G978694


Basic Information

Item Value
gene id G978694
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 41421492 ~ 41425683 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1114410
aatattacaaaggattattcaaaacatttttgcaaaagcAGCAAAACATTCTGATTGTTGTCTTTTAAAAAAGCCCTTAATATGGTGTGTACGTGGTGcccccccccaaaaaaaaaagaaatgctaATTAGaggctaatgtggctatcataaagaactacaaatgcttTGATGATCTCGGcgagactgccgaatcgaggcaaaggtaagaatctctgaattaactatctaatgttagctaaatgtagttaTGAAAAGCGTCAACATTTATATAAATTGACAATTATGTAAACTGTCTTGTGCatgttttaaattgacacaaaacCAGTTAGCAAAGGTGTTacagatgacgtgcaggagcttgcagggatttgtagtctttcatgatgtctactttgatgctaattggAATGTTCAAATCTGAAAGTAAATAGAGCTAAATATAGAGATACaatttattttaagtgtttctaaagtTCCCTAACAGAAAAATTAATGGTGGAAAAAACGAtcggaaccatttccctgtttgaccgctagagGCTCGACAAGAGGGCGCCAGCATGAGGTCATCTCAAAAGGCACAGGAGACGCCAGACCAGGGGCAAACTACAACAACAAGGGGTTCTCTGTCAATAAGCGGCATGATCGAAAATATTCTTCGAATTCTCAGTAATACTCATGTTTTCTTTGGACAATACTACACTCTTGAGCTGATGCAAATTAAGGTGATGTGAAAGTGACATCAAAAGAGTATGGACTTAATGTGACGTTTCAAATGACAGGTACAAAAATGGGCCAATAGGGGGCAATGTGGGTCAACTATTGACGGGGGTTCAAAGCCAAAGATCCACTTCGTAATTTGTTTCCCTGTGTATACATGCATTTCAGCCCAATCAAAGCATTCCTCTCACTGTAGCTCCCAAGGCTGCCCGATGTATAAATAGGACATTCCCAAGGTGTATGAATTCATAAATCTTTAGAACGTGAACACAACCTACGTACTGTACCAGCACCCGAGATGTCAAATCCTGGGGAAACCATGGTCCCACACCTGGTAAAATACTGCTTTTAACACTGTACAAGAAGCAACACATCTTGCTAACGTCAATAACCATTGTCATTAGTTACTGACATGTACACACATTCCTGTGTACCCTCAATGTCACGATGAGATCCCCAATGACGTTACATTTAGGCTGTACTCAAGCCAACTGAACGTATGAGGATAATATTATATACAATTACAATAGTATGACTGACTTGAGAGGCTTCACACATAATGGACAGAGGCTTTCATTTCAGTCACTAATACTACGATACTACAGCTGAGCCCGGGTTGCCTTTGTATGTGAGCATGACGAGATAGATACACACTCAGTCAAAGCCCTAGAAAGCCACATGGACAGTTGAAGGGAGAAAGGAAGATCCCATGCTACAAAAGATCACATTTTTAAAACAACCTTGTTAAAGAATTGTCCATGCCAAGCACAAAAAAGTCAGAGCTAAAAAGACCACAAAAGGAAGGAAAGTGCAACCCGATACTGAAAGACGGAGAAAAGTGCATTTACAAAACCAAAATTAGGCCATGATGCAAAAATAATAACCACATCCCACAAGTGTTGAACAGCATTCACACAAGGCAACCAGTATTCTCATAGTAAGCGTTCGCATCCCCTAGATCACAGGTGTCTAAACCTTGGTCTCTAGGGCATTACAGAGGGTAATCGGCTAGTTTGTAGTGGCAGACTAAATCAGTTTCCCAAACCGAAACAGACTAAGAGAACTTACAATACTAACAGCCCCTTCGCCTACTAACTTAAGGCCTGTGTTTCCACTGACCACCCGAAGACCCAGAAACTCTCCGGGAGTAGCGCTGGGGTCTGCAGCCCCAGAGGGAGACTCAGACGTGGGAGGAAGGCGAGGGAGAGGCCTGCCTCTCTGGCCTGGTTGAGTGGGTGAGACTGGGTGTGAGTCATTAACCAGAGACTGAATCAATCAGCTCTACTATTATCCTTTGTAGAACCTGTCTGCAACTGTATACCACTACCTTACACTGTACATTTTGAGTATACTCCGATTCCTAATAGTGGATGTGCACTTCCATGAGGGAAGGCTTTGTAGGGCATGTCTACCATTAGTAAGACAACTTTAATAGCTCATCCTTGGGGCACTGAAAGGGGACATGGAAGTCAAATAGCTCTATGTTCCTATGTCAACCCCAGATTAATGTTCCAATATCCTAGTCCGAAATAGGGGCGCAAGGACTATTTCAGTGTTCCAATTCCAAATATGTAGGTTTGcagttttttggggggtaaaaATCAGCCCAATTCTCACTTGGGTCTCATGAGATCCTATCGCATAGCTATTTCAGTAGCTGTTGATGACTAGAACACGCATCCGGTGAAGAAAagctaaaaaaaacacacaaaaaaaaacacatttcacgCCATCCATCTATCTCCCACAGTCACCTGGGTAAAGGCGGGGGTGGAAATCTCAAACCCACAAATAGAACGAAGGTGGTAAAGAGAAACATGTTACAAAGTCTTCTTTTTTCCCACATAACTACCCCTTTTGAGCAAAAAGAAGGCAATTAAAATACAGTAATAATGCTTTGTTAGTTATTGTTTTCCTTCTTCTTCCAACTTGCCTGTTGTAACACAATGTCTTGGATACATTAAGATCTTGACGGTGCCGTGGGTTATTAACATGTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1114410 True 2719 lncRNA 0.41 3 41421492 41425683

Neighbor

gene id symbol gene type direction distance location
mblac2 mblac2 coding upstream 232869 41185100 ~ 41188623 (+)
lysmd3 LOC106580159 coding upstream 245356 41172134 ~ 41176136 (+)
LOC118937444 NA coding upstream 478254 40942000 ~ 40943238 (+)
arrdc3a LOC106580165 coding upstream 500066 40913124 ~ 40921426 (+)
LOC110535697 LOC106580168 coding upstream 545273 40845782 ~ 40876219 (+)
LOC110535023 nol6 coding downstream 140509 41566192 ~ 41567177 (+)
LOC118936418 NA coding downstream 156044 41581727 ~ 41585824 (+)
LOC110535708 LOC106580153 coding downstream 169853 41595536 ~ 41604715 (+)
LOC118937352 NA coding downstream 200594 41626277 ~ 41632041 (+)
LOC118937445 NA coding downstream 244113 41669796 ~ 41699250 (+)
G978681 NA non-coding upstream 23869 41397328 ~ 41397623 (+)
G978588 NA non-coding upstream 157464 41263802 ~ 41264028 (+)
G978586 NA non-coding upstream 160250 41261043 ~ 41261242 (+)
G978488 NA non-coding upstream 297369 41114380 ~ 41124123 (+)
G978479 NA non-coding upstream 314504 41106666 ~ 41106988 (+)
G978735 si:dkey-263f15.2 non-coding downstream 47921 41473604 ~ 41499222 (+)
G978751 NA non-coding downstream 78516 41504199 ~ 41504496 (+)
G978752 NA non-coding downstream 79035 41504718 ~ 41504975 (+)
G978754 NA non-coding downstream 82296 41507979 ~ 41508240 (+)
G978755 NA non-coding downstream 82627 41508310 ~ 41508592 (+)
G978396 NA other upstream 405404 41003076 ~ 41016088 (+)
G978255 NA other upstream 653263 40767836 ~ 40768229 (+)
G976017 NA other upstream 2363481 39057676 ~ 39058011 (+)
G974184 NA other upstream 3358392 38057798 ~ 38063100 (+)
LOC110535015 LOC106578726 other upstream 3378162 37866715 ~ 38045713 (+)
G979689 NA other downstream 652809 42078492 ~ 42078855 (+)
G979965 NA other downstream 1102837 42528520 ~ 42533308 (+)
G980019 NA other downstream 1206141 42631824 ~ 42636709 (+)
G981690 NA other downstream 2234691 43660374 ~ 43715297 (+)
G982236 LOC106580137 other downstream 2855242 44280925 ~ 44285969 (+)

Expression


Co-expression Network