G982236 (LOC106580137)


Basic Information

Item Value
gene id G982236
gene name LOC106580137
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 44280925 ~ 44285969 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1118214
GTGTGAGAGATagagtgtcaGTAAGCCTATGAAAGTCTGTACATATACACTTGTGCATATCTTGTTCTGAGTACACACTTGTGCTCTATTGGTTCCTCATGGGGACTCTGAAGACAGAAGGCCGCATTGTTGCTGTAAAACTATCAGTCATCAAATTTTACAGCCCACTGGAGGGGTCACTCTTACTTGGCAGCTCtttcaaataaaaacatttctaaaTTCACAATTTGATccatgaaacaaaaacagaagacataaaaatggtagtTTCCCTACTGGCTCTACAAGGGGTGGACGGGGACAGGGGAGGGTGGAGGAAAGAGGCTGTATCTTACAATTGGCATTTGACTTGACACTTCTCCTATTGATCAACATGCCCTTTTAGTTGTACACCAACCTAACAGCAGGGATCTTACTCACATTCACACGTACCATTCCCTTGACCAAGGCCTGTGTGTTGCTGCCCTCCCTGACTGTCGTCACAACTGGTCAGCTCTTCCAGTATGGCTCAGTTTGTACCAAGGACAGTAAAGGGGGGATAAAATATTTCAGAAATCATAAGGAACGTACATTTAAAAACCCATGTTCGTCCTTGGTAGCCAGTTAGACATATTTAAGTTTAACAGTTTCAAGTGACGGGATCTCAGCAGGGACTCTCCCAGTGAGGTGTCCCCTCCTTCTCCAGTAGGACAAGCATCGCAGTGGTGACCTCTTATTGGCTGCTTTAGTTCACACATCCCTTTACAACATCCAcagccgccccccccccccaccacaaggTTCTCTGCTGCTCTGTTTAAGACTGTACACACATAAATATTACCATTACTCTCATTTATATTAGTGTCTTTTTGTTAAGGATTTGTGAATCCTGCTCtcaaaataaaaaggtagtaaaagTCAAGTTAAGAGTCATCCATGAAGGAAGCACTGGGGGGTGAACCAGGGGTTCTCTGCAGATATGGTCATGAGTGACGTGGCtgtgggagaggagaagggtTGTCCTTAGAGCCCTGCCCCACACAGTCGTTTCTGAACGGGGCTGGAACAGAGCCCAGTGGGACACCACCCTGACCCTGGGGGAATGCTGCTATGCCGCCATGAGATACTGGTGGTAGAAGAGGCCGAAGATGGAGGTGGAAAAGAGGCAGGCAGCGATCCACCaggtgaggaaggagaggaggccacGGAAAAGCAAGGGGGTGAACACTGTTCGCAGGCCCCCGAGGGCCACCGACAACTGGACCACCGATGCCTGGGCCACCACAGCCAGCCCTGGAGCTGCAGTTGCTACTGCAACCACAGCAGGGTCAGAGTTAATCTCCATTGGGCAGGGGAGGTCTTCCTCAGAGTACACCC

Function

NR:

description
transmembrane protein 161B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1118214 True 1359 TUCP 0.49 2 44280925 44285969

Neighbor

gene id symbol gene type direction distance location
LOC110535722 LOC106580138 coding upstream 102855 44119481 ~ 44178070 (+)
LOC110535720 NA coding upstream 248304 44030538 ~ 44054846 (+)
LOC110535025 LOC106580143 coding upstream 1072921 43157632 ~ 43208004 (+)
fam81b fam81b coding upstream 1419482 42839548 ~ 42861443 (+)
slf1 slf1 coding upstream 1651194 42592008 ~ 42629731 (+)
LOC110535730 LOC106580238 coding downstream 568533 44854502 ~ 44865316 (+)
LOC110536623 NA coding downstream 603760 44889729 ~ 44895936 (+)
LOC110535026 LOC106580237 coding downstream 614148 44900117 ~ 44910458 (+)
LOC110535028 LOC106580235 coding downstream 708000 44993969 ~ 45004309 (+)
LOC110535732 LOC100196865 coding downstream 775269 45058392 ~ 45075192 (+)
G982174 NA non-coding upstream 21885 44257284 ~ 44259040 (+)
G982175 NA non-coding upstream 24084 44255189 ~ 44256841 (+)
G982217 NA non-coding upstream 32140 44248519 ~ 44248785 (+)
G982214 NA non-coding upstream 39921 44240793 ~ 44241004 (+)
G982207 NA non-coding upstream 47263 44233429 ~ 44233662 (+)
G982268 NA non-coding downstream 35758 44321727 ~ 44321950 (+)
G982271 NA non-coding downstream 43043 44329012 ~ 44329287 (+)
G982280 NA non-coding downstream 59710 44345679 ~ 44346059 (+)
G982309 NA non-coding downstream 130752 44416721 ~ 44435423 (+)
G982301 NA non-coding downstream 133619 44419588 ~ 44421818 (+)
G981690 NA other upstream 565628 43660374 ~ 43715297 (+)
G980019 NA other upstream 1644216 42631824 ~ 42636709 (+)
G979965 NA other upstream 1747617 42528520 ~ 42533308 (+)
G979689 NA other upstream 2202070 42078492 ~ 42078855 (+)
G978396 NA other upstream 3264837 41003076 ~ 41016088 (+)
LOC110535735 fibcd1 other downstream 1097438 45189846 ~ 45413082 (+)
G984422 pesc other downstream 1821951 46107920 ~ 46109940 (+)
G985257 NA other downstream 2321423 46607392 ~ 46607681 (+)
G985387 LOC106586052 other downstream 2561734 46847703 ~ 46875441 (+)
G985401 NA other downstream 2636970 46922939 ~ 46923827 (+)

Expression


Co-expression Network