G980175


Basic Information

Item Value
gene id G980175
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 42870797 ~ 42871073 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1116019
CCGCACCGCCCCTATGACTGTgggattgaccttctccctagCATCACGCTGCCCCGGGGACATCTGTACTCTCTGTTGGGAccagagaccaaggctatggagacctacattgggAACTCCCTATCTACAGGATTTATCCGTCCAtctatcccctgtgtatttatacctgtgttctctgtttgtctgttgccagtttgtcttgtttgtcaagtcaaccagcgtttttgtgtctcagctcctgcttttcccagtctccctttttctcgccctccaggtt

Function

NR:

description
Retrotransposable element Tf2 protein type 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1116019 True 277 lncRNA 0.51 1 42870797 42871073

Neighbor

gene id symbol gene type direction distance location
fam81b fam81b coding upstream 9354 42839548 ~ 42861443 (+)
slf1 slf1 coding upstream 241066 42592008 ~ 42629731 (+)
LOC110535709 LOC106580150 coding upstream 713771 42146000 ~ 42157026 (+)
LOC118937354 NA coding upstream 1109944 41715130 ~ 41760853 (+)
LOC118937445 NA coding upstream 1171547 41669796 ~ 41699250 (+)
LOC110535025 LOC106580143 coding downstream 286559 43157632 ~ 43208004 (+)
LOC110535720 NA coding downstream 1159465 44030538 ~ 44054846 (+)
LOC110535722 LOC106580138 coding downstream 1248408 44119481 ~ 44178070 (+)
LOC110535730 LOC106580238 coding downstream 1983429 44854502 ~ 44865316 (+)
LOC110536623 NA coding downstream 2018656 44889729 ~ 44895936 (+)
G980171 NA non-coding upstream 4337 42866135 ~ 42866460 (+)
G980072 NA non-coding upstream 166948 42703568 ~ 42703849 (+)
G980019 NA non-coding upstream 234088 42631824 ~ 42636709 (+)
G979987 NA non-coding upstream 301443 42569102 ~ 42569354 (+)
G979985 NA non-coding upstream 304335 42566245 ~ 42566462 (+)
G980191 NA non-coding downstream 17215 42888288 ~ 42888488 (+)
G980194 NA non-coding downstream 18151 42889224 ~ 42889433 (+)
G980204 NA non-coding downstream 45698 42916771 ~ 42928679 (+)
G980209 NA non-coding downstream 48233 42919306 ~ 43029136 (+)
G980206 LOC106580271 non-coding downstream 66861 42937934 ~ 42939080 (+)
G979965 NA other upstream 337489 42528520 ~ 42533308 (+)
G979689 NA other upstream 791942 42078492 ~ 42078855 (+)
G978396 NA other upstream 1854709 41003076 ~ 41016088 (+)
G978255 NA other upstream 2102568 40767836 ~ 40768229 (+)
G981690 NA other downstream 789301 43660374 ~ 43715297 (+)
G982236 LOC106580137 other downstream 1409852 44280925 ~ 44285969 (+)
LOC110535735 fibcd1 other downstream 2512334 45189846 ~ 45413082 (+)
G984422 pesc other downstream 3236847 46107920 ~ 46109940 (+)
G985257 NA other downstream 3736319 46607392 ~ 46607681 (+)

Expression


Co-expression Network