G980206 (LOC106580271)


Basic Information

Item Value
gene id G980206
gene name LOC106580271
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 42937934 ~ 42939080 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1116052
TATATCATGCTAGCTTATATTAAAACAATTGTGACCTTACTGTCCCATTGatcaattacatttgATTTGTACATTTATTTTCAAGCTGCATAATTTAGTTATCTACTTTTAACTGTATTTCCTTGATTGCATTTCCTTGTTTGAAGATAGTGTTCAAGAAAGAACGCAAACACAGATCTAGATCGCAATTCAATCTTGAACATCATCTCACTCATTGGCCTTCAGTGCCTTCATCAGAACATTGTGTGCATCATCAGCCAGCTCGTTCAGACACTTCATCAATATGTAGTAGGTTGTACCAATGGAAATCACTGCTGCAGCAATGCTGCCGGCAGCAGGAATGTTACTTAATAGGTACTCAGATGTCGTCAACGCTGTTAGAGCTGCACTTTGAAGCAACTTGACAATCACATCTTTGCCAATTTTTTTTTGGTTCAGTGGTGACTTGAGGACTGCTTTCAGCTCCTCCACCGACACATTCATTCTGTTTGCAAGGCTCTGCAGGGACTCATCATCAAGACCGAAAGCGTGATAGTACTTCTTGATCTCATTTACCAAGATGCTTACATCTACAGCAATGGAAAGGCCTGGGATAGGTAGTACTGCCACAGAGCCAGATACTAAAGCTAGTCTCCACATGTTGGCTTTGAAAGCCTCCTTCTTCCTCTGGTTGATTTTCAGGGTTATATTAGGGATGGACAACAGTAGTACATGCCCCTTGTGGTCAGGAAGCTCTTTCTCCATTGTCTCCTGAAGGTCAGGGAAATCGTAGAGACCTAAGTCAAAACCAGAGATGAGAAAGACCTTAGGAGAGCCCAGACCCTCAAGCCCTGAGGAGCAAAACAAAGTATAGTCAAATACAAACACAGTAACTAGAATATGAAAAAACAAATTCTGTTTGTATTTGTTTAGCAGTAGAAAACattagtatacagtaccag

Function

NR:

description
interferon-inducible GTPase 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1116052 True 941 lncRNA 0.41 2 42937934 42939080

Neighbor

gene id symbol gene type direction distance location
fam81b fam81b coding upstream 76491 42839548 ~ 42861443 (+)
slf1 slf1 coding upstream 308203 42592008 ~ 42629731 (+)
LOC110535709 LOC106580150 coding upstream 780908 42146000 ~ 42157026 (+)
LOC118937354 NA coding upstream 1177081 41715130 ~ 41760853 (+)
LOC118937445 NA coding upstream 1238684 41669796 ~ 41699250 (+)
LOC110535025 LOC106580143 coding downstream 218552 43157632 ~ 43208004 (+)
LOC110535720 NA coding downstream 1091458 44030538 ~ 44054846 (+)
LOC110535722 LOC106580138 coding downstream 1180401 44119481 ~ 44178070 (+)
LOC110535730 LOC106580238 coding downstream 1915422 44854502 ~ 44865316 (+)
LOC110536623 NA coding downstream 1950649 44889729 ~ 44895936 (+)
G980204 NA non-coding upstream 9255 42916771 ~ 42928679 (+)
G980194 NA non-coding upstream 48501 42889224 ~ 42889433 (+)
G980191 NA non-coding upstream 49446 42888288 ~ 42888488 (+)
G980175 NA non-coding upstream 66861 42870797 ~ 42871073 (+)
G980171 NA non-coding upstream 71474 42866135 ~ 42866460 (+)
G980255 NA non-coding downstream 50069 42989149 ~ 42989509 (+)
G980891 NA non-coding downstream 120769 43059849 ~ 43060183 (+)
G980920 NA non-coding downstream 140486 43079566 ~ 43079842 (+)
G980953 NA non-coding downstream 166789 43105869 ~ 43106192 (+)
G980977 NA non-coding downstream 187420 43126500 ~ 43127182 (+)
G980019 NA other upstream 301225 42631824 ~ 42636709 (+)
G979965 NA other upstream 404626 42528520 ~ 42533308 (+)
G979689 NA other upstream 859079 42078492 ~ 42078855 (+)
G978396 NA other upstream 1921846 41003076 ~ 41016088 (+)
G978255 NA other upstream 2169705 40767836 ~ 40768229 (+)
G981690 NA other downstream 721294 43660374 ~ 43715297 (+)
G982236 LOC106580137 other downstream 1341845 44280925 ~ 44285969 (+)
LOC110535735 fibcd1 other downstream 2444327 45189846 ~ 45413082 (+)
G984422 pesc other downstream 3168840 46107920 ~ 46109940 (+)
G985257 NA other downstream 3668312 46607392 ~ 46607681 (+)

Expression


Co-expression Network