XLOC_028768



Basic Information


Item Value
gene id XLOC_028768
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 22282725 ~ 22291753 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00058204
TCTCCCTCAGAGGATTCAGAGATCATCCATGGACCTCAGGTCTCCAGTAGAGACAGATGACGGTCTCTGCCTCGGCCTACACACTCTACGTTTACAGCAGAAACCCTCAAGAGACACGTTGCTATTGGTTTTGGTCTCTGCGGAGCTGAAATGGAATGACAAGCATAGACTGATCAACATCCTGAAACCAGATACAGACCTTCGCCTGTATTCAAACAGAAATTATGTGACAGATCAGTGATGAATGGGATCGGGAGGACTTTCCCCGTCCTTGTTTGCCAGCATCTGGCCACACTCCAAGGGACTCAGAGCTCAGAGGGTCTCTGTACAGCTCAGGTGGATTACTGTAAATCAATAGCAGAATTGATGGGGTTCCAAGCTTCGGCCTTAGCCTGACAAAGAAAAATACACTTGTGAATAACGATTAAAAAACGCTAACAATACCTTTGTGACAGATCAACTACTTTCAGGGTAgctctttcactctctctttctGAGTGCATTTTATGGACCTGGGAGTTTTCTTCATC

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00058204 True 530 lncRNA 0.46 2 22282725 22291753

Neighbor


gene id symbol gene type direction distance location
XLOC_028767 BX537162.1 coding downstream 45431 22236358 ~ 22237294 (-)
XLOC_028766 ppfia2 coding downstream 74852 21962316 ~ 22207873 (-)
XLOC_028765 lin7a coding downstream 431252 21751762 ~ 21851473 (-)
XLOC_028764 BX569790.2 coding downstream 625619 21656245 ~ 21657106 (-)
XLOC_028763 rps16 coding downstream 629913 21648010 ~ 21652812 (-)
XLOC_028769 hcls1 coding upstream 8577 22300330 ~ 22311610 (-)
XLOC_028770 golgb1 coding upstream 21103 22312856 ~ 22338906 (-)
XLOC_028771 orc5 coding upstream 61712 22353465 ~ 22363709 (-)
XLOC_028772 kmt2e coding upstream 132698 22424451 ~ 22472653 (-)
XLOC_028773 kdm7aa coding upstream 193077 22484830 ~ 22519525 (-)
XLOC_028762 NA non-coding downstream 634733 21634012 ~ 21647992 (-)
XLOC_028761 NA non-coding downstream 653727 21592244 ~ 21628998 (-)
XLOC_028756 BX248410.1 non-coding downstream 1886555 20396049 ~ 20396170 (-)
XLOC_028777 NA non-coding upstream 827666 23119419 ~ 23125640 (-)
XLOC_028778 NA non-coding upstream 868262 23160015 ~ 23210241 (-)
XLOC_028779 AL929141.1 non-coding upstream 934980 23226733 ~ 23226849 (-)
XLOC_028780 CR394543.1 non-coding upstream 1127567 23419320 ~ 23419455 (-)
XLOC_028782 AL929006.1 non-coding upstream 1160064 23451817 ~ 23451931 (-)

Expression



Co-expression Network