XLOC_028787


Basic Information

Item Value
gene id XLOC_028787
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 24501129 ~ 24643509 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058210
GCCAGGTGATCCTAATCAACAACGGCGTCCTGGAAAGGCCTTCATGAATTCTTAACTGGGCGTCTTTCATGTGAGAATTAAGTTGCTCAAACGACCCTTCTGACATTTTCTTCATCTTCCAAACGAATTCGCGTTGAATTCATTCAATAATGACGTTTATTATGGCCGTGGGTTCATTACGACGACGCCAGAGACCGCGCGGGAAATCTGACATGTAGCTGTGTCTGAGTAACCCTGGAGTAATGCGTGGTCAATGCAATGATGCTTTGAAAGGATGGTGCCGGTTGGCCCTGCCCACTTGTAACTTAATTTGCTGTCTTCGGACACCTACTGGCATGTTATCCCTGATGACTCCAGTTCACCTCTCTGAATGGTGGCGGAAGTCGAATGGCAGTGTTCTGTAGCCCTATCAGCGTCCTCCATCCCATAACAACACTCCCACGAGGGCCCCAAGCCAGCATCGATCGCCCAGGTCAGAGGTCACCCGTACGGGACTTGTTAGCTGGAGGCTGCGTATAGCTAAAAGATTTTCAGTGGAGCTGAAAAATAATGCACCGCATAATTATCACCAGCATCCTTAGGAAGTCACTGGAAATGGA
>TCONS_00058211
CGAGTCGCGAGTTTGTGTCATGGCCAGGTGATCCTAATCAACAACGGCGTCCTGGAAAGGCCTTCATGAATTCTTAACTGGGCGTCTTTCATGTGAGAATTAAGTTGCTCAAACGACCCTTCTGACATTTTCTTCATCTTCCAAACGAATTCGCGTTGAATTCATTCAATAATGACGTTTATTATGGCCGTGGGTTCATTACGACGACGCCAGAGACCGCGCGGGAAATCTGACATGTAGCTGTGTCTGAGTAACCCTGGAGTAATGCGTGGTCAATGCAATGATGCTTTGAAAGGATGGTGCCGGTTGGCCCTGCCCACTTGTAACTTAATTTGCTGTCTTCGGACACCTACTGGCATGTTATCCCTGATGACTCCAGTTCACCTCTCTGAATGGTGGCGGAAGTCGAATGGCAGTGTTCTGTAGCCCTATCAGCGTCCTCCATCCCATAACAACACTCCCACGAGGGCCCCAAGCCAGCATCGATCGCCCAGATTTTCAGTGGAGCTGAAAAATAATGCACCGCATAATTATCACCAGCATCCTTAGGAAGTCACTGGAAATGGA
>TCONS_00058212
CGAACGTGAGCACGATCTGCCTCTCTTTCGCCCTATCTTCACTCCGTAGGGGCTTTTGACAGTAACCCTGGAGTAATGCGTGGTCAATGCAATGATGCTTTGAAAGGATGGTGCCGGTTGGCCCTGCCCACTTGTAACTTAATTTGCTGTCTTCGGACACCTACTGGCATGTTATCCCTGATGACTCCAGTTCACCTCTCTGAATGGTGGCGGAAGTCGAATGGCAGTGTTCTGTAGCCCTATCAGCGTCCTCCATCCCATAACAACACTCCCACGAGGGCCCCAAGCCAGCATCGATCGCCCAGATTTTCAGTGGAGCTGAAAAATAATGCACCGCATAATTATCACCAGCATCCTTAGGAAGTCACTGGAAATGGA
>TCONS_00058213
cacAGATAGACCACTCTTGGGACGAACGTGAGCACGATCTGCCTCTCTTTCGCCCTATCTTCACTCCGTAGGGGCTTTTGACAGTAACCCTGGAGTAATGCGTGGTCAATGCAATGATGCTTTGAAAGGATGGTGCCGGTTGGCCCTGCCCACTTGTAACTTAATTTGCTGTCTTCGGACACCTACTGGCATGTTATCCCTGATGACTCCAGTTCACCTCTCTGAATGGTGGCGGAAGTCGAATGGCAGTGTTCTGTAGCCCTATCAGCGTCCTCCATCCCATAACAACACTCCCACGAGGGCCCCAAGCCAGCATCGATCGCCCAGGTCAGAGGTCACCCGTACGGGACTTGTTAGCTGGAGGCTGCGTATAGCTAAAAGATTTTCAGTGGAGCTGAAAAATAATGCACCGCATAATTATCACCAGCATCCTTAGGAAGTCACTGGAAATGGA

Function

GO:

id name namespace
GO:0070013 intracellular organelle lumen cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0001917 photoreceptor inner segment cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043233 organelle lumen cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058210 False 599 lncRNA 0.49 4 24501129 24618981
TCONS_00058211 False 567 lncRNA 0.49 4 24501129 24619003
TCONS_00058212 False 378 lncRNA 0.51 4 24501129 24643487
TCONS_00058213 True 454 lncRNA 0.51 4 24501129 24643509

Neighbor

gene id symbol gene type direction distance location
XLOC_028786 NA coding downstream 125104 24253766 ~ 24376025 (-)
XLOC_028785 celf2 coding downstream 469205 23886726 ~ 24031924 (-)
XLOC_028784 NA coding downstream 627205 23768478 ~ 23873924 (-)
XLOC_028783 cpm coding downstream 741916 23740655 ~ 23759213 (-)
XLOC_028781 trhde.2 coding downstream 857857 23440404 ~ 23643272 (-)
XLOC_028788 NA coding upstream 82586 24726095 ~ 24790741 (-)
XLOC_028789 NA coding upstream 190017 24833526 ~ 25049007 (-)
XLOC_028790 gata3 coding upstream 411001 25054510 ~ 25064510 (-)
XLOC_028791 taf3 coding upstream 440719 25084228 ~ 25168458 (-)
XLOC_028792 atp5f1c coding upstream 529790 25173299 ~ 25181552 (-)
XLOC_028782 AL929006.1 non-coding downstream 1049198 23451817 ~ 23451931 (-)
XLOC_028780 CR394543.1 non-coding downstream 1081674 23419320 ~ 23419455 (-)
XLOC_028779 AL929141.1 non-coding downstream 1274280 23226733 ~ 23226849 (-)
XLOC_028794 NA non-coding upstream 601522 25245031 ~ 25247848 (-)
XLOC_028797 NA non-coding upstream 850947 25494456 ~ 25497067 (-)
XLOC_028802 BX640593.1 non-coding upstream 1197277 25840786 ~ 25840902 (-)

Expression


Co-expression Network