XLOC_002879 (tbl2)


Basic Information

Item Value
gene id XLOC_002879
gene name tbl2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 33253952 ~ 33265566 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005325
GTGctgcatatttttaaacatatacaGGGGATTGTCAAGTCAGTCTGGGAAGTTTGATGCACCGGGACAGCCAGAAGTAAAGCTGCCAGCGGGTCACTGGAGTGAAGTGAACTAAGTGCGACTCGAGTTACAGAAACGCAGATCTTCTGCTATACAGCAAGTCTTATATCGTATATGCTATAGTCTGTTTACCTGTGTCAGGAGTGATAACGTGGCACAAAGCCCTCCAAGATGGAGTTTGCAGCGATCTTTGCTCTGTCGCTACTGATAGGCGCGCTGGTTGTGTTGGTGGCCGTGGCGGTTGGCAGACAGAAAGGCGAATTGTCAGAACAGAAGAAAGACTCCCCTGGGGAGGAAAACACAGCAAAAGCTCCTTCCAGAAagcagaagcagcagcagcaacagcagcgTCCCCGTAAGGAGAGACCGCAGCAGCACACCTTCACACACCAGCTCCTGGCTTCCGCCCTTAAGAGTCACAGTGGTCATGTGACCTGCCTGGACTTTAGCAGCAATGGCAAATACCTTGCTTCTTGCTCAGATGACCGAACCATCAGGATTTGGAGCACTAAAGACTTCCTGGACCGAGATCACAAGTGCTTGCGAGCCAACATTGAGTTTGACCACGCCACGCTCGTCCGTTTCAGCCCAGATTCCCGAGCTTTTATCACCTGGTTGGCTAATGGAGAGACCATTCGTATCTATAAGATGGTCAAAAAGGATGATGGGACGTTCAATTTCAAAGCCGCCCCTGGAGATTTCCCTCAGAAACACAAGGGAGTGATTATCAACATTGGAATTGCTGAGACGGGCAAATTTATCATGTCTGCCTCTGTTGACACAACCATTGTGATCTGGGACCTGAAGGGAGAGGTTTTAGCCACTATTAACACCAATCAGATGACTAACTCGCATGCAGCGGTGTCACCATGTGGAAGGTTTGTAGCGTCCTGTGGCTTCACCCCGGATGTGAAGGTGTGGGAGGTTTGCTTTGGTAAATCAGGGGAGTTCAGAGAAGTGGCCCGTGCCTTTGACCTGAAGGGACACTCGGCTGGGGTTTACTCCTTTGATTTCTCCAATGACTCTCGAAGAATGGTGACGGTGTCCAAAGACGGCACATGGAAGCTGTGGGACACTGATGTGGAGTATAAGAAAAAGCAGGACCCGTATTTGCTCCGGACGGTGCCGTGTAAAGTATCCGAGGGCAGCCGCATCGCCCTGTCCCCCGACGGTCGCGTAGTCGCCATATCAAACGTCTGCGATATAGCCATGTATAACGCCACCACCGGTGAACTAGAAGAGGAGTTTCACAGCGTTCACAACGGGGAAATAACCGACCTGAAGTTCGACATCAACAACCGCTTCCTACTGAGCACCGGAGATCGAGTCATCCGCGTTTTTCACAACGTGACCGGCTACCGAGCCGCCATCCAAGACATGCAGACCATGCTGAAGAAAGCCTCAAATGATGGAGTGAGACAGAGACTCCGGCAGCAGATCACGGACGCTCAGAGCGCTCTGGACACTGTGCTGAACGCTGCCAAAAACTAAAGCCTGAAGGTTTTCACGAGTGCAGAAACGAGTGGGTTTGGCATGCTAGTTTTATTGAATAAATCGAGTGTTTATAAGTTTGTCTGAGGCTTctgtttgttttccattttcaaccTCCCACTAATGctctaatggcccatttccactgagtggtttggtacgggtcacctttatcaggcttgcatttccactgccaaaagggaaTGGTGGGTGTGgggtacgacagaaagtttcagtcgacgtcattcttgctcgaggaaatgtctacaagtcgttcacatatcatacgaCAAGCACTTCTCATagaacagatgctttatacacatacatacttgtgtataaatgttcattactaacctttctatgaacatgatttgattataactgcagatcaatgagaGGGTGAAATAGCCTTCTGTAACgtctgcgattatataaaataaataaataaattcaacatatatgagcacatacagacccttacagtctctgatatgttactaCTTACAGAAAAAAGTAcatacagcatacatttagtccttatttggatTCAAAAGCGACACGCAGCAGCCCACattcagtgcaaacctctcatatgtatatctttaatcttcaccagcacatgtgacctctgttagaaagtactCAGTCATACCAGAGTTCTTAATAGTCCAAAAAATTATGACAATAGTTAAACATGGTAGTTTGTTCAtggtttaggttgctgaaagaatcacttgctcctttgtttttccagcttctcctttgttttttcgcacttcactctcacgtttgtcagtttctgaaaggatcggatgtcagatgcacttcaataatcat

Function

symbol description
tbl2 Is expressed in yolk syncytial layer. Orthologous to human TBL2 (transducin beta like 2).

GO: NA

KEGG:

id description
ko03012 Translation factors

ZFIN:

id description
ZDB-GENE-030131-9012 Is expressed in yolk syncytial layer. Orthologous to human TBL2 (transducin beta like 2).

Ensembl:

ensembl_id ENSDARG00000043357

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005325 True 2391 mRNA 0.47 7 33253952 33265566

Neighbor

gene id symbol gene type direction distance location
XLOC_002878 bcl7ba coding downstream 2076 33240410 ~ 33251876 (-)
XLOC_002877 NA coding downstream 89379 33158589 ~ 33164573 (-)
XLOC_002876 cux1a coding downstream 97163 32898533 ~ 33156789 (-)
XLOC_002875 NA coding downstream 357008 32894997 ~ 32896944 (-)
XLOC_002874 kctd7 coding downstream 363335 32881586 ~ 32890617 (-)
XLOC_002880 PRDM15 coding upstream 3805 33269371 ~ 33297864 (-)
XLOC_002881 c2cd2 coding upstream 40412 33305978 ~ 33343244 (-)
XLOC_002882 ska2 coding upstream 101789 33367355 ~ 33379850 (-)
XLOC_002883 dre-mir-454a coding upstream 111252 33376818 ~ 33376941 (-)
XLOC_002884 dre-mir-301a coding upstream 111435 33377001 ~ 33377086 (-)
XLOC_002871 NA non-coding downstream 473662 32779880 ~ 32780290 (-)
XLOC_002870 NA non-coding downstream 575707 32676810 ~ 32678245 (-)
XLOC_002867 NA non-coding downstream 662490 32584685 ~ 32591462 (-)
XLOC_002885 dre-mir-130a non-coding upstream 111564 33377130 ~ 33377214 (-)
XLOC_002890 NA non-coding upstream 397599 33663165 ~ 33664789 (-)
XLOC_002891 BX569785.1 non-coding upstream 610565 33876131 ~ 33880364 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_16073177_16076377 NA coding CI01000304 null 16073093 ~ 16076440 (-)