcattattattattataattattattattattcctcaTTACCACCATAGGTGTATTAACTGAAGTAAATATCTTTTGTACAAACACATCACCACTGTACTCTGCATTTATTTGAGCGTTTCTTATGTCGGAAACTTGAAACTAATGTTCGAAATCTATTATTTATATCATCATGTGTAAATGCTTTTATGAGtatgtacactcactggtcacttagGTGCATAAGGTTGAGCTCCATTTTGTTTTCAGAACGTAATCCTACAAAAACATTACTCAAAGATTTTGGTCTACATTTGCAAGATTTATCAgcaaatccatatttatttattttttagaaattgcATTGAGTGATATTTCA
>TCONS_00005323
ATGGCGGCCAATGCGGGATCGATGTTTCAATATTGGAAACGCTTTGATTTGCAGCAGCTCCAGAAAGAACTGGATGCCACCGCCACAGCCCTGGCCAACCGACAGGATGAGAGCGAGCAGTCCAGGAAAAAACTCATCGACCAAAGCCGCGAGTTCAAGAAGAATACTCCAGAGGATTTGCGTAAACAGATAGCTCCTTTGCTGAAGGGCTTCCAAGCAGAGATCGACGCCTTGAGTAAAAGAAGTAAAGAATCAGAGGCTGCTTTCCTCAGCGTGTACAAGAGATTAATCGATGTCCCAGatccCGTCTCGGCACTGGAAGCAGCTCAGCAACTCCAGGTGACGGTTCGGAAGATGCACGACTTGGAGACCGAAAACCAGAGGCTCAAAGATACACTACAAGAGTACGAACGTGAAATTTCAGAGGTTAAAAACCAAGAAGTCACTATTAAAGCACTTAAAGAGAAGCTGGAGCAGTATGAGCGTTCTCTGCAGGCCAAGAACACAGAGGAGGCTGTCGAGCCGAACTTGGACTCATCAGAAAGAGAAGAGAGGCAAAGCAAAGGAGAAAACCTTCCAAACAACTATGCAGACAAGGAGAGTCAGCCAGAGCAGAGCCAGGAGAGCAGGACAGAAGACTCGGATGTGAAAACACAGTCCTTACAAACAGcACTTGAAGCAACTCAGGCAGAACTCCACGAACTGAAGACGAAATATGATGAAGAATCCACAGCAAAggCCAATGAGATTGAAGCGGTGATGACAGACTTGGAAAGAGCCAATCAGAGGGCCGAGACGGCAGAGAGGGAGGCCGGGACCCTGAGGGAGCAGCTCACTTCTGCTGGAAAGACCATGCAATCATCCAATCAGATCCAGAACGCTCCGGAAAtgGACAAGTCTCTGGAGGCAGAGCTGGGTGCGAAAGAGAGGGAGGTGGAGCGTTTGGCTGAGGACGTTCAGAGACTTCAGGCCAGTCTGGCTCAGCTCAGCGAGACATCAACCAACCAGATCAGCCAGCTCGAGCAGCAGCTCAGCTCCAAAGAGGCACTACTAAAGCAACTTGAAGAAAAGCTTCAAGATCAGTCAGACTACGAGGAGATCAAACGAGAACTCTGCACCCTGAAATCAGTGGAGCACAACTCATCAGATCATCACTCTTCAGCGCAGGACTCATCCAAGCCACTGGAGATGTTGCTGACAGGGAAAGACCATAGCCAGCTGTCAGAGAGCGCTTTGAAACGACTGGCCAACAGTGACTTCACTGGAGCAGTGGGCCGTAAACTGAAAGAAACTACAGTGGAAAACCCTCAGCGTCTTCCTGCCACTCCGGTCCCGACCACCCTCCAGGGGTCTCCACCTCCACCCTCCCCTCAGCTGCTGATGAGGACGGGCACCGCTACCTCCGAATCCGCTGCCAGTGCCAACGGTACCCACCCTTTCTCCCCCACAGGCATCGGGCCGGACTTCTTCACCCCCGGCATGGCCAGCGTGGGCGCCACGTTCCCCCCGCTGGCTGGCAAAATGGCACTCAACTCTCTTCTTCAGAGGCAGCTCATGCAAACCATCTACACCAAAGCCCTCCAGGACCCCTCTCCCAGTTCGGTGCTGTTCGGGCCACCCCATTACGCTACCACCAACTCCCTCTCCAGCCCCCTGCCGCCCCAGTCGGCAGGCAGCCCGGAGGTTAACGGCATGGCGCCTTCGCCCAGCCAATCAGAGGGCGCGGGCAGCACGTCGGAAGGTGAGGAAATGGATACAGCGGAGATTGCCCGACAGGTCAAGGAGCAGCTGATCAAACACAACATCGGCCAGCGCGTGTTCGGCCATTACGTGCTGGGTCTCTCCCAAGGCTCCGTTAGCGAAATTCTGGCTCGGCCCAAACCTTGGAGCAAGCTAACCATCCGTGGCAAAGAGCCGTTTCACAAGATGAAGCACTTCCTGTCCGATGAGCAGAACATCCTGGCGCTGAGGAGCATCCAGGGCAGGCAGAGAGAGAACCCAGGCCAGAACCTGAACAGAGTGTTTCAGGATGTTCCGAAGCGAAGAGGCGGCTCTGAAGGCTCCACGCGGCCAGGTAACATCACCACACGGATCCGCACGCCTGAAACCGGCTCCGATGAAGCCATCAAGTCCATCTTAGAGCAGGCCAAGAGAGAGTTACAAGTGCAGAAAGCAGAAGAATCTAACATAGATCTGAAACCCATGAGGATGACTAAGCAATTCGAGAGCTCTCAGCCTCCGTCCTCCTCCAGCAACTCGGACGAGAACATTCGCTCCATCCTCGAGCAGGCTCGCAGGGAGATGGAGGCGCAGCAGGTGGCACTGGAGCCCGTCTTGAAGGCCAGCTCCATGGGCCCGACGGACCTCTCGCTCCTGGGCTCCAAACTCCTGGGCTCCCCGCTCTCCACCCTGCCCTACACCCCCATCACCCAGTCCCTGAAGAAGCCCTCTAGTTCACCGCTGCTGGACTTCCACCATGGTGGAGTGAAGAAGGAGATGGGCGAGGTGGCCGTTTCGGATGTGGGTCTGGACGGAGTGGTGCCCAAGCTGGGCCGTTTGTCTGAGAGCGGTTTGGGTGGTGGCTCGTGGAGGGAGCACTGGTGGAGCACAGGCCTGTCAGAGCGCCGCGGGTCCAGCCAGCCCTCCGTTAGTGAAGACGCACACAGTCAAGAGGACAGCAAAGAGAAGCTCCCTCGGCTGGGCAGCACTGCGCCGGTGGCTCCTGCGTCGTCTCTGGATTACTGGAAGGACTGGCCGAGCTCAGAATCGCCGTACTCTCAGAGCTCAGAGCTCAGCCTGCAGATGCCCAGTGGCAGTGAGACCCCTCAGAGCAGCCCACTGCCTTCCTCCTCGCCCTTACTGTCCCTGCCCAAAGTGGCCAAACCTGTGGTGCCGCCGCTTACGCCAGAGCAATACGAGTACTACATGTACCAGGAGGTGGACACTGTCGACCTCACACAGCAGGTCAAAGAAAAACTCGCCAAGAACGGCATCTGCCAGCGCATCTTCGGGGAGAAGgTGCTGGGTCTCTCTCAGGGGAGTGTGAGCGACATGCTCTCTCGACCAAAGCACTGGAGCAAACTCACACAGAAGGGAAGGGAGCCGTTTATACGCATGCAGTTATGGCTGAACGGAGAGCTGGGACAGGCACTGATGCCAATGCCTGGACAGACACAAGAAATCACCCCCAAAACCTCGGCCAGCTGCAGTCCTGCCCCAGAATCCCCCCTGAGCTCGGCTGAGGAGTCTGTGAAGAGCCAGCAGGAGGAGCAGATGTGCCGATCCTCCGTCCAGGAGCCCAGCGAAGCCTCCGAGTCTCAGCCCGGGACGCCGCTGCCGCTGCCTCTGCCGGGACAGGCCGGTCTCAGCATTCAGGAGATGGTGGCCATGTCAGCCGAGCTGGACACGTACGTCATCACGAAAAAAGTCAAAGAAGTCCTCACTGATAACAACCTGGGCCAGCGTCTGTTCGGGGAGAGCATTCTGGGTTTGACGCAGGGCTCAGTGTCTGATCTGCTGGCTCGACCCAAACCCTGGCACAAGCTCAGCCTGAAGGGTCGCGAGCCGTTCGTGCGCATGCAGCTGTGGTTGAGCGACCCGCGCAACGTGGAGAAGCTGATGGACATGAAGCGCATGGAGAAGAAAGCCTACATGAAAAGGCGCCACAGCTCCATCGGTGAGAGTCATTCGCTGGAGAGCGGCTTGTCTGCAGCAGACCTGACACAGGGTGCCAGTCCCCAACACCTATCCCAGCAGCAGCCGCCGCAGCAGATGCAGCCTCAACAGCAGCAGCCCCAGCTGAAGAAACCCCGGGTGGTTCTGGCTCCGGAAGAGAAGGAAGCTCTGAAGCGGGCCTACCAGCAGAAGCCTTACCCCTCCCCTAAAACCATTGAGGAGTTAGCGAGTCAGCTCAACCTCAAAACCAGCACCGTCATCAACTGGTTCCACAACTACAGGTCTCGTATCCGGCGAGAGCTTTTTATCGAAGAGATCCAGGCAGCAGCAGGTGAAGGTGGATCTCCATCTGCACGGCCTGGAAAATCTGGAGGCGAGGGAGAAAACAGCTGCGACGGCACTGAGTCCGACAGCACGGCAGAAGGCCGACCGAGTGGCTCAGAGGAGCGCAAGGGCTTCCTGGAGAGCCCGGGCCTCGGCCACAGAGAAGAAGATGGCGAGGGCGAGTTTCCTAGTGCCTCGGGCACCAGCCGGCCACGAGGAGGCATCATAGACAGCCTGTTCGGCATCCCCGAGTCCATATCCGTCACCAATGCTGCCACGACCCCCTGCCGAAATCCAAAGGATAGCAGTCTACGCAAGAAGAAAGCAGCCAACCTCAACAACATCATCCACCGGCTGGAGAAAGCGGCGAACCGAGACGAGCCTCACGAATGGGAGTTCTGA
>TCONS_00005322
ATGGCGGCCAATGCGGGATCGATGTTTCAATATTGGAAACGCTTTGATTTGCAGCAGCTCCAGAAAGAACTGGATGCCACCGCCACAGCCCTGGCCAACCGACAGGATGAGAGCGAGCAGTCCAGGAAAAAACTCATCGACCAAAGCCGCGAGTTCAAGAAGAATACTCCAGAGGATTTGCGTAAACAGATAGCTCCTTTGCTGAAGGGCTTCCAAGCAGAGATCGACGCCTTGAGTAAAAGAAGTAAAGAATCAGAGGCTGCTTTCCTCAGCGTGTACAAGAGATTAATCGATGTCCCAGatccCGTCTCGGCACTGGAAGCAGCTCAGCAACTCCAGGTGACGGTTCGGAAGATGCACGACTTGGAGACCGAAAACCAGAGGCTCAAAGATACACTACAAGAGTACGAACGTGAAATTTCAGAGGTTAAAAACCAAGAAGTCACTATTAAAGCACTTAAAGAGAAGCTGGAGCAGTATGAGCGTTCTCTGCAGGCCAAGAACACAGAGGAGGCTGTCGAGCCGAACTTGGACTCATCAGAAAGAGAAGAGAGGCAAAGCAAAGGAGAAAACCTTCCAAACAACTATGCAGACAAGGAGAGTCAGCCAGAGCAGAGCCAGGAGAGCAGGACAGAAGACTCGGATGTGAAAACACAGTCCTTACAAACAGcACTTGAAGCAACTCAGGCAGAACTCCACGAACTGAAGACGAAATATGATGAAGAATCCACAGCAAAggCCAATGAGATTGAAGCGGTGATGACAGACTTGGAAAGAGCCAATCAGAGGGCCGAGACGGCAGAGAGGGAGGCCGGGACCCTGAGGGAGCAGCTCACTTCTGCTGGAAAGACCATGCAATCATCCAATCAGATCCAGAACGCTCCGGAAAtgGACAAGTCTCTGGAGGCAGAGCTGGGTGCGAAAGAGAGGGAGGTGGAGCGTTTGGCTGAGGACGTTCAGAGACTTCAGGCCAGTCTGGCTCAGCTCAGCGAGACATCAACCAACCAGATCAGCCAGCTCGAGCAGCAGCTCAGCTCCAAAGAGGCACTACTAAAGCAACTTGAAGAAAAGCTTCAAGATCAGTCAGACTACGAGGAGATCAAACGAGAACTCTGCACCCTGAAATCAGTGGAGCACAACTCATCAGATCATCACTCTTCAGCGCAGGACTCATCCAAGCCACTGGAGATGTTGCTGACAGGGAAAGACCATAGCCAGCTGTCAGAGAGCGCTTTGAAACGACTGGCCAACAGTGACTTCACTGGAGCAGTGGGCCGTAAACTGAAAGAAACTACAGTGGAAAACCCTCAGCGTCTTCCTGCCACTCCGGTCCCGACCACCCTCCAGGGGTCTCCACCTCCACCCTCCCCTCAGCTGCTGATGAGGACGGGCACCGCTACCTCCGAATCCGCTGCCAGTGCCAACGGTACCCACCCTTTCTCCCCCACAGGCATCGGGCCGGACTTCTTCACCCCCGGCATGGCCAGCGTGGGCGCCACGTTCCCCCCGCTGGCTGGCAAAATGGCACTCAACTCTCTTCTTCAGAGGCAGCTCATGCAAACCATCTACACCAAAGCCCTCCAGGACCCCTCTCCCAGTTCGGTGCTGTTCGGGCCACCCCATTACGCTACCACCAACTCCCTCTCCAGCCCCCTGCCGCCCCAGTCGGCAGGCAGCCCGGAGGTTAACGGCATGGCGCCTTCGCCCAGCCAATCAGAGGGCGCGGGCAGCACGTCGGAAGGTGAGGAAATGGATACAGCGGAGATTGCCCGACAGGTCAAGGAGCAGCTGATCAAACACAACATCGGCCAGCGCGTGTTCGGCCATTACGTGCTGGGTCTCTCCCAAGGCTCCGTTAGCGAAATTCTGGCTCGGCCCAAACCTTGGAGCAAGCTAACCATCCGTGGCAAAGAGCCGTTTCACAAGATGAAGCACTTCCTGTCCGATGAGCAGAACATCCTGGCGCTGAGGAGCATCCAGGGCAGGCAGAGAGGTAACATCACCACACGGATCCGCACGCCTGAAACCGGCTCCGATGAAGCCATCAAGTCCATCTTAGAGCAGGCCAAGAGAGAGTTACAAGTGCAGAAAGCAGACGGCGTGGGGGAGAGGCATCGGCGATCAGGTTACCACAGAGGGTCGGGCAGCTATTTCCAAATATATGCACACAGTCTAAGACTTGAAGAATCTAACATAGATCTGAAACCCATGAGGATGACTAAGCAATTCGAGAGCTCTCAGCCTCCGTCCTCCTCCAGCAACTCGGACGAGAACATTCGCTCCATCCTCGAGCAGGCTCGCAGGGAGATGGAGGCGCAGCAGGTGGCACTGGAGCCCGTCTTGAAGGCCAGCTCCATGGGCCCGACGGACCTCTCGCTCCTGGGCTCCAAACTCCTGGGCTCCCCGCTCTCCACCCTGCCCTACACCCCCATCACCCAGTCCCTGAAGAAGCCCTCTAGTTCACCGCTGCTGGACTTCCACCATGGTGGAGTGAAGAAGGAGATGGGCGAGGTGGCCGTTTCGGATGTGGGTCTGGACGGAGTGGTGCCCAAGCTGGGCCGTTTGTCTGAGAGCGGTTTGGGTGGTGGCTCGTGGAGGGAGCACTGGTGGAGCACAGGCCTGTCAGAGCGCCGCGGGTCCAGCCAGCCCTCCGTTAGTGAAGACGCACACAGTCAAGAGGACAGCAAAGAGAAGCTCCCTCGGCTGGGCAGCACTGCGCCGGTGGCTCCTGCGTCGTCTCTGGATTACTGGAAGGACTGGCCGAGCTCAGAATCGCCGTACTCTCAGAGCTCAGAGCTCAGCCTGCAGATGCCCAGTGGCAGTGAGACCCCTCAGAGCAGCCCACTGCCTTCCTCCTCGCCCTTACTGTCCCTGCCCAAAGTGGCCAAACCTGTGGTGCCGCCGCTTACGCCAGAGCAATACGAGTACTACATGTACCAGGAGGTGGACACTGTCGACCTCACACAGCAGGTCAAAGAAAAACTCGCCAAGAACGGCATCTGCCAGCGCATCTTCGGGGAGAAGgTGCTGGGTCTCTCTCAGGGGAGTGTGAGCGACATGCTCTCTCGACCAAAGCACTGGAGCAAACTCACACAGAAGGGAAGGGAGCCGTTTATACGCATGCAGTTATGGCTGAACGGAGAGCTGGGACAGGCACTGATGCCAATGCCTGGACAGACACAAGAAATCACCCCCAAAACCTCGGCCAGCTGCAGTCCTGCCCCAGAATCCCCCCTGAGCTCGGCTGAGGAGTCTGTGAAGAGCCAGCAGGAGGAGCAGATGTGCCGATCCTCCGTCCAGGAGCCCAGCGAAGCCTCCGAGTCTCAGCCCGGGACGCCGCTGCCGCTGCCTCTGCCGGGACAGGCCGGTCTCAGCATTCAGGAGATGGTGGCCATGTCAGCCGAGCTGGACACGTACGTCATCACGAAAAAAGTCAAAGAAGTCCTCACTGATAACAACCTGGGCCAGCGTCTGTTCGGGGAGAGCATTCTGGGTTTGACGCAGGGCTCAGTGTCTGATCTGCTGGCTCGACCCAAACCCTGGCACAAGCTCAGCCTGAAGGGTCGCGAGCCGTTCGTGCGCATGCAGCTGTGGTTGAGCGACCCGCGCAACGTGGAGAAGCTGATGGACATGAAGCGCATGGAGAAGAAAGCCTACATGAAAAGGCGCCACAGCTCCATCGGTGAGAGTCATTCGCTGGAGAGCGGCTTGTCTGCAGCAGACCTGACACAGGGTGCCAGTCCCCAACACCTATCCCAGCAGCAGCCGCCGCAGCAGATGCAGCCTCAACAGCAGCAGCCCCAGCTGAAGAAACCCCGGGTGGTTCTGGCTCCGGAAGAGAAGGAAGCTCTGAAGCGGGCCTACCAGCAGAAGCCTTACCCCTCCCCTAAAACCATTGAGGAGTTAGCGAGTCAGCTCAACCTCAAAACCAGCACCGTCATCAACTGGTTCCACAACTACAGGTCTCGTATCCGGCGAGAGCTTTTTATCGAAGAGATCCAGGCAGCAGCAGGTGAAGGTGGATCTCCATCTGCACGGCCTGGAAAATCTGGAGGCGAGGGAGAAAACAGCTGCGACGGCACTGAGTCCGACAGCACGGCAGAAGGCCGACCGAGTGGCTCAGAGGAGCGCAAGGGCTTCCTGGAGAGCCCGGGCCTCGGCCACAGAGAAGAAGATGGCGAGGGCGAGTTTCCTAGTGCCTCGGGCACCAGCCGGCCACGAGGAGGCATCATAGACAGCCTGTTCGGCATCCCCGAGTCCATATCCGTCACCAATGCTGCCACGACCCCCTGCCGAAATCCAAAGGATAGCAGTCTACGCAAGAAGAAAGCAGCCAACCTCAACAACATCATCCACCGGCTGGAGAAAGCGGCGAACCGAGACGAGCCTCACGAATGGGAGTTCTGA
>TCONS_00005321
ATGGCGGCCAATGCGGGATCGATGTTTCAATATTGGAAACGCTTTGATTTGCAGCAGCTCCAGAAAGAACTGGATGCCACCGCCACAGCCCTGGCCAACCGACAGGATGAGAGCGAGCAGTCCAGGAAAAAACTCATCGACCAAAGCCGCGAGTTCAAGAAGAATACTCCAGAGGATTTGCGTAAACAGATAGCTCCTTTGCTGAAGGGCTTCCAAGCAGAGATCGACGCCTTGAGTAAAAGAAGTAAAGAATCAGAGGCTGCTTTCCTCAGCGTGTACAAGAGATTAATCGATGTCCCAGatccCGTCTCGGCACTGGAAGCAGCTCAGCAACTCCAGGTGACGGTTCGGAAGATGCACGACTTGGAGACCGAAAACCAGAGGCTCAAAGATACACTACAAGAGTACGAACGTGAAATTTCAGAGGTTAAAAACCAAGAAGTCACTATTAAAGCACTTAAAGAGAAGCTGGAGCAGTATGAGCGTTCTCTGCAGGCCAAGAACACAGAGGAGGCTGTCGAGCCGAACTTGGACTCATCAGAAAGAGAAGAGAGGCAAAGCAAAGGAGAAAACCTTCCAAACAACTATGCAGACAAGGAGAGTCAGCCAGAGCAGAGCCAGGAGAGCAGGACAGAAGACTCGGATGTGAAAACACAGTCCTTACAAACAGcACTTGAAGCAACTCAGGCAGAACTCCACGAACTGAAGACGAAATATGATGAAGAATCCACAGCAAAggCCAATGAGATTGAAGCGGTGATGACAGACTTGGAAAGAGCCAATCAGAGGGCCGAGACGGCAGAGAGGGAGGCCGGGACCCTGAGGGAGCAGCTCACTTCTGCTGGAAAGACCATGCAATCATCCAATCAGATCCAGAACGCTCCGGAAAtgGACAAGTCTCTGGAGGCAGAGCTGGGTGCGAAAGAGAGGGAGGTGGAGCGTTTGGCTGAGGACGTTCAGAGACTTCAGGCCAGTCTGGCTCAGCTCAGCGAGACATCAACCAACCAGATCAGCCAGCTCGAGCAGCAGCTCAGCTCCAAAGAGGCACTACTAAAGCAACTTGAAGAAAAGCTTCAAGATCAGTCAGACTACGAGGAGATCAAACGAGAACTCTGCACCCTGAAATCAGTGGAGCACAACTCATCAGATCATCACTCTTCAGCGCAGGACTCATCCAAGCCACTGGAGATGTTGCTGACAGGGAAAGACCATAGCCAGCTGTCAGAGAGCGCTTTGAAACGACTGGCCAACAGTGACTTCACTGGAGCAGTGGGCCGTAAACTGAAAGAAACTACAGTGGAAAACCCTCAGCGTCTTCCTGCCACTCCGGTCCCGACCACCCTCCAGGGGTCTCCACCTCCACCCTCCCCTCAGCTGCTGATGAGGACGGGCACCGCTACCTCCGAATCCGCTGCCAGTGCCAACGGTACCCACCCTTTCTCCCCCACAGGCATCGGGCCGGACTTCTTCACCCCCGGCATGGCCAGCGTGGGCGCCACGTTCCCCCCGCTGGCTGGCAAAATGGCACTCAACTCTCTTCTTCAGAGGCAGCTCATGCAAACCATCTACACCAAAGCCCTCCAGGACCCCTCTCCCAGTTCGGTGCTGTTCGGGCCACCCCATTACGCTACCACCAACTCCCTCTCCAGCCCCCTGCCGCCCCAGTCGGCAGGCAGCCCGGAGGTTAACGGCATGGCGCCTTCGCCCAGCCAATCAGAGGGCGCGGGCAGCACGTCGGAAGGTGAGGAAATGGATACAGCGGAGATTGCCCGACAGGTCAAGGAGCAGCTGATCAAACACAACATCGGCCAGCGCGTGTTCGGCCATTACGTGCTGGGTCTCTCCCAAGGCTCCGTTAGCGAAATTCTGGCTCGGCCCAAACCTTGGAGCAAGCTAACCATCCGTGGCAAAGAGCCGTTTCACAAGATGAAGCACTTCCTGTCCGATGAGCAGAACATCCTGGCGCTGAGGAGCATCCAGGGCAGGCAGAGAGAGAACCCAGGCCAGAACCTGAACAGAGTGTTTCAGGATGTTCCGAAGCGAAGAGGCGGCTCTGAAGGCTCCACGCGGCCAGGTAACATCACCACACGGATCCGCACGCCTGAAACCGGCTCCGATGAAGCCATCAAGTCCATCTTAGAGCAGGCCAAGAGAGAGTTACAAGTGCAGAAAGCAGACGGCGTGGGGGAGAGGCATCGGCGATCAGGTTACCACAGAGGGTCGGGCAGCTATTTCCAAATATATGCACACAGTCTAAGACTTGAAGAATCTAACATAGATCTGAAACCCATGAGGATGACTAAGCAATTCGAGAGCTCTCAGCCTCCGTCCTCCTCCAGCAACTCGGACGAGAACATTCGCTCCATCCTCGAGCAGGCTCGCAGGGAGATGGAGGCGCAGCAGGTGGCACTGGAGCCCGTCTTGAAGGCCAGCTCCATGGGCCCGACGGACCTCTCGCTCCTGGGCTCCAAACTCCTGGGCTCCCCGCTCTCCACCCTGCCCTACACCCCCATCACCCAGTCCCTGAAGAAGCCCTCTAGTTCACCGCTGCTGGACTTCCACCATGGTGGAGTGAAGAAGGAGATGGGCGAGGTGGCCGTTTCGGATGTGGGTCTGGACGGAGTGGTGCCCAAGCTGGGCCGTTTGTCTGAGAGCGGTTTGGGTGGTGGCTCGTGGAGGGAGCACTGGTGGAGCACAGGCCTGTCAGAGCGCCGCGGGTCCAGCCAGCCCTCCGTTAGTGAAGACGCACACAGTCAAGAGGACAGCAAAGAGAAGCTCCCTCGGCTGGGCAGCACTGCGCCGGTGGCTCCTGCGTCGTCTCTGGATTACTGGAAGGACTGGCCGAGCTCAGAATCGCCGTACTCTCAGAGCTCAGAGCTCAGCCTGCAGATGCCCAGTGGCAGTGAGACCCCTCAGAGCAGCCCACTGCCTTCCTCCTCGCCCTTACTGTCCCTGCCCAAAGTGGCCAAACCTGTGGTGCCGCCGCTTACGCCAGAGCAATACGAGTACTACATGTACCAGGAGGTGGACACTGTCGACCTCACACAGCAGGTCAAAGAAAAACTCGCCAAGAACGGCATCTGCCAGCGCATCTTCGGGGAGAAGgTGCTGGGTCTCTCTCAGGGGAGTGTGAGCGACATGCTCTCTCGACCAAAGCACTGGAGCAAACTCACACAGAAGGGAAGGGAGCCGTTTATACGCATGCAGTTATGGCTGAACGGAGAGCTGGGACAGGCACTGATGCCAATGCCTGGACAGACACAAGAAATCACCCCCAAAACCTCGGCCAGCTGCAGTCCTGCCCCAGAATCCCCCCTGAGCTCGGCTGAGGAGTCTGTGAAGAGCCAGCAGGAGGAGCAGATGTGCCGATCCTCCGTCCAGGAGCCCAGCGAAGCCTCCGAGTCTCAGCCCGGGACGCCGCTGCCGCTGCCTCTGCCGGGACAGGCCGGTCTCAGCATTCAGGAGATGGTGGCCATGTCAGCCGAGCTGGACACGTACGTCATCACGAAAAAAGTCAAAGAAGTCCTCACTGATAACAACCTGGGCCAGCGTCTGTTCGGGGAGAGCATTCTGGGTTTGACGCAGGGCTCAGTGTCTGATCTGCTGGCTCGACCCAAACCCTGGCACAAGCTCAGCCTGAAGGGTCGCGAGCCGTTCGTGCGCATGCAGCTGTGGTTGAGCGACCCGCGCAACGTGGAGAAGCTGATGGACATGAAGCGCATGGAGAAGAAAGCCTACATGAAAAGGCGCCACAGCTCCATCGGTGAGAGTCATTCGCTGGAGAGCGGCTTGTCTGCAGCAGACCTGACACAGGGTGCCAGTCCCCAACACCTATCCCAGCAGCAGCCGCCGCAGCAGATGCAGCCTCAACAGCAGCAGCCCCAGCTGAAGAAACCCCGGGTGGTTCTGGCTCCGGAAGAGAAGGAAGCTCTGAAGCGGGCCTACCAGCAGAAGCCTTACCCCTCCCCTAAAACCATTGAGGAGTTAGCGAGTCAGCTCAACCTCAAAACCAGCACCGTCATCAACTGGTTCCACAACTACAGGTCTCGTATCCGGCGAGAGCTTTTTATCGAAGAGATCCAGGCAGCAGCAGGTGAAGGTGGATCTCCATCTGCACGGCCTGGAAAATCTGGAGGCGAGGGAGAAAACAGCTGCGACGGCACTGAGTCCGACAGCACGGCAGAAGGCCGACCGAGTGGCTCAGAGGAGCGCAAGGGCTTCCTGGAGAGCCCGGGCCTCGGCCACAGAGAAGAAGATGGCGAGGGCGAGTTTCCTAGTGCCTCGGGCACCAGCCGGCCACGAGGAGGCATCATAGACAGCCTGTTCGGCATCCCCGAGTCCATATCCGTCACCAATGCTGCCACGACCCCCTGCCGAAATCCAAAGGATAGCAGTCTACGCAAGAAGAAAGCAGCCAACCTCAACAACATCATCCACCGGCTGGAGAAAGCGGCGAACCGAGACGAGCCTCACGAATGGGAGTTCTGA

Function

symbol description
cux1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in brain. Orthologous to human CUX1 (cut like homeobox 1).

GO:

id name namespace
GO:0048193 Golgi vesicle transport biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0000139 Golgi membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5868 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in brain. Orthologous to human CUX1 (cut like homeobox 1).

Ensembl:

ensembl_id ENSDARG00000078459

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005320 False 5997 mRNA 0.43 5 32898533 32920690
TCONS_00005323 False 4401 mRNA 0.57 25 32903341 33156789
TCONS_00005322 False 4407 mRNA 0.57 25 32903341 33156789
TCONS_00005321 True 4488 mRNA 0.57 26 32903341 33156789

Neighbor

gene id symbol gene type direction distance location
XLOC_002875 NA coding downstream 1589 32894997 ~ 32896944 (-)
XLOC_002874 kctd7 coding downstream 7916 32881586 ~ 32890617 (-)
XLOC_002873 rabgef1 coding downstream 18235 32854901 ~ 32880298 (-)
XLOC_002872 trim37 coding downstream 46686 32809620 ~ 32851847 (-)
XLOC_002871 NA coding downstream 118243 32779880 ~ 32780290 (-)
XLOC_002877 NA coding upstream 1800 33158589 ~ 33164573 (-)
XLOC_002878 bcl7ba coding upstream 83621 33240410 ~ 33251876 (-)
XLOC_002879 tbl2 coding upstream 97163 33253952 ~ 33265566 (-)
XLOC_002880 PRDM15 coding upstream 112582 33269371 ~ 33297864 (-)
XLOC_002881 c2cd2 coding upstream 149189 33305978 ~ 33343244 (-)
XLOC_002870 NA non-coding downstream 220288 32676810 ~ 32678245 (-)
XLOC_002867 NA non-coding downstream 307071 32584685 ~ 32591462 (-)
XLOC_002863 NA non-coding downstream 647687 32216413 ~ 32250846 (-)
XLOC_002883 dre-mir-454a non-coding upstream 220029 33376818 ~ 33376941 (-)
XLOC_002884 dre-mir-301a non-coding upstream 220212 33377001 ~ 33377086 (-)
XLOC_002885 dre-mir-130a non-coding upstream 220341 33377130 ~ 33377214 (-)
XLOC_002890 NA non-coding upstream 506376 33663165 ~ 33664789 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_15903075_15957836 CUX1A coding CI01000304 null 15903075 ~ 15957836 (-)