XLOC_028786


Basic Information

Item Value
gene id XLOC_028786
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 24253766 ~ 24376025 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058207
CTCCTTCTCTCagcactctctctttctcattacGCCAAGATCCTCTCttcatttgttacatttagtTGGAGCTCTCCGGTGCTTTTGGGAAAGGTGGGACGATGCATTTCCCAATCACTATGGCGACGTGTGCTTCTAAGGAGctgctttctggaaccattctttactGGATTTGAACCTCATCGTTGCCATCGACTCCAGTCTCCAGTCCTTTGACTTACACAgcaagccactgggcaaactggtaacagcggaaaagccatccacacggaggt
>TCONS_00058208
CCCGCCTCCAAATTTGCTCCATTTGTCTTGTCGTTCTTGCAGTGCAGGACTGTGTCAGGATTCTCTGATAAATAGATAAAGCTACACAGCCACATTGCTTTTCAACCTCTTCAGAAACCCAATCTACAAATGACTTACAAAGAAGGCTTTAATGAGGGGTCAGTGAAAGAGTTTGCCAGATGAGTGAAATGAATTCCTGGAAAGGTCTGGACACTGAAGTCTCACCTCTCTACAGTTGTCAGCGGTTATTACGctgctttctggaaccattctttactGGATTTGAACCTCATCGTTGCCATCGACTCCAGTCTCCAGTCCTTTGACTTACACAgcaagccactgggcaaactggtaacagcggaaaagccatccacacggaggt
>TCONS_00058209
GTTGAGATGCCTGATAACATTGACCTGGCGGCTGAGGTCTCAGtgcttcACCCTCCGGCTCAAGCACTCCTGCGGTTCATCGCCTCTGAAGGCTTTAATGAGGGGTCAGTGAAAGAGTTTGCCAGATGAGTGAAATGAATTCCTGGAAAGGTCTGGACACTGAAGTCTCACCTCTCTACAGTTGTCAGCGGTTATTACGctgctttctggaaccattctttactGGATTTGAACCTCATCGTTGCCATCGACTCCAGTCTCCAGTCCTTTGACTTACACAgcaagccactgggcaaactggtaacagcggaaaagccatccacacggaggt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058207 False 275 lncRNA 0.49 2 24253766 24269283
TCONS_00058208 False 385 lncRNA 0.46 3 24253766 24309850
TCONS_00058209 True 331 lncRNA 0.50 4 24253766 24376025

Neighbor

gene id symbol gene type direction distance location
XLOC_028785 celf2 coding downstream 221842 23886726 ~ 24031924 (-)
XLOC_028784 NA coding downstream 379842 23768478 ~ 23873924 (-)
XLOC_028783 cpm coding downstream 494553 23740655 ~ 23759213 (-)
XLOC_028781 trhde.2 coding downstream 610494 23440404 ~ 23643272 (-)
XLOC_028782 AL929006.1 coding downstream 801835 23451817 ~ 23451931 (-)
XLOC_028787 NA coding upstream 125104 24501129 ~ 24643509 (-)
XLOC_028788 NA coding upstream 350070 24726095 ~ 24790741 (-)
XLOC_028789 NA coding upstream 457501 24833526 ~ 25049007 (-)
XLOC_028790 gata3 coding upstream 678485 25054510 ~ 25064510 (-)
XLOC_028791 taf3 coding upstream 708203 25084228 ~ 25168458 (-)
XLOC_028780 CR394543.1 non-coding downstream 834311 23419320 ~ 23419455 (-)
XLOC_028779 AL929141.1 non-coding downstream 1026917 23226733 ~ 23226849 (-)
XLOC_028778 NA non-coding downstream 1043525 23160015 ~ 23210241 (-)
XLOC_028794 NA non-coding upstream 869006 25245031 ~ 25247848 (-)
XLOC_028797 NA non-coding upstream 1118431 25494456 ~ 25497067 (-)

Expression


Co-expression Network