G980891


Basic Information

Item Value
gene id G980891
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 43059849 ~ 43060183 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1116813
aaactctctccagaagttcagtgaggatctttgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtctgttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1116813 True 335 lncRNA 0.42 1 43059849 43060183

Neighbor

gene id symbol gene type direction distance location
fam81b fam81b coding upstream 198406 42839548 ~ 42861443 (+)
slf1 slf1 coding upstream 430118 42592008 ~ 42629731 (+)
LOC110535709 LOC106580150 coding upstream 902823 42146000 ~ 42157026 (+)
LOC118937354 NA coding upstream 1298996 41715130 ~ 41760853 (+)
LOC118937445 NA coding upstream 1360599 41669796 ~ 41699250 (+)
LOC110535025 LOC106580143 coding downstream 97449 43157632 ~ 43208004 (+)
LOC110535720 NA coding downstream 970355 44030538 ~ 44054846 (+)
LOC110535722 LOC106580138 coding downstream 1059298 44119481 ~ 44178070 (+)
LOC110535730 LOC106580238 coding downstream 1794319 44854502 ~ 44865316 (+)
LOC110536623 NA coding downstream 1829546 44889729 ~ 44895936 (+)
G980209 NA non-coding upstream 30713 42919306 ~ 43029136 (+)
G980255 NA non-coding upstream 70340 42989149 ~ 42989509 (+)
G980206 LOC106580271 non-coding upstream 120769 42937934 ~ 42939080 (+)
G980204 NA non-coding upstream 131170 42916771 ~ 42928679 (+)
G980194 NA non-coding upstream 170416 42889224 ~ 42889433 (+)
G980920 NA non-coding downstream 19383 43079566 ~ 43079842 (+)
G980953 NA non-coding downstream 45686 43105869 ~ 43106192 (+)
G980977 NA non-coding downstream 66317 43126500 ~ 43127182 (+)
G980980 NA non-coding downstream 67935 43128118 ~ 43128364 (+)
G981035 LOC106580142 non-coding downstream 169113 43229296 ~ 43234003 (+)
G980019 NA other upstream 423140 42631824 ~ 42636709 (+)
G979965 NA other upstream 526541 42528520 ~ 42533308 (+)
G979689 NA other upstream 980994 42078492 ~ 42078855 (+)
G978396 NA other upstream 2043761 41003076 ~ 41016088 (+)
G978255 NA other upstream 2291620 40767836 ~ 40768229 (+)
G981690 NA other downstream 600191 43660374 ~ 43715297 (+)
G982236 LOC106580137 other downstream 1220742 44280925 ~ 44285969 (+)
LOC110535735 fibcd1 other downstream 2323224 45189846 ~ 45413082 (+)
G984422 pesc other downstream 3047737 46107920 ~ 46109940 (+)
G985257 NA other downstream 3547209 46607392 ~ 46607681 (+)

Expression


Co-expression Network