G984361


Basic Information

Item Value
gene id G984361
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 46008675 ~ 46017778 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1120493
tgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtatctaaggAAATGATAAACAAGACCTCTTCAAATACAGATAACCAATATATGGTAAGAAAATAAAAGCAAcaagttattatttttttttgcaacAGGACCAACCCCAATGTGACCAGGCCTCAAACTTCAGTTCCCTGAGTTAGTAACAAAGAGCATTCATAGCCTTCAGCAAATATTACATGACCATATCTAAAAGAACAACAGTCATTTAAGTTTTGTTAGAAAGCACAGACATACCTTTTCTATTGCGCAAGCATTAACATAGATTAAAGTACATTTAAATTTCTCGTTTGTGCAATCCACAGATGTagcatcttaatttgatcaccccgatgcaggaaatgcaaacttgtagctAGTGTATTCCattttttaaaaaggcttctaaaagtTTGACATTTCCACTTAAAcgtttcagacttgatttgccctaacaaaaaatgtatcaaattaagatcctgcatctgtatgAGCAAGGCAACAAAGGTCACCACCAATAAGAAGGGATGCATTGTATTCCATAAAATAATGATTTGTAATCATATTGTGAGGATTTcacgtgtgcgtgcgcgtgcatgTACGCGTCAGGTGGGGAAAGGGacattcaattgctgcaactacgGATTATGTGCAGTTTATCGTATGATATTTGCATGGTTGAGGCAAACATTGCAGTTGAAGGTCTAATTGCAACGCTGACAAACCTAAGCGTCGTATTTGTGTGGCTTCGATAGGTAACAATGTCTTTGCTTCTATAAATTGGGGCTGAACAATCTATAAGAAATCCTATTATTTCAACTACCAGATACTGTACCTGGTCTGTTTTAGCCCACATGAGCATACTCAACTAAATTAGTTTGATCTCAACCTTAGAAAACTCCAGTTTAAAATTGTACAGCCCGGTTTTGTTACAGTGTATTGAGGATTATAACTATATACAAAGTTGCATATACAAAAAAATGCAATAACCCTCTCCGGCCCTTTATAAACAAAGTGTACAGGTAGATGCATCATGCAGAAGCACAGAGACTGCATCCAGGATTGCTTTAACTGTGAAATCACAGAACATAGCCATGAGCACACAGTTCTGCCATTACGGCATTGGAGCGTGTTAAAACCGTGTATGGCTCAGGTTATTGGTAAGAATACAGTATGTAATCCATCACCGTAGACGTTCTCTGTCGAACCATCTCAGTCTCGATTCCAAGGGGAGTGACTCCAACAGTCCCAGACAGGGGTCTGCTGCTGTATGTCCACAGTATGGCTGCACGGCATCTCACCAGCACCAAACGTGTCCATATTCTAGTGTCCAACAGACCTCAGACGCACGGAGAGCCTGAGACGTGGAGATTCGCTCACTGCGACCCTTTGTCTATCAACCAAGACATGTCCCCTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1120493 True 1506 lncRNA 0.40 2 46008675 46017778

Neighbor

gene id symbol gene type direction distance location
chek2 chk2 coding upstream 42052 45957602 ~ 46060717 (+)
pomt1 pomt1 coding upstream 121780 45870829 ~ 45886895 (+)
LOC110535740 rapgef1 coding upstream 143314 45820435 ~ 45866751 (+)
LOC110535739 med27 coding upstream 221372 45686941 ~ 45787303 (+)
LOC110535737 LOC106580127 coding upstream 393715 45502852 ~ 45614960 (+)
p2rx2 LOC106580269 coding downstream 110459 46128237 ~ 46133048 (+)
LOC110535755 NA coding downstream 145241 46163019 ~ 46203981 (+)
LOC110535759 myo1h coding downstream 217291 46235069 ~ 46282246 (+)
LOC110535760 LOC106580104 coding downstream 283719 46301497 ~ 46326649 (+)
mvk mvk coding downstream 317807 46335585 ~ 46360745 (+)
G984342 NA non-coding upstream 20843 45971448 ~ 45987832 (+)
G984310 NA non-coding upstream 92284 45889438 ~ 45916391 (+)
G984309 NA non-coding upstream 113448 45890752 ~ 45895227 (+)
G984299 NA non-coding upstream 140403 45868022 ~ 45868272 (+)
G984406 NA non-coding downstream 50226 46068004 ~ 46069268 (+)
G984439 NA non-coding downstream 117904 46135682 ~ 46136223 (+)
G984482 NA non-coding downstream 205929 46223707 ~ 46223979 (+)
G984526 NA non-coding downstream 271446 46289224 ~ 46289425 (+)
LOC110535735 fibcd1 other upstream 595593 45189846 ~ 45413082 (+)
G982236 LOC106580137 other upstream 1722706 44280925 ~ 44285969 (+)
G981690 NA other upstream 2293378 43660374 ~ 43715297 (+)
G980019 NA other upstream 3371966 42631824 ~ 42636709 (+)
G979965 NA other upstream 3475367 42528520 ~ 42533308 (+)
G984422 pesc other downstream 90142 46107920 ~ 46109940 (+)
G985257 NA other downstream 589614 46607392 ~ 46607681 (+)
G985387 LOC106586052 other downstream 829925 46847703 ~ 46875441 (+)
G985401 NA other downstream 905161 46922939 ~ 46923827 (+)
G985597 NA other downstream 1233534 47251312 ~ 47252236 (+)

Expression


Co-expression Network