G982175


Basic Information

Item Value
gene id G982175
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 44255189 ~ 44256841 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1118152
TGGTCCATCTTCTTTTCAAAGGTACTTGGCTTTTATTTTTCATATTCACGGGTAAAGTATGGACGTGTAAAGACAATTAAGCAACGCCTTTCCCATTACTCTGTatagtgcctttagaaagtattcatccgcttgacttattccaaattgtgttgtgttacagcctgaattcaaaaatgGATTGAAGttcacacaataacacaaaatgacattttctcaaatatattgaaaatgaaatacagaaatatctcatttactaAACATTCACACCCCtgggtcaatactttgtagaagtctctctgggtaagtctccaggagctttccacacctgtatTGTACAACATTtgttcattattatttttttatttaaccaggtaggccagttgagaacaagttctgatttgcaactgggacctggccaagacaaagcaaagcagtgcgacaaaaaacaacaacacagagttacacgtgagataaacaaaagtacaggcaatagaaaaatctatatacagtgtgtgcaaatgcagtaaggaggtaaggcaaaaaTTTGTAattgtgatagatgtgcagatgataatgtgcaagtagaaatactggtgagcaaaagagcaaaaaaaagtaaataaaaaatatggggatgaggggatgaggtaggtagttggatgggctatttacagatgggctgtgttaatcattgctagacaaccattttcaagtattTCCATAGAttgtcaagtagatttaagtcaaaactgtaacttggccactcaggaacattcactgtgtagatttggccttgtgttttaggttattgtcctgctgaaaggtgatttCATCCCCAAGTGTCTGaatcaggattttgcctgtgctctattacatatatttttaatcctgaaaaacttccaagtccttaacaattacaagcatacccataacatgatgcagccaccactatgcttgaacataTAGAGTAGTacttagtaatgtgttgtattggatttgaccccaaacttaacactttgtattcaggacaaaaagtgtatttctttgTTAACTGTTTAGCAGTTTTTCTTTagagccttgttgcaaacaggatgcatgttttggggtAGTTTTATTCTGTACCTGTGTCATGTTAACTGTCTTCAAACTCCCAGCCATAAATGAttcaaggcgcagcgtgcatgtaATTCCACATCTTTAATAAAGTGAAACCTTCACAAATAACAGGTAAACAGAAACCGAACGTGAACCAACcgtggcgcacacaaacacacacagaaaataaataattacccacaaacacaggtgggaaaaggctgcctaagtatgattcccaatcagagacaatgatagacagctgcctctgattgtgaaccatacccggccaacaaagaaacagacaaactagaatgcccacccaaatcacaccctgacctaaccaaatagagaaatagaaaggctctctaaggtcagggtgtgacaacctgcttccttcttttcactctgtcaattagcttagcattgttgagtaactacaatgttgttgatccatcctcagttttctccaatcacagccattaaactctgtaactgttttgaaGTAACCATTGGCCttatgatgaaatccctgagtggtgtccttcttctctg

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1118152 True 1653 lncRNA 0.38 1 44255189 44256841

Neighbor

gene id symbol gene type direction distance location
LOC110535722 LOC106580138 coding upstream 77119 44119481 ~ 44178070 (+)
LOC110535720 NA coding upstream 222568 44030538 ~ 44054846 (+)
LOC110535025 LOC106580143 coding upstream 1047185 43157632 ~ 43208004 (+)
fam81b fam81b coding upstream 1393746 42839548 ~ 42861443 (+)
slf1 slf1 coding upstream 1625458 42592008 ~ 42629731 (+)
LOC110535730 LOC106580238 coding downstream 597661 44854502 ~ 44865316 (+)
LOC110536623 NA coding downstream 632888 44889729 ~ 44895936 (+)
LOC110535026 LOC106580237 coding downstream 643276 44900117 ~ 44910458 (+)
LOC110535028 LOC106580235 coding downstream 737128 44993969 ~ 45004309 (+)
LOC110535732 LOC100196865 coding downstream 804397 45058392 ~ 45075192 (+)
G982217 NA non-coding upstream 6404 44248519 ~ 44248785 (+)
G982214 NA non-coding upstream 14185 44240793 ~ 44241004 (+)
G982207 NA non-coding upstream 21527 44233429 ~ 44233662 (+)
G982206 NA non-coding upstream 23717 44231249 ~ 44231472 (+)
G982132 NA non-coding upstream 127032 44084595 ~ 44128157 (+)
G982174 NA non-coding downstream 443 44257284 ~ 44259040 (+)
G982268 NA non-coding downstream 64886 44321727 ~ 44321950 (+)
G982271 NA non-coding downstream 72171 44329012 ~ 44329287 (+)
G982280 NA non-coding downstream 88838 44345679 ~ 44346059 (+)
G982309 NA non-coding downstream 159880 44416721 ~ 44435423 (+)
G981690 NA other upstream 539892 43660374 ~ 43715297 (+)
G980019 NA other upstream 1618480 42631824 ~ 42636709 (+)
G979965 NA other upstream 1721881 42528520 ~ 42533308 (+)
G979689 NA other upstream 2176334 42078492 ~ 42078855 (+)
G978396 NA other upstream 3239101 41003076 ~ 41016088 (+)
G982236 LOC106580137 other downstream 24084 44280925 ~ 44285969 (+)
LOC110535735 fibcd1 other downstream 1126566 45189846 ~ 45413082 (+)
G984422 pesc other downstream 1851079 46107920 ~ 46109940 (+)
G985257 NA other downstream 2350551 46607392 ~ 46607681 (+)
G985387 LOC106586052 other downstream 2590862 46847703 ~ 46875441 (+)

Expression


Co-expression Network