XLOC_028788


Basic Information

Item Value
gene id XLOC_028788
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 24726095 ~ 24790741 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058214
CAGAACTGTTGGAGGGTCAGAGAaatcttggatttcatctaaatttGTTTTCGGAAGACAATTGAAGGTCTCAGGagattggaaaaaaaacatggtgAACTGTAAAAATTACATCACATGGCGTTGGGATGTCTGACATTGGAGCGAGCGCATGATGACTGGATCTCCACACACATGCTGAGGCTCTGCTGTCAATCAGAAGAGGATCTCGGGTGCTGCTGGAGGCTCCATATCCCACAGGTGAGATGAGTATCACTGCTTTCTCCAGTCAGGCATTACCACTGACCcgacacacgcacacatacgcaCATACACAGGTTTGTTATTGTGAACTGTAGGGACATTTCATAGGTTTGCAATGTTTTTTACTGCGCAAACTGTATTTTCTGTT
>TCONS_00058215
CTCTCAGAACTGTTGGAGGGTCAGAGAaatcttggatttcatctaaatttGTTTTCGGAAGACAATTGAAGGTCTCAGGagattggaaaaaaaacatggtgGTCCCGGGAGAGAGGGGCGGGCGGCGTATAATTACGTAGTGGCGATGAGGCCATCCGATAGGCGGGACAGAGGGAATACGGAGAGATAATTAACACCGATACCCAACGCAAGACCAACGCAGGCGAAAGAACTGTAAAAATTACATCACATGGCGTTGGGATGTCTGACATTGGAGCGAGCGCATGATGACTGGATCTCCACACACATGCTGAGGCTCTGCTGTCAATCAGAAGAGGATCTCGGGTGCTGCTGGAGGCTCCATATCCCACAGGTGAGATGAGTATCACTGCTTTCTCCAGTCAGGCATTACCACTGACCcgacacacgcacacatacgcaCATACACAGGTTTGTTATTGTGAACTGTAGGGACATTTCATAGGTTTGCAATGTTTTTTACTGCGCAAACTGTATTTTCTGTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058214 False 391 lncRNA 0.45 2 24726095 24790737
TCONS_00058215 True 524 lncRNA 0.48 3 24726095 24790741

Neighbor

gene id symbol gene type direction distance location
XLOC_028787 NA coding downstream 82586 24501129 ~ 24643509 (-)
XLOC_028786 NA coding downstream 350070 24253766 ~ 24376025 (-)
XLOC_028785 celf2 coding downstream 694171 23886726 ~ 24031924 (-)
XLOC_028784 NA coding downstream 852171 23768478 ~ 23873924 (-)
XLOC_028783 cpm coding downstream 966882 23740655 ~ 23759213 (-)
XLOC_028789 NA coding upstream 42785 24833526 ~ 25049007 (-)
XLOC_028790 gata3 coding upstream 263769 25054510 ~ 25064510 (-)
XLOC_028791 taf3 coding upstream 293487 25084228 ~ 25168458 (-)
XLOC_028792 atp5f1c coding upstream 382558 25173299 ~ 25181552 (-)
XLOC_028793 itih2 coding upstream 397171 25187912 ~ 25215968 (-)
XLOC_028782 AL929006.1 non-coding downstream 1274164 23451817 ~ 23451931 (-)
XLOC_028780 CR394543.1 non-coding downstream 1306640 23419320 ~ 23419455 (-)
XLOC_028794 NA non-coding upstream 454290 25245031 ~ 25247848 (-)
XLOC_028797 NA non-coding upstream 703715 25494456 ~ 25497067 (-)
XLOC_028802 BX640593.1 non-coding upstream 1050045 25840786 ~ 25840902 (-)
XLOC_028804 CT573048.1 non-coding upstream 1215701 26006442 ~ 26007456 (-)

Expression


Co-expression Network