XLOC_028773 (kdm7aa)


Basic Information

Item Value
gene id XLOC_028773
gene name kdm7aa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 22484830 ~ 22519525 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055764
ATTAGGAAGATGGCGGCTGCCCCGCTATACTGTGTCTGCCGGCAGCCTTATGATGTTAACCGGTTTATGATCGAATGCGACATCTGTAAAGACTGGTTTCACGGCAGTTGTGTTCAGGTAGTGGAGCACCATGCTGCTGATATCGATGTTTATCACTGTCCAAACTGTGAGCCCATCCATGGACCCTACATGATGAAAAAGCATAACAACTGGCACAGGCATGACTACACGGAGCCAAATGATGGCACACGGCCCGTGCAGGCAGGAACTGCTGTGTTTGTGAAGGAACTCCAGGCCAGGAGCTTTGCCAGCGGTGATATTCTGGTGCAGATGCAGGGGAATCAGGTGACCAAACGCTTCTTGGAGAAAGAGGGCTTCAATTACCCTATAGTGGTGCATGACCTGGATGGACTGGGGCTGAAACTGCCCCCTCCATCATTCTCTGTCAGTGATGTGGAGCATTACGTTGGTGCAAATAAAGTCATCGACGTGATTGATGTGGCGAAACAGGCAGACAGTAAGATGAAGCTGGGAGAGTTTGTCAAATATTACTACCAACCTGAACGGCCCAAAGTGTTGAATGTTATCAGCCTGGAGTTCTCTGATACAAGgaTGTCAAATCTGGTGGTGGTTCCTGATATCGCTCAAAAGATGTCCTGGGTTGAAAACTACTGGCCCGATGACTCGTTCTTCCCCAAACCGTTCGTGCAGAAGTATTGTCTTATGGGAATGAAAAACAGCTACACAGATTTCCACATCGACTTTGGAGGAACTTCAGTGTGGTATCATGTACTTTGGggagagaagattttctactTGATCAAGCCAACGAAAGCTAACCTTGCACTATATGAGGCCTGGAGCTCATCGCCTAATCAAAGCGAAGTTTTCTTTGGGGAAAAAGTCGACAAGTGTTACAAATGCGTGGTGAAGCAGGGAACTACCATCTTACTGCCTACTGGCTGGATTCATGCTGTTCTCACTTCTCAGGACTCGATGGCGTTTGGAGGAAACTTCTTGCATAACTTAAACATAGACATGCAGCTCAGGTGTTATGAGATGGAGCGCAGACTGAAGACTCCAGATCTCTTTAAGTTCCCATATTTTGAGGCCATCTGCTGGTATGTGGCCAAAAACCTGCTGGAGACTCTTAAAGaacTGCGTGAGAATAAATGTGAAGCTCAGGGTTTTCTGGTGAACGGAGTGAAAGCTTTAATCTCATCACTGAAGATGTGGTTGAGGAGGGAGCTCACTCAGCCTAACAGCGAAGTGCCAGACAACATCAGACCAGGACACCTCATTAAAGCTCTGAGCAAAGAGATCCGACACCTCGAGGACGATTCCAATAAAGCTGTGAAAACTCAGGGAAGTGCTGAATGTTCTTTATCCCGCTCGACACTGGAGAAAGGAGATCAAGCCCAACAGGCTGCTCGGCGACTGCaagatcatcatcatcacagaCGCCgccaccaccatcaccaccatcatcatcatcatcaccaccaccatcatcacAGCCGAAAACTGCCCTCAAACCTGGACGTGCTGGAGCTCCACACACTGGAGGTGTTGAAGAGACTGGAGGTTGGCCAGCTGAAGGAGGACTCGGCCTTCAGCTCCAAAGTCAATGGCAAGTTCAAGAAAGTGTGTCCAGTGCCTGCTGCGGCGGTGGAGGCTAGTCATGATAACGCCCTGCGGCTGGTCATGTGCAATGGAAAGATTATTCGGGAGAGGATGCCCATCACTAATGTGGCAGCAACAGTCAACGCCGTGGAGATGTACCATAAACACAGGATAAAGCTGGAAAGAATCCCAATGTGTCCAGAagaaaaagttaaaaaagaaaaatgtgagGATGAATTTGGTGTACAATGCACTATAAAGAAACCAGTCAGTCAAGGTGAAAGTGTGCAGACAGAACTCAGGACAGAGTCGCCACATTTAGCATCTTCAGACAGCGACTCAAAGGCGGGTGATTCTGCTGAGAAGTGTTCATTGGAGTCTGAGAGTTCAGATGGAGAGGACGGAGGAAGCCAGAGAGACTCAGGGACTTTTGTGGAGCATCTAAACAGCCACCGGCATAGCCACCATAAGCAAGCATTAAAACGTGAACGTCCTACCTCACCCAACACTGACTGTGCCATTCAGGGCATGCTGTCGATGGCAGGTCTGCTGTGTCCGCAGGCGTCAGGAGGAGCGGCTGATATTTTACAGCAGCGCTGGTGGGCCAGTCAGGGTAACGGCAGCAGCACCAGCAGCAGCAGTGACATGTGGGACAGCAGTGAACCCTGTTCAGCCCCCCGCAGCCCAGATGCAGAGGACGGCAGTCTGGGAGAGGAGTATTCATACAGAGAGAGCTCGCTTTCTCCTCCACTGCACCCCTCCAAACGACACGCGCCAAACCCCACACCCGTCAGCAACCAGGCCACTAAAGGAAAGCGTCCTAAGAAAGGACAGGCGACGGCTAAACAGAGGCTTGGAAAGATCTTGAAAATGAGCCGTCATAAAGGCTTATTCCTGTAGCATGATGGAGAAAAAACAAGACACGGCTGCTTTTCTTGATGCGCTGGGATTATTTCACACTCACTCACTGTGCATGTTTAGGCAACAGGGTATGATCACTTTCTTCACCAATCAATCACCAAAAAAACACATCAATTAGTGCAAGAAAACAGCTTTACTTTAGCCAACATCACAACATGAACAGCCAAGAGTCTCCAAAGGAAGCACAGAAGTGGACGggaaagagtgtgtatgtgcgtgcttgtgtgtccCGAATTGAGGCCTCTTCTGTCCCTCATCTTTACCTCGATTGACGTGTGTAGCATGAAGCCGATGGTCTTCCTCATCCCTCAACAGGGCGGCACTCCATTGGACCCTCAGTTCCTCCTCCAGTCGTCTTCAATCTGTGTTTTTCCTCCTCCTCTGATCGTCTCAGGCTGATGTGTGAGCTTTTTATAAATGGTGCTGAACATTTATATGTCCTTCTCTCAAACCCTTGTGTTCCTCTTTAAGCAATAATTGTACAGCGGTGAGTGGTGTTGAGGATTTTACTGGGCCGCACTTTTAGGATGCAGGAAAAAATAAGTCCTCT
>TCONS_00055765
ATGGCGGCTGCCCCGCTATACTGTGTCTGCCGGCAGCCTTATGATGTTAACCGGTTTATGATCGAATGCGACATCTGTAAAGACTGGTTTCACGGCAGTTGTGTTCAGGTAGTGGAGCACCATGCTGCTGATATCGATGTTTATCACTGTCCAAACTGTGAGCCCATCCATGGACCCTACATGATGAAAAAGCATAACAACTGGCACAGGCATGACTACACGGAGCCAAATGATGGCACACGGCCCGTGCAGGCAGGAACTGCTGTGTTTGTGAAGGAACTCCAGGCCAGGAGCTTTGCCAGCGGTGATATTCTGGTGCAGATGCAGGGGAATCAGGTGACCAAACGCTTCTTGGAGAAAGAGGGCTTCAATTACCCTATAGTGGTGCATGACCTGGATGGACTGGGGCTGAAACTGCCCCCTCCATCATTCTCTGTCAGTGATGTGGAGCATTACGTTGGTGCAAATAAAGTCATCGACGTGATTGATGTGGCGAAACAGGCAGACAGTAAGATGAAGCTGGGAGAGTTTGTCAAATATTACTACCAACCTGAACGGCCCAAAGTGTTGAATGTTATCAGCCTGGAGTTCTCTGATACAAGgaTGTCAAATCTGGTGGTGGTTCCTGATATCGCTCAAAAGATGTCCTGGGTTGAAAACTACTGGCCCGATGACTCGTTCTTCCCCAAACCGTTCGTGCAGAAGTATTGTCTTATGGGAATGAAAAACAGCTACACAGATTTCCACATCGACTTTGGAGGAACTTCAGTGTGGTATCATGTACTTTGGggagagaagattttctactTGATCAAGCCAACGAAAGCTAACCTTGCACTATATGAGGCCTGGAGCTCATCGCCTAATCAAAGCGAAGTTTTCTTTGGGGAAAAAGTCGACAAGTGTTACAAATGCGTGGTGAAGCAGGGAACTACCATCTTACTGCCTACTGGCTGGATTCATGCTGTTCTCACTTCTCAGGACTCGATGGCGTTTGGAGGAAACTTCTTGCATAACTTAAACATAGACATGCAGCTCAGGTGTTATGAGATGGAGCGCAGACTGAAGACTCCAGATCTCTTTAAGTTCCCATATTTTGAGGCCATCTGCTGGTATGTGGCCAAAAACCTGCTGGAGACTCTTAAAGaacTGCGTGAGAATAAATGTGAAGCTCAGGGTTTTCTGGTGAACGGAGTGAAAGCTTTAATCTCATCACTGAAGATGTGGTTGAGGAGGGAGCTCACTCAGCCTAACAGCGAAGTGCCAGACAACATCAGACCAGGACACCTCATTAAAGCTCTGAGCAAAGAGATCCGACACCTCGAGGACGATTCCAATAAAGCTGTGAAAACTCAGGGAAGTGCTGAATGTTCTTTATCCCGCTCGACACTGGAGAAAGGAGATCAAGCCCAACAGGCTGCTCGGCGACTGCaagatcatcatcatcacagaCGCCgccaccaccatcaccaccatcatcatcatcatcaccaccaccatcatcacAGCCGAAAACTGCCCTCAAACCTGGACGTGCTGGAGCTCCACACACTGGAGGTGTTGAAGAGACTGGAGGTTGGCCAGCTGAAGGAGGACTCGGCCTTCAGCTCCAAAGTCAATGGCAAGTTCAAGAAAGTGTGTCCAGTGCCTGCTGCGGCGGTGGAGGCTAGTCATGATAACGCCCTGCGGCTGGTCATGTGCAATGGAAAGATTATTCGGGAGAGGATGCCCATCACTAATGTGGCAGCAACAGTCAACGCCGTGGAGATGTACCATAAACACAGGATAAAGCTGGAAAGAATCCCAATGTGTCCAGAagaaaaagttaaaaaagaaaaatgtgagGATGAATTTGGTGTACAATGCACTATAAAGAAACCAGTCAGTCAAGGTGAAAGTGTGCAGACAGAACTCAGGACAGAGTCGCCACATTTAGCATCTTCAGACAGCGACTCAAAGGCGGGTGATTCTGCTGAGAAGTGTTCATTGGAGTCTGAGAGTTCAGATGGAGAGGACGGAGGAAGCCAGAGAGACTCAGGGACTTTTGTGGAGCATCTAAACAGCCACCGGCATAGCCACCATAAGCAAGCATTAAAACGTGAACGTCCTACCTCACCCAACACTGACTGTGCCATTCAGGGCATGCTGTCGATGGCAGGTCTGCTGTGTCCGCAGGCGTCAGGAGGAGCGGCTGATATTTTACAGCAGCGCTGGTGGGCCAGTCAGGGTAACGGCAGCAGCACCAGCAGCAGCAGTGACATGTGGGACAGCAGTGAACCCTGTTCAGCCCCCCGCAGCCCAGATGCAGAGGACGGCAGTCTGGGAGAGGAGTATTCATACAGAGAGAGCTCGCTTTCTCCTCCACTGCACCCCTCCAAACGACACGCGCCAAACCCCACACCCGTCAGCAACCAGGCCACTAAAGGAAAGCGTCCTAAGAAAGGACAGGCGACGGCTAAACAGAGGCTTGGAAAGATCTTGAAAATGAGCCGTCATAAAGGCTTATTCCTCATGAAGCCGATGGTCTTCCTCATCCCTCAACAGGGCGGCACTCCATTGGACCCTCAGTTCCTCCTCCAGTCGTCTTCAATCTGTGTTTTTCCTCCTCCTCTGATCGTCTCAGGCTGA
>TCONS_00055766
ATTAGGAAGATGGCGGCTGCCCCGCTATACTGTGTCTGCCGGCAGCCTTATGATGTTAACCGGTTTATGATCGAATGCGACATCTGTAAAGACTGGTTTCACGGCAGTTGTGTTCAGGTAGTGGAGCACCATGCTGCTGATATCGATGTTTATCACTGTCCAAACTGTGAGCCCATCCATGGACCCTACATGATGAAAAAGCATAACAACTGGCACAGGCATGACTACACGGAGCCAAATGATGGCACACGGCCCGTGCAGGCAGGAACTGCTGTGTTTGTGAAGGAACTCCAGGCCAGGAGCTTTGCCAGCGGTGATATTCTGGTGCAGATGCAGGGGAATCAGGTGACCAAACGCTTCTTGGAGAAAGAGGGCTTCAATTACCCTATAGTGGTGCATGACCTGGATGGACTGGGGCTGAAACTGCCCCCTCCATCATTCTCTGTCAGTGATGTGGAGCATTACGTTGGTGCAAATAAAGTCATCGACGTGATTGATGTGGCGAAACAGGCAGACAGTAAGATGAAGCTGGGAGAGTTTGTCAAATATTACTACCAACCTGAACGGCCCAAAGTGTTGAATGTTATCAGCCTGGAGTTCTCTGATACAAGgaTGTCAAATCTGGTGGTGGTTCCTGATATCGCTCAAAAGATGTCCTGGGTTGAAAACTACTGGCCCGATGACTCGTTCTTCCCCAAACCGTTCGTGCAGAAGTATTGTCTTATGGGAATGAAAAACAGCTACACAGATTTCCACATCGACTTTGGAGGAACTTCAGTGTGGTATCATGTACTTTGGggagagaagattttctactTGATCAAGCCAACGAAAGCTAACCTTGCACTATATGAGGCCTGGAGCTCATCGCCTAATCAAAGCGAAGTTTTCTTTGGGGAAAAAGTCGACAAGTGTTACAAATGCGTGGTGAAGCAGGGAACTACCATCTTACTGCCTACTGGCTGGATTCATGCTGTTCTCACTTCTCAGGACTCGATGGCGTTTGGAGGAAACTTCTTGCATAACTTAAACATAGACATGCAGCTCAGGTGTTATGAGATGGAGCGCAGACTGAAGACTCCAGATCTCTTTAAGTTCCCATATTTTGAGGCCATCTGCTGGTATGTGGCCAAAAACCTGCTGGAGACTCTTAAAGaacTGCGTGAGAATAAATGTGAAGCTCAGGGTTTTCTGGTGAACGGAGTGAAAGCTTTAATCTCATCACTGAAGATGTGGTTGAGGAGGGAGCTCACTCAGCCTAACAGCGAAGTGCCAGACAACATCAGACCAGGACACCTCATTAAAGCTCTGAGCAAAGAGATCCGACACCTCGAGGACGATTCCAATAAAGCTGTGAAAACTCAGGGAAGTGCTGAATGTTCTTTATCCCGCTCGACACTGGAGAAAGGAGATCAAGCCCAACAGGCTGCTCGGCGACTGCaagatcatcatcatcacagaCGCCgccaccaccatcaccaccatcatcatcatcatcaccaccaccatcatcacAGCCGAAAACTGCCCTCAAACCTGGACGTGCTGGAGCTCCACACACTGGAGGTGTTGAAGAGACTGGAGGTTGGCCAGCTGAAGGAGGACTCGGCCTTCAGCTCCAAAGTCAATGGCAAGTTCAAGAAAGTGTGTCCAGTGCCTGCTGCGGCGGTGGAGGCTAGTCATGATAACGCCCTGCGGCTGGTCATGTGCAATGGAAAGATTATTCGGGAGAGGATGCCCATCACTAATGTGGCAGCAACAGTCAACGCCGTGGAGATGTACCATAAACACAGGATAAAGCTGGAAAGAATCCCAATGTGTCCAGAagaaaaagttaaaaaagaaaaa
>TCONS_00055767
ATTAGGAAGATGGCGGCTGCCCCGCTATACTGTGTCTGCCGGCAGCCTTATGATGTTAACCGGTTTATGATCGAATGCGACATCTGTAAAGACTGGTTTCACGGCAGTTGTGTTCAGGTAGTGGAGCACCATGCTGCTGATATCGATGTTTATCACTGTCCAAACTGTGAGCCCATCCATGGACCCTACATGATGAAAAAGCATAACAACTGGCACAGGCATGACTACACGGAGCCAAATGATGGCACACGGCCCGTGCAGGCAGGAACTGCTGTGTTTGTGAAGGAACTCCAGGCCAGGAGCTTTGCCAGCGGTGATATTCTGGTGCAGATGCAGGGGAATCAGGTGACCAAACGCTTCTTGGAGAAAGAGGGCTTCAATTACCCTATAGTGGTGCATGACCTGGATGGACTGGGGCTGAAACTGCCCCCTCCATCATTCTCTGTCAGTGATGTGGAGCATTACGTTGGTAAGAttttagagtgtgtgtttgtgtgcattgaaTTTACTGTCTACCTGATGACTCCCAGGAGAGTATTTGGGCTTTTGGGACACTACAGTGATATTAGTATTTAAATCAATAACACATTGGAACTTGTACAAAATGGTTTGCCTGTATATGGTTTTCTGGCCTCAAAAAGTGtaatgctgctttatttttaccatttattaatatttgtattgcaTATTTGCTTTATTCTGTGCTAAAATAATGGCCTATCATATGTTTTTGCTGTGGTTTACTGGAGAAGTACTGCAATGGCATTCAGTGtaacaatgttgtttttttattttaattaattttcattttattaattataaagtgTTTAAAATGTAACAA

Function

symbol description
kdm7aa Enables histone demethylase activity (H3-K27 specific) and histone demethylase activity (H3-K9 specific). Involved in midbrain development. Acts upstream of or within histone H3-K27 demethylation and histone H3-K9 demethylation. Predicted to be located in nucleus. Is expressed in several structures, including anterior axial hypoblast; immature eye; margin; mesoderm; and nervous system. Human ortholog(s) of this gene implicated in melanoma. Orthologous to human KDM7A (lysine demethylase 7A).

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0071557 histone H3-K27 demethylation biological_process
GO:0033169 histone H3-K9 demethylation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0007399 nervous system development biological_process
GO:0030901 midbrain development biological_process
GO:0005634 nucleus cellular_component
GO:0071558 histone demethylase activity (H3-K27 specific) molecular_function
GO:0046872 metal ion binding molecular_function
GO:0035575 histone demethylase activity (H4-K20 specific) molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051213 dioxygenase activity molecular_function
GO:0032454 histone demethylase activity (H3-K9 specific) molecular_function
GO:0051864 histone demethylase activity (H3-K36 specific) molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9829 Enables histone demethylase activity (H3-K27 specific) and histone demethylase activity (H3-K9 specific). Involved in midbrain development. Acts upstream of or within histone H3-K27 demethylation and histone H3-K9 demethylation. Predicted to be located in nucleus. Is expressed in several structures, including anterior axial hypoblast; immature eye; margin; mesoderm; and nervous system. Human ortholog(s) of this gene implicated in melanoma. Orthologous to human KDM7A (lysine demethylase 7A).

Ensembl:

ensembl_id ENSDARG00000018111

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055764 False 3094 mRNA 0.49 18 22484830 22519525
TCONS_00055765 False 2628 mRNA 0.50 19 22484981 22519516
TCONS_00055766 False 1848 mRNA 0.48 14 22492355 22519525
TCONS_00055767 True 841 mRNA 0.42 4 22505617 22519525

Neighbor

gene id symbol gene type direction distance location
XLOC_028772 kmt2e coding downstream 12177 22424451 ~ 22472653 (-)
XLOC_028771 orc5 coding downstream 121121 22353465 ~ 22363709 (-)
XLOC_028770 golgb1 coding downstream 145924 22312856 ~ 22338906 (-)
XLOC_028769 hcls1 coding downstream 173220 22300330 ~ 22311610 (-)
XLOC_028768 NA coding downstream 193077 22282725 ~ 22291753 (-)
XLOC_028774 cd36 coding upstream 138947 22658472 ~ 22671469 (-)
XLOC_028775 nup107 coding upstream 211270 22730795 ~ 22749553 (-)
XLOC_028776 magi2a coding upstream 235940 22755465 ~ 23083187 (-)
XLOC_028777 NA coding upstream 599894 23119419 ~ 23125640 (-)
XLOC_028778 NA coding upstream 640490 23160015 ~ 23210241 (-)
XLOC_028767 BX537162.1 non-coding downstream 247536 22236358 ~ 22237294 (-)
XLOC_028764 BX569790.2 non-coding downstream 827724 21656245 ~ 21657106 (-)
XLOC_028762 NA non-coding downstream 836838 21634012 ~ 21647992 (-)
XLOC_028761 NA non-coding downstream 855832 21592244 ~ 21628998 (-)
XLOC_028779 AL929141.1 non-coding upstream 707208 23226733 ~ 23226849 (-)
XLOC_028780 CR394543.1 non-coding upstream 899795 23419320 ~ 23419455 (-)
XLOC_028782 AL929006.1 non-coding upstream 932292 23451817 ~ 23451931 (-)

Expression


Co-expression Network