G980019


Basic Information

Item Value
gene id G980019
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 42631824 ~ 42636709 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1115850
AGCAATAACAATAGTACTTTAATAAAGAGCTTAATCCGTTACAGGGAATGAAGGATGAATCTCCAAACAACTCAACTACGACTCAACAGGACTCAGATCAACATAATATTGGCAGAGCTACCCATGCTCTTACCCCAAATAGTCTTCTCCCATGCAGGGAAAGCTACAGTAACCTCTAACCCTGTAAGGCTGTTCACTTCTTTATAGTGGCTGGTACGGGTCAGGAGTCTTTCAAATAAGCAACAACTCACTGCAGTATCACCTACTGGGGCTTCCAGTAGCAGTTCTACCGTTGTGAGAAACCATGCTGCTTAGCATTCGATTGCAGAGCAATTGAAAGGGCAACAAACTGAGGTGCGTGTCAGTTGAACATGCACCAGCACaggcacgtacgcacacacactcaccaaaGGTCTATCTTTCTGTTTGGCAGTGGAAGCATCTATTGAGCCCGGATGGGTGTTTGGTCACATAGTGTCCTGAGCTGGGGGCACAGGACAGAGATGGAAGAGGGGGCGTGGGGGGGTAACCAGGAGTAAGACTAGCTCACCTCTGGGTGCTCAAGAACATCCTAAAATTAGCCGTGGCCACACAAACTATTTCCTGAGTGCGGAACTTCAATAAAGAGATGGGCTTATACTGTagggtgtgattgtgtgtgttagagggagCTAGCGATCACACCTGATATGTGAGGATGATGTGTGTTTGTCAGAGGAGCAGAGACTAATAGCCCAGTGTTCCTTCCTGACCTCTTCTTGTGGAGGGGAGTACCACTGGCTGGGTGCGCATGTCGTCATTTATGGGGCTGTGAGGAGTGATGTACAGGAGTTTAGATGGAGGAGGTTCAGACAGTGGAGGGACTCCCAGACTAATAAATGATCCCGTCAGAGGATTCACACAGGGGCCTCAAGGGCCCTCCCGGGTGGTATGCACTTCAGACCAGCCTTTTGTGTAGCTGGCTATGTATTTGTCTTCGTGAAGCTCAATGCCATTTTGGCAATGAATGAAAAATCTACAAAGATGATACAAAATATTTAATCTTTTACAAGTTTTTCCAAAATAATCGACATACATCTGGTGAATTTATTGGTCGTATTAGATGCACATTATTTTCTCATAACTTTCCCTTTACTGCCCCCACCCAACCCAAATCCCCGTCCTTGTCCTCGACAACCATTGGCCAGGACTAGGAGAGTGAAGATGATGTCACAGGCAACACAGCAGGCGAAAATACCTCGGAGAGCAATGACAAGCATACAGCGATACAAGATCATCAACCGACATTAGACCATTTACAAGCATATTATGTACATCATTCCAAAAAaagttgagtaaaaaaaaaaagggggggggggggggcaaatgaaAGTGCCGTTTTCCTTTATGCCCGTCCGATACATTCTGTTGAGCTTTTCTTTTCAGTCACGTCAAATAAATCACTTTGGTTTGCTTGCATACATAGCCAAAACAATGTTATAAAACTTAGAATATTTGGATACAAGACCACACACAATATACCACCCACCACAGTTACTGTAAATTATACCACGTACAGTAGTTCACGCATACATATTCAGGTTTTCAAACTGTCCCCTTTAGGCAATAGAAATAGACACGAGTCTGCATTTTAGAGAGGATGATATAACCCGTGTAGGTCCTACATTCCACGCAGCATGTTATTGTATTTCAAGTGCATCTCTCAAACAAACCAAACCAATGGCCTTCCAAAGTGGCAGATCTACACTTGTTGAAGTGTaaaggacggagggagggagaggggtatgTGGAGGAGTGGAAGGCCCCTTCAGATGTAGCCTACGCTGTGATCTTTCAACAGATGCTTTCGGGAGACACCCAGGAGACGTTCCCTTCAGACAGGGCCACGTTCCTAACCGCtgacgagggagagagggagagtgagagggataaTGGGATAGCTTTGGAAAGAGGGTGCGCGCGCGCATACGCGCAAAGCCCTGCTGTCTCTGGCCACCCGTCGTCGTGTCTTGTCACACAGCGGCTAACTGGCTGCTCGTCTAACGGTCGACCTCTCCAACAAAACGCAGCATCTGGCCCTACAAGTTCACAGTCCCATCCACATCACTCTCCAGAGCCAGAAGAGACAAGACGACTCCAGAAACATGCACCCATGCACATTTACATGTGCACACATGTAGCATACACACccagcatgcacgcacacacgcacacacacacacacagcttgctTGTTTGCTTTGCATAAACACCCCCACTGGGCagagacgtcagttcaacgtctaccTTTGATTTACCTTTGGTTCAATTGTCAACTAACCTGAAATCAACCAAACATTTCATCtggtcattggatttaggttgaaAATTCCCTGACGTGGATCGACTTTGTGCAAAGCCATCAGTTTTCCCACGTCGCGTAGCATTGTTTGGGCTGAACTGACCTGGAAGCTACGTTAATTCAGCGTCATCGCGTAGCATTGTTTGGGCTGAACTGACGTGGAAGCAACGTTGATTAGGTGTCGTCGCGTAGCATTGTTTGGGCTGAACTGACGCGGAAGCAACGTTGATTAGGCGTCGTCGCGTAGCATTGTTTGGGCTGAACTGACGCGGAAGCAACGTTGATTAGGCGTCGTCGCGTAGCATTGTTTGGGCTGAACTGACGCGGAAGCAACGTTGATTAGGCGTCGTCGCGTAGCATTGTTTGGGCTGAACTGACGTGGAAGCAACGTTGATTAGGCGTCGTCGCGTAGCATTGTTTGGGCTGAACTGACGTGGAAGCAACGTTGATTAGGCGTCGTCGCGTAGCATTGTTTGGGCTGAACTGACGTGGAAGCAACGTTGATTCAGCGTCGTCGCGTAGCATTGTTTGGGCTGAACTGACGCGGAAGCAACGTTGATTAGGCGTCGTCGCGTAGCATTGTTTGGGCTGAACTGACGTGGAAGCAACGTTGATTCAGCGTCGTCGCGTAGCATTGTTTGGGCTGAACTGACGCGGAAGCAACGTTGATTAGGCGTCGTCGCGTAGCATTGTTTGGGCTGAACTGACGTGGAAGCAACGTTGATTAGGCGTCGTCGCGTAGCATTGTTTGCGCTGAACTGACGTGGAAGCAACGTTGATTCAAactgtttttgcccagtgggacacatgcacacacatacacgtattCACAAACTCGTCCCTTGAAAGAGAGATCATAGTTGAGCAGGAGGTGGGGCAGATGGAGATGGCGGCCAGCCTGTGGCACAGtgttggagagtgtgtgtgtgcccactgAGGCAACAtgtggagatgagaggagaggagaccagcctttcaaataaGATTACCGCTTGGGCTGCCTAAGGCCTGCCTGGCGATTCTGTCTGCACAGGGTGACATCTATATTAGCTCAGTGGCACAGCAGAGATCTACACTTGCCTGCCTCTTCTGGGGGGAAACGACACCCTGTTTCTGGGTAGAAAAACACTGATCTGCGCTATTGATGGTTGTGAAGACCGGAAGAATGGCATATCGGCAGGACTGCAGCAGTCCCCGGGTTCCATTTAAAAGAGGATTTTTGAGGTTTTGAAGTTATCATTCATTTGGATAGTCAAGGACCACTGGAACAGGGTGATATGTATATAGGCCTAAGAACTGAAGAGACAATTAACATTTGACCTcttaaaatacccccccccccccccccccccccctcaaaataTAATAATTGAATCCAAAATGTaaatacaacaaaaaatatttacaacattttgtaaaataatgaataaatacGCTCTTTATCTATTGTTCCACATGCTTACACCCAGAGGTAATTTGGGAGTTCAGATTTGGAAAAGTAGACCATCCATTCTACCTGGTTGGCGGCTTTCTGACTATGATAGGGTTAAATGATATGTTCCTTACGGGGGAATTCATAACTGTCACACAGTTGAGCATGACTTGTACATCTGTCAGACTGGTACAATGCTGTAAACACCTGGGTCTGGAATGGTCCGGTCCACTTTCATCCAGGCTCATCTCTAAACTCAGAATTTACGATTTTTCTCTTGCTGTCTCTTTCTACAGTGATAATTACACTTCGGGAGCctgtacatgtatatataaaGTCAgtagaagagggagaaagaggaaaagatgaaaaaaggagagagagagagagttgaggaggTCCAGACCAGCCTTCCTCTGCTCCTCGGTGTCGGGCCGTTGAGGGAGGGAAGATTCCGTGGGCGGACAAAGCCAGCTACCCCGggttgtttttctttcttttatttGGACTATGACTGAGATCCAGTTTCAGCTCTCG
>TU1115839
acacacacacacacacacacacacacacagcttgctTGTTTGCTTTGCATAAACACCCCCACTGGGCagagacgtcagttcaacgtctaccTTTGATTTACCTTTGGTTCAATTGTCAACTAACCTGAAATCAACCAAACATTTCATCtggtcattggatttaggttgaaAATTCCCTGACGTGGATCGACTTTGTGCAAAGCCATCAGTTTTCCCACGTCGCGTAGCATTGTTTGGGCTGAACTGACCTGGAAGCTACGTTAATTCAGCGTCATCGCGTAGCATTGTTTGGGCTGAACTGACGTGGAAGCAACGTTGATTAGGTGTCGTCGCGTAGCATTGTTTGGGCTGAACTGACGCGGAAGCAACGTTGATTAGGCGTCGTCGCGTAGCATTGTTTGGGCTGAACTGACGCGGAAGCAACGTTGATTAGGCGTCGTCGCGTAGCATTGTTTGGGCTGAACTGACGCGGAAGCAACGTTGATTAGGCGTCGTCGCGTAGCATTGTTTGGGCTGAACTGACGTGGAAGCAACGTTGATTAGGCGTCGTCGCGTAGCATTGTTTGGGCTGAACTGACGTGGAAGCAACGTTGATTAGGCGTCGTCGCGTAGCATTGTTTGGGCTGAACTGACGTGGAAGCAACGTTGATTCAGCGTCGTCGCGTAGCATTGTTTGGGCTGAACTGACGCGGAAGCAACGTTGATTAGGCGTCGTCGCGTAGCATTGTTTGGGCTGAACTGACGTGGAAGCAACGTTGATTCAGCGTCGTCGCGTAGCATTGTTTGGGCTGAACTGACGCGGAAGCAACGTTGATTAGGCGTCGTCGCGTAGCATTGTTTGGGCTGAACTGACGTGGAAGCAACGTTGATTAGGCGTCGTCGCGTAGCATTGTTTGCGCTGAACTGACGTGGAAGCAACGTTGATTCAAactgtttttgcccagtgggacacatgcacacacatacacgtattCACAAACTCGTCCCTTGAAAGAGAGATCATAGTTGAGCAGGAGGTGGGGCAGATGGAGATGGCGGCCAGCCTGTGGCACAGtgttggagagtgtgtgtgtgcccactgAGGCAACAtgtggagatgagaggagaggagaccagcctttcaaataaGATTACCGCTTGGGCTGCCTAAGGCCTGCCTGGCGATTCTGTCTGCACAGGGTGACATCTATATTAGCTCAGTGGCACAGCAGAGATCTACACTTGCCTGCCTCTTCTGGGGGGAAACGACACCCTGTTTCTGGGTAGAAAAACACTGATCTGCGCTATTGATGGTTGTGAAGACCGGAAGAATGGCATATCGGCAGGACTGCAGCAGTCCCCGGGTTCCATTTAAAAGAGGATTTTTGAGGTTTTGAAGTTATCATTCATTTGGATAGTCAAGGACCACTGGAACAGGGTGATATGTATATAGGCCTAAGAACTGAAGAGACAATTAACATTTGACCTcttaaaatacccccccccccccccccccccccctcaaaataTAATAATTGAATCCAAAATGTaaatacaacaaaaaatatttacaacattttgtaaaataatgaataaatacGCTCTTTATCTATTGTTCCACATGCTTACACCCAGAGGTAATTTGGGAGTTCAGATTTGGAAAAGTAGACCATCCATTCTACCTGGTTGGCGGCTTTCTGACTATGATAGGGTTAAATGATATGTTCCTTACGGGGGAATTCATAACTGTCACACAGTTGAGCATGACTTGTACATCTGTCAGACTGGTACAATGCTGTAAACACCTGGGTCTGGAATGGTCCGGTCCACTTTCATCCAGGCTCATCTCTAAACTCAGAATTTACGATTTTTCTCTTGCTGTCTCTTTCTACAGTGATAATTACACTTCGGGAGCctgtacatgtatatataaaGTCAgtagaagagggagaaagaggaaaagatgaaaaaaggagagagagagagagttgaggaggTCCAGACCAGCCTTCCTCTGCTCCTCGGTGTCGGGCCGTTGAGGGAGGGAAGATTCCGTGGGCGGACAAAGCCAGCTACCCCGggttgtttttctttcttttatttGGACTATGACTGAGATCCAGTTTCAGCTCTCG
>TU1115842
acacacacacacacacacacacacacacagcttgctTGTTTGCTTTGCATAAACACCCCCACTGGGCagagacgtcagttcaacgtctaccTTTGATTTACCTTTGGTTCAATTGTCAACTAACCTGAAATCAACCAAACATTTCATCtggtcattggatttaggttgaaAATTCCCTGACGTGGATCGACTTTGTGCAAAGCCATCAGTTTTCCCACGTCGCGTAGCATTGTTTGGGCTGAACTGACCTGGAAGCTACGTTAATTCAGCGTCATCGCGTAGCATTGTTTGGGCTGAACTGACGTGGAAGCAACGTTGATTAGGTGTCGTCGCGTAGCATTGTTTGGGCTGAACTGACGTGGAAGAAACGTTGATTAGGCGTCGTCGCGTAGCATTGTTTGGGCTGAACTGACGTGGAAGCAACGTTGATTAGGCGTCGTCGCGTAGCATTGTGTGGGCTGAACTGACGTGGAAGCAACGTTGATTAGGTGTCGTCGCGTAGCATTGTTTGGGCTGAACTGACGCGGAAGCAACGTTGATTAGGCGTCGTCGCGTAGCATTGTTTGGGCTGAACTGACGCGGAAGCAACGTTGATTAGGCGTCGTCGCGTAGCATTGTTTGGGCTGAACTGACGCGGAAGCAACGTTGATTAGGCGTCGTCGCGTAGCATTGTTTGGGCTGAACTGACGTGGAAGCAACGTTGATTAGGCGTCGTCGCGTAGCATTGTTTGGGCTGAACTGACGTGGAAGCAACGTTGATTAGGCGTCGTCGCGTAGCATTGTTTGGGCTGAACTGACGTGGAAGCAACGTTGATTCAGCGTCGTCGCGTAGCATTGTTTGGGCTGAACTGACGCGGAAGCAACGTTGATTAGGCGTCGTCGCGTAGCATTGTTTGGGCTGAACTGACGTGGAAGCAACGTTGATTCAGCGTCGTCGCGTAGCATTGTTTGGGCTGAACTGACGCGGAAGCAACGTTGATTAGGCGTCGTCGCGTAGCATTGTTTGGGCTGAACTGACGTGGAAGCAACGTTGATTAGGCGTCGTCGCGTAGCATTGTTTGCGCTGAACTGACGTGGAAGCAACGTTGATTCAAactgtttttgcccagtgggacacatgcacacacatacacgtattCACAAACTCGTCCCTTGAAAGAGAGATCATAGTTGAGCAGGAGGTGGGGCAGATGGAGATGGCGGCCAGCCTGTGGCACAGtgttggagagtgtgtgtgtgcccactgAGGCAACAtgtggagatgagaggagaggagaccagcctttcaaataaGATTACCGCTTGGGCTGCCTAAGGCCTGCCTGGCGATTCTGTCTGCACAGGGTGACATCTATATTAGCTCAGTGGCACAGCAGAGATCTACACTTGCCTGCCTCTTCTGGGGGGAAACGACACCCTGTTTCTGGGTAGAAAAACACTGATCTGCGCTATTGATGGTTGTGAAGACCGGAAGAATGGCATATCGGCAGGACTGCAGCAGTCCCCGGGTTCCATTTAAAAGAGGATTTTTGAGGTTTTGAAGTTATCATTCATTTGGATAGTCAAGGACCACTGGAACAGGGTGATATGTATATAGGCCTAAGAACTGAAGAGACAATTAACATTTGACCTcttaaaatacccccccccccccccccccccccctcaaaataTAATAATTGAATCCAAAATGTaaatacaacaaaaaatatttacaacattttgtaaaataatgaataaatacGCTCTTTATCTATTGTTCCACATGCTTACACCCAGAGGTAATTTGGGAGTTCAGATTTGGAAAAGTAGACCATCCATTCTACCTGGTTGGCGGCTTTCTGACTATGATAGGGTTAAATGATATGTTCCTTACGGGGGAATTCATAACTGTCACACAGTTGAGCATGACTTGTACATCTGTCAGACTGGTACAATGCTGTAAACACCTGGGTCTGGAATGGTCCGGTCCACTTTCATCCAGGCTCATCTCTAAACTCAGAATTTACGATTTTTCTCTTGCTGTCTCTTTCTACAGTGATAATTACACTTCGGGAGCctgtacatgtatatataaaGTCAgtagaagagggagaaagaggaaaagatgaaaaaaggagagagagagagagttgaggaggTCCAGACCAGCCTTCCTCTGCTCCTCGGTGTCGGGCCGTTGAGGGAGGGAAGATTCCGTGGGCGGACAAAGCCAGCTACCCCGggttgtttttctttcttttatttGGACTATGACTGAGATCCAGTTTCAGCTCTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1115850 False 4310 TUCP 0.47 3 42631824 42636709
TU1115839 False 2114 lncRNA 0.48 2 42634156 42636709
TU1115842 True 2279 lncRNA 0.48 2 42634156 42636709

Neighbor

gene id symbol gene type direction distance location
slf1 slf1 coding upstream 4425 42592008 ~ 42629731 (+)
LOC110535709 LOC106580150 coding upstream 477130 42146000 ~ 42157026 (+)
LOC118937354 NA coding upstream 873303 41715130 ~ 41760853 (+)
LOC118937445 NA coding upstream 934906 41669796 ~ 41699250 (+)
LOC118937352 NA coding upstream 1002115 41626277 ~ 41632041 (+)
fam81b fam81b coding downstream 202839 42839548 ~ 42861443 (+)
LOC110535025 LOC106580143 coding downstream 520923 43157632 ~ 43208004 (+)
LOC110535720 NA coding downstream 1393829 44030538 ~ 44054846 (+)
LOC110535722 LOC106580138 coding downstream 1482772 44119481 ~ 44178070 (+)
LOC110535730 LOC106580238 coding downstream 2217793 44854502 ~ 44865316 (+)
G979987 NA non-coding upstream 64802 42569102 ~ 42569354 (+)
G979985 NA non-coding upstream 67694 42566245 ~ 42566462 (+)
G979984 NA non-coding upstream 67914 42565817 ~ 42566242 (+)
G979707 NA non-coding upstream 509741 42123583 ~ 42124415 (+)
G979706 NA non-coding upstream 511464 42122493 ~ 42122692 (+)
G980072 NA non-coding downstream 66859 42703568 ~ 42703849 (+)
G980171 NA non-coding downstream 229426 42866135 ~ 42866460 (+)
G980175 NA non-coding downstream 234088 42870797 ~ 42871073 (+)
G980191 NA non-coding downstream 251579 42888288 ~ 42888488 (+)
G980194 NA non-coding downstream 252515 42889224 ~ 42889433 (+)
G979965 NA other upstream 100848 42528520 ~ 42533308 (+)
G979689 NA other upstream 555301 42078492 ~ 42078855 (+)
G978396 NA other upstream 1618068 41003076 ~ 41016088 (+)
G978255 NA other upstream 1865927 40767836 ~ 40768229 (+)
G976017 NA other upstream 3576145 39057676 ~ 39058011 (+)
G981690 NA other downstream 1023665 43660374 ~ 43715297 (+)
G982236 LOC106580137 other downstream 1644216 44280925 ~ 44285969 (+)
LOC110535735 fibcd1 other downstream 2746698 45189846 ~ 45413082 (+)
G984422 pesc other downstream 3471211 46107920 ~ 46109940 (+)
G985257 NA other downstream 3970683 46607392 ~ 46607681 (+)

Expression


Co-expression Network