XLOC_028778


Basic Information

Item Value
gene id XLOC_028778
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 23160015 ~ 23210241 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058206
CACGTGATTACCAGTTGTCAAAAGAGACACGTTACCAGTTTAAAGCTCCTTTGAGGATGGAGATCTGGAGGCTCAGTGAGTGTCTGAGAGCTGAGTGACACAACATTTAACTTTAGTCCTGATAACAGACAGAGATCAGCCTCTCTTCATGTGTGAAGACGCATTTGGGATTACAGATGTCAGTTTTGGGATATTCTTCATACTGCACACCCAAGATGACAGCTGAGAAGCCAGAAGCAAGACAGTCATACATGATTGGACATTTGAAGCAACATTATGAACAACTGCCGAGACAACAATCAGTCAGCTTTCAGAAGTGGatattcagcagagaaatccctGCCTGTCCATCAGCAAAGCCCAGCAGCTTGTTAGAACTGCTTCCATCATCTATCCTCATTCTGTTGGATCTGTCGGCAACACACCTGGAGAGGGGGAAAATGCTTTACACAACGTCCACTTCAGGACCAACCCTAATGTGACGGATCTGGGCCTATTTAATGGTGACAGATGGATGACATTATAGACCTCGACTAACCTTTAAAGTTGGTTGATGAATATGTGGAGTGTCGAATCGTCTTTTATCTTTGGCCAAACGAGGCCTCGATGTCCGTTATGAAGATTAAATCGGCTTGTATGATGGTGCTAATGTTGTCTAGGTTTAATAATGTTACAGCGTTTGTATGAAGATACATGAAATGAAGATTGATTGTGTGTGGAATTACACTCTCATTCTGTGCTCATTTTATTCGGCCGCCTTACAGCAAAAACATCTGCTAAACCGATTTGAGTAGCCAATGTAATGTAACACGTCATTAAC
>TCONS_00057352
ttataaagacatggcggggtaaaatttaatttaacgcagtgctttttgtacaatctgagacccactttatatcggatatcattcagccagtggagatcgatgatttttaaagaaaacagaccttaaaagcGCCGATTTACTTCACCGGaaacgcttaacccaggttactggcaaattaaaagttctAGGAATGACACGTGATTACCAGTTGTCAAAAGAGACACGTTACCAGTTTAAAGCTCCTTTGAGGATGGAGATCTGGAGGCTCAGTGAGTGTCTGAGAGCTGAGTGACACAACATTTAACTTTAGTCCTGATAACAGACAGAGATCAGCCTCTCTTCATGTGTGAAGACGCATTTGGGATTACAGATGTCAGTTTTGGGATATTCTTCATACTGCACACCCAAGATGACAGCTGAGGTAAATGTTCAATATGTAAGTCTGTTTATTTGCAGTAGTGATTAGAATTTATTGCTAaatttgtg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058206 False 820 lncRNA 0.43 5 23160015 23210047
TCONS_00057352 True 486 lncRNA 0.39 2 23204622 23210241

Neighbor

gene id symbol gene type direction distance location
XLOC_028777 NA coding downstream 34375 23119419 ~ 23125640 (-)
XLOC_028776 magi2a coding downstream 76828 22755465 ~ 23083187 (-)
XLOC_028775 nup107 coding downstream 410462 22730795 ~ 22749553 (-)
XLOC_028774 cd36 coding downstream 488546 22658472 ~ 22671469 (-)
XLOC_028773 kdm7aa coding downstream 640490 22484830 ~ 22519525 (-)
XLOC_028779 AL929141.1 coding upstream 16492 23226733 ~ 23226849 (-)
XLOC_028780 CR394543.1 coding upstream 209079 23419320 ~ 23419455 (-)
XLOC_028781 trhde.2 coding upstream 230163 23440404 ~ 23643272 (-)
XLOC_028782 AL929006.1 coding upstream 241576 23451817 ~ 23451931 (-)
XLOC_028783 cpm coding upstream 530414 23740655 ~ 23759213 (-)
XLOC_028768 NA non-coding downstream 868262 22282725 ~ 22291753 (-)
XLOC_028767 BX537162.1 non-coding downstream 922721 22236358 ~ 22237294 (-)
XLOC_028764 BX569790.2 non-coding downstream 1502909 21656245 ~ 21657106 (-)
XLOC_028762 NA non-coding downstream 1512023 21634012 ~ 21647992 (-)
XLOC_028784 NA non-coding upstream 558237 23768478 ~ 23873924 (-)
XLOC_028786 NA non-coding upstream 1043525 24253766 ~ 24376025 (-)

Expression


Co-expression Network