G982301


Basic Information

Item Value
gene id G982301
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 44419588 ~ 44421818 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1118285
GATGGGAGAGTGTATGTACTATGCACCTTAGCTAATAAAGGGCGACATCTAGTGGTTATTGTGGAGAAAGTATCACGTGCCACGTAGTTAAATTGAGGGTCACCAGTTTTTGGAAGTTTCGATTATTTCTCGTTTAGGAACAAACGAGATCATGTCAGCAAAAGGTCATGCAAACCACAAAGTCGGTAGCCTAAATAACGAACGAATTATTACAAAAATAATGCCTATGGATTGACAAAAGACCATACACGTCTAAAGAAAGCGATGTCTAGCCAATAACACATCCTTCAAATTTTACATTAGGTGGAATGTTTTTTCTTCTTAAATTGAAGGGTAAATACAACGAATATGTTTTGAAATAAACTGCAATGGAATTGCATAGCCTGCTATTCCTCAATTTAATTGTCATTCTTCTTCTCATGTCTGATTTTGAGCCATATGCCTATGCTTTTATTGAATTTATTTCTAAACATGGCTCTGTGTTTGCGTACTATTATTATTAGGATATGCTATTCTTCGATTTAACACGCTTTGAATTAgcctacaattatttttctgtcGTGTGATCTATTTTTACAATTTCAATTAATGGTGAAGTATCAATGAACTGTCTAAAATAACAACAGTTCACTTCTTTCAGCATTGCATGCACTAGGGTCAATTTATTTTATTCGATTCGTTATTCCGGTGAGTAACATTTTAATTAGCTTACATAAATATAAAGTGAAAGTAATTCCACATATTATACTTCAGATCTTCTCGCTCTTGTTTATCATATGAAGAAAAAGCTTATTTTAGCTCCTGACTTGAGCGGCTGTGTTTGCCTTTCCAACTTGCTCTCCTTGCACCACTGCACACGCTGTGGCCGCAGCAATCCCGGTTCGAATCTAGGTCACGGCAGTTTTTATGTTACATAATCCATGTGCTTTCAATATCGAATTATCTTATATGATTTCACTCAGTCTTGATTCATGTGAATTTAACGAGGTTACCTATTCAATgtactaaaataaataaataggtttaAATAGTCTTACGTCTGGATCTGtccttattttttaaattgataCATTCGATTTATGATAGCATGTTATTGTATTATTGTAGCCTACTCTAAGAGTTTATATTatgaaaattggggagaaaaaaaagacatGGCAATTGGGGGCGCAGTTGACAGGAATAGTTGCTTGTAGCAATactttcccactgggcacagacctcaGtttggttggaTTAACTCACGTAAATTCAGCGCGatatcaacaaaaaatgtcaccctTTCATTGGATGTAGGGTAAAAGTTGGATGAAAAAATACGAAATTCTCTCAATCCAATCAGTGTTCCACGTTCATTCAATATCATCACGTTTTTTTGatgttgttgaaatgacatggaaataactttgattcaaacagtttttgccTAGTCGGTTGCGCAATTGTATTTCAACTGTTTTGTCCAAATGTCATTTAAGTTTAGTTCTCTGCTTCAAATTGCGCACAGGTTGCTTAATCGTTTTGTAGCAAATAGCCCAATGACTCTTTCCCAAGTATTGGTTTCACATGTTTCAAATTTCACACATTTGCATCCATTTTAGATctagtttttcaggataaaaccCCCCACATTAATTCTACCAGTTAATTAATCTTCAGCTAAAATGTGTCTTCCTGAAATGTCTTGTTCTTGATATCAAGTTTTCCCCAACCATTTATGGACATATGTTCTTGTTTGTCAGGCTGATAGGTAAAGGGTGAAATCGTACATTATTAAGCCACACCAGGACAATTGAAGGTTAGAGCGGCCTATACTAGTCTACAACCATTCCACAACCATAATAGCTACAACCATTCTCAATGTAAGACGAACATGATGAAGCACCTTCAATACATGTTTTTTCTTCTTCGTTGAATTAACCGCTCACGCTGTCTGGGATTTTTAGTACTCTGTGACCGTTGTTCCATTGAGTTTGATGGGGGAATTATTATCAGTCTTTCCGAAATGTGGataatgcatttttttttcttGCATATGCTCAGAATAAATGTATGTTTACTGGCAAAATGTATCACTGAATGTGATGTGAAATAAACCTTAGCTGTAAATGtcaaataaaagtatgtcatttgAGTTCCCATGACTCAATGCCATGATTTGGTAACCTTACTACGCTACAGTTGGAAGAAATAAAGCAAAAAAATGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1118285 True 2207 lncRNA 0.35 2 44419588 44421818

Neighbor

gene id symbol gene type direction distance location
LOC110535722 LOC106580138 coding upstream 241518 44119481 ~ 44178070 (+)
LOC110535720 NA coding upstream 386967 44030538 ~ 44054846 (+)
LOC110535025 LOC106580143 coding upstream 1211584 43157632 ~ 43208004 (+)
fam81b fam81b coding upstream 1558145 42839548 ~ 42861443 (+)
slf1 slf1 coding upstream 1789857 42592008 ~ 42629731 (+)
LOC110535730 LOC106580238 coding downstream 432684 44854502 ~ 44865316 (+)
LOC110536623 NA coding downstream 467911 44889729 ~ 44895936 (+)
LOC110535026 LOC106580237 coding downstream 478299 44900117 ~ 44910458 (+)
LOC110535028 LOC106580235 coding downstream 572151 44993969 ~ 45004309 (+)
LOC110535732 LOC100196865 coding downstream 639420 45058392 ~ 45075192 (+)
G982280 NA non-coding upstream 73529 44345679 ~ 44346059 (+)
G982271 NA non-coding upstream 90301 44329012 ~ 44329287 (+)
G982268 NA non-coding upstream 97638 44321727 ~ 44321950 (+)
G982174 NA non-coding upstream 160548 44257284 ~ 44259040 (+)
G982175 NA non-coding upstream 162747 44255189 ~ 44256841 (+)
G982302 LOC106580134 non-coding downstream 4471 44426289 ~ 44428926 (+)
G982376 NA non-coding downstream 109666 44531484 ~ 44531704 (+)
G982380 NA non-coding downstream 114440 44536258 ~ 44536528 (+)
G982381 NA non-coding downstream 115702 44537520 ~ 44537758 (+)
G982395 NA non-coding downstream 136144 44557962 ~ 44558209 (+)
G982236 LOC106580137 other upstream 133619 44280925 ~ 44285969 (+)
G981690 NA other upstream 704291 43660374 ~ 43715297 (+)
G980019 NA other upstream 1782879 42631824 ~ 42636709 (+)
G979965 NA other upstream 1886280 42528520 ~ 42533308 (+)
G979689 NA other upstream 2340733 42078492 ~ 42078855 (+)
LOC110535735 fibcd1 other downstream 961589 45189846 ~ 45413082 (+)
G984422 pesc other downstream 1686102 46107920 ~ 46109940 (+)
G985257 NA other downstream 2185574 46607392 ~ 46607681 (+)
G985387 LOC106586052 other downstream 2425885 46847703 ~ 46875441 (+)
G985401 NA other downstream 2501121 46922939 ~ 46923827 (+)

Expression


Co-expression Network