XLOC_028763 (rps16)


Basic Information

Item Value
gene id XLOC_028763
gene name rps16
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 21648010 ~ 21652812 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055749
ATGCTTCCTTATTTTGCCAAAGAAACATAAGTATTATTAAATACTTACATTAAAAGTTGTTGTTTGTTGTCAAATTGTGGACTGTAATTTTGAAGTGAGAACTGTCGCAAATACTTTTTCACGAAAGCATGTGTTTACGACAGCGCCCCTGCTTCTGGGCTCAGGAAACCCTTGTGCGGCCTTTCCGAACAGCGCTCGGTATCTGAAAGGTGCGTCTGCAAGTCCTTCTCCATAGTGCAGTCAATTAAAGATTAATTTCATCTCAAAGTAAACGTTATCTATTCTGTCTTTGTTTCAGAATCATGCCGGCTAAAGGTCCCCTACAGTCTGTCCAGGTTTTTGGACGTAAAAAAACAGCTACTGCTGTCGCCCACTGCAAGAGGGGAAATGGGCTTATTAAAGTCAACGGAAGACCCCTTGAGATGATTGAGCCCGTCACTCTGCAGTACAAGctgCTGGAGCCTCTTCTGCTGCTGGGTAAGGAGCGCTTCGCTGGCGTGGACATCAGAGTCCGTGTGAAGGGTGGTGGACACGTCGCTCAGGTCTACGCCATCCGTCAGGCCATCTCCAAAGCCCTGGTTGCCTATTATCAGAAATATGTGGATGAGGCCTCCAAGAAAGAGATCAAGGATATCTTAATTCAGTACGACAGGACCCTGCTGGTTGCTGATCCCCGCCGCTGCGAGTCCAAGAAGTTTGGTGGACCTGGAGCTCGTGCTCGCTACCAGAAATCCTACCGTTAAAATCTCTCTGTACATTttcatataataaatttaaagggGGAAAACATGCTGTAgtcttgttgtttttattaaaactacttGTAGTTTTGAGTTTATTTACTGCAGAAAAGCGCTAAACTGTCGTTCAATTATTTGTGTACCAAATATTTTTAAGGCAAATTTAGAATAAGATTTAATTTGGTGACATTGTGTGTGTAAAGATCACAGAGCAGTCCCAAGTCACTcagttgttatttaaaaaatctatacaTGCTCTCTATACTTCAAAACACTGGTGTTTACTCCTTTTTCAGTAggaaatgaatcatttgaaacacATTTAGTATAGCCTCTTGttatattgattttaataagCACAAGCATAGATTAAGCATCTGTTCTTTTGTATTATAACACTTGGTAGTTTGGTGTAGACCACAATATTGGATATCTCATTTTTGACTCATTGGCTGTGAAAGAAGAGATATGAAAAATCTGCAAACTTGATTAAATGCAGACAATATTTCTTCTAGACAGAAATAGCCTTGATTGCTGACATGGCAATCAATAAAAGTACATTACATCACATTCTAGAACAAATGTATGCTAATAGCTGTGATGTGATTTTGATTTTTACAATGCTAGGATATACTAAGATAATTAATTGGAGGTTTATACAACAACCTTTAGAAAAAAGTTTTGGTTTGGTTCAGatttttctagtaaaatattcagAAGAATGATATAAAAAGCAGCTACTGATGAGGTCAAAATGTACCATGGTATTTCCATTCAATATATCTTTTTTGTTCAATAGATGAAAAAGGAACAAGTGCAGAGTAAATGACTGTTTGAATGAACTACCCCTTTACAATAAGTGGGATGGGTTTTTTTTAATACAAGAGGGCAGTAGTCCGATTTTGGTGGTGTGTTTGAATTAGAAAGTTTAGTTGGATATTAAAATGAGATTTTCCTGTACCATAATCCAATTCATTTagtaaaagttaaataataacgAAAATAAGTAGTCATTGATTGCTTCTCCACTTAATCTAAATCTAAACCAG
>TCONS_00055750
CCTTGTGCGGCCTTTCCGAACAGCGCTCGGTATCTGAAAGAATCATGCCGGCTAAAGGTCCCCTACAGTCTGTCCAGGTTTTTGGACGTAAAAAAACAGCTACTGCTGTCGCCCACTGCAAGAGGGGAAATGGGCTTATTAAAGTCAACGGAAGACCCCTTGAGATGATTGAGCCCGTCACTCTGCAGTACAAGctgCTGGAGCCTCTTCTGCTGCTGGGTAAGGAGCGCTTCGCTGGCGTGGACATCAGAGTCCGTGTGAAGGGTGGTGGACACGTCGCTCAGGTCTACGCCATCCGTCAGGCCATCTCCAAAGCCCTGGTTGCCTATTATCAGAAATATGTGGATGAGGCCTCCAAGAAAGAGATCAAGGATATCTTAATTCAGTACGACAGGACCCTGCTGGTTGCTGATCCCCGCCGCTGCGAGTCCAAGAAGTTTGGTGGACCTGGAGCTCGTGCTCGCTACCAGAAATCCTACCGTTAAAATCTCTCTGTACATTttcatataataaatttaaagggGGAAAACA
>TCONS_00055751
CTTTCCGAACAGCGCTCGGTATCTGAAAGAATCATGCCGGCTAAAGGTCCCCTACAGTCTGTCCAGGTTTTTGGACGTAAAGTGAGTAAATTCAGACATCAATGTTTCTCATGTGCTCGCGCACGGCGCTGATGAGGCACTCAAGTTAGCCGGCTATGCTAACAGCAATATGCGACTGTAAACCACTGTGGTTTTGTGCATGCTCAGAAATAAACTGAACAAACGCACATAACCCTTAGTAACTACAAACAAGGTTATGTGCTTTTACGCCGCGTAAATGTATATAATAGGCCATGATTCTCTAGATCGCAAGTGATGGGGTTTTGTATTGACAATTGCTGTTTTTTGACACGTGGGACAGTTAAATTCTTACATCCAGAGATTTATAGAATAAAAATTGACCTTGAACTTTATCTAGATATTTTCTGTACTTGCTTATTTGGTTAATATAGATGTGTTGTATGTCTTGCTAACTGTTAGCTTGTATCGTTACTTGTGTGTAATGTTAGCAGTAGTTTGCTTCCTCTGTAGTGTCATCAACTATGTGCTAGCTCTTAAATAGTCATTTTGGTATAATGGAACGAATGGTTTTAATGCAACAAATTCTAACGTTACAGGTATATTTAAAAGTTCTAATTAACGTTAGCTTTTAACTCATTTGTAATTCCCCATGCTGCTAAATGTGGACATACACCTAAATGTATTGCACTTTTAACAATACATGAACAGATAATAAGTGTGCCTAGCATTAAGTGTTTTCAGATGCTTAATTAAAAAGTGAGGCCATAGAAGATATTGATACTGCTCATTTGTAGTCTCTGGTGTCATAACATCTGagttttcttctttttctgttattaaatactttaattg

Function

symbol description
rps16 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS16 (ribosomal protein S16).

GO:

id name namespace
GO:0006412 translation biological_process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko05171 Coronavirus disease - COVID-19
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-050506-107 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS16 (ribosomal protein S16).

Ensembl:

ensembl_id ENSDARG00000045487

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055749 False 1789 mRNA 0.37 5 21648010 21652812
TCONS_00055750 False 531 mRNA 0.51 6 21649010 21652643
TCONS_00055751 True 873 processed_transcript 0.36 2 21651671 21652632

Neighbor

gene id symbol gene type direction distance location
XLOC_028762 NA coding downstream 18 21634012 ~ 21647992 (-)
XLOC_028761 NA coding downstream 19012 21592244 ~ 21628998 (-)
XLOC_028760 ppp1r12a coding downstream 63852 21488990 ~ 21584158 (-)
XLOC_028759 pawr coding downstream 181185 21323006 ~ 21466825 (-)
XLOC_028758 rassf8b coding downstream 1126569 20507105 ~ 20521441 (-)
XLOC_028764 BX569790.2 coding upstream 3433 21656245 ~ 21657106 (-)
XLOC_028765 lin7a coding upstream 98950 21751762 ~ 21851473 (-)
XLOC_028766 ppfia2 coding upstream 309504 21962316 ~ 22207873 (-)
XLOC_028767 BX537162.1 coding upstream 583546 22236358 ~ 22237294 (-)
XLOC_028768 NA coding upstream 629913 22282725 ~ 22291753 (-)
XLOC_028756 BX248410.1 non-coding downstream 1251840 20396049 ~ 20396170 (-)
XLOC_028746 NA non-coding downstream 1523952 20122913 ~ 20124058 (-)
XLOC_028741 NA non-coding downstream 1600126 20044867 ~ 20047884 (-)
XLOC_028777 NA non-coding upstream 1466607 23119419 ~ 23125640 (-)
XLOC_028778 NA non-coding upstream 1507203 23160015 ~ 23210241 (-)

Expression


Co-expression Network