G980072


Basic Information

Item Value
gene id G980072
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 42703568 ~ 42703849 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1115906
ACACACTACAGAGCACCATCACTGGGCTTGGCAGAGGGGTGAAGTAGAGGAAACCATGTTAACATCTGAACACTGGTGGATCAAGACTTAAGGCTAAAGAAAATACATACACAGAATGGAATATATGCACAGATACACAACCAAGATACAGATACACTATCACCATACATatacactatcaacatacagGTACACTATCAAGATACAGATACACTATCACCATACATatacactatcaacatac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1115906 True 244 lncRNA 0.39 2 42703568 42703849

Neighbor

gene id symbol gene type direction distance location
slf1 slf1 coding upstream 73837 42592008 ~ 42629731 (+)
LOC110535709 LOC106580150 coding upstream 546542 42146000 ~ 42157026 (+)
LOC118937354 NA coding upstream 942715 41715130 ~ 41760853 (+)
LOC118937445 NA coding upstream 1004318 41669796 ~ 41699250 (+)
LOC118937352 NA coding upstream 1071527 41626277 ~ 41632041 (+)
fam81b fam81b coding downstream 135699 42839548 ~ 42861443 (+)
LOC110535025 LOC106580143 coding downstream 453783 43157632 ~ 43208004 (+)
LOC110535720 NA coding downstream 1326689 44030538 ~ 44054846 (+)
LOC110535722 LOC106580138 coding downstream 1415632 44119481 ~ 44178070 (+)
LOC110535730 LOC106580238 coding downstream 2150653 44854502 ~ 44865316 (+)
G980019 NA non-coding upstream 66859 42631824 ~ 42636709 (+)
G979987 NA non-coding upstream 134214 42569102 ~ 42569354 (+)
G979985 NA non-coding upstream 137106 42566245 ~ 42566462 (+)
G979984 NA non-coding upstream 137326 42565817 ~ 42566242 (+)
G979707 NA non-coding upstream 579153 42123583 ~ 42124415 (+)
G980171 NA non-coding downstream 162286 42866135 ~ 42866460 (+)
G980175 NA non-coding downstream 166948 42870797 ~ 42871073 (+)
G980191 NA non-coding downstream 184439 42888288 ~ 42888488 (+)
G980194 NA non-coding downstream 185375 42889224 ~ 42889433 (+)
G980204 NA non-coding downstream 212922 42916771 ~ 42928679 (+)
G979965 NA other upstream 170260 42528520 ~ 42533308 (+)
G979689 NA other upstream 624713 42078492 ~ 42078855 (+)
G978396 NA other upstream 1687480 41003076 ~ 41016088 (+)
G978255 NA other upstream 1935339 40767836 ~ 40768229 (+)
G981690 NA other downstream 956525 43660374 ~ 43715297 (+)
G982236 LOC106580137 other downstream 1577076 44280925 ~ 44285969 (+)
LOC110535735 fibcd1 other downstream 2679558 45189846 ~ 45413082 (+)
G984422 pesc other downstream 3404071 46107920 ~ 46109940 (+)
G985257 NA other downstream 3903543 46607392 ~ 46607681 (+)

Expression


Co-expression Network