XLOC_028792 (atp5f1c)


Basic Information

Item Value
gene id XLOC_028792
gene name atp5f1c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 25173299 ~ 25181552 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055794
GGCTGCTCTGACCTTCATTGAAGTGAACATGTTCGCCAGGACCAGCGCGGCGGTGTTCCTCCCACAATGTGGGCAGGTCAGGAACATGGCAACCTTGAAGGACATCACCATTCGGTTGAAGTCCATTAAGAACATCCAGAAGATCACCAAGTCCATGAAGATGGTGGCAGCAGCGAAATATTCCAGAGCTGAGAGGTCCCTGAAGCCCGCCCGAGTCTATGGCACTGGCGCATTGGCTCTCTATGAGAAGGCAGAGATCAAAGCTCCGGAAGACAAGAATAAGCATTTGATCATCGGTGTCTCATCTGACCGTGGTCTTTGCGGTGCCATTCACAGCAGTGTGGCCAAAGCCATCAAGAGTGAGATCGGCAAGCTCTCTGGTGCCGGCAAAGAGGTCATGGTTGTCAATATTGGTGACAAACTCAGAGCTCTGCTCTACAGGACCCATGGCAAACACATCTTGCTCAACTGTAAGGAGGTGGGCCGCAAGCCTCCTACTTTCACCGATGCTTCTATCATTGCCACTGAGCTGCTGAACTCTGGCTATGAGTTCGACCAGGGATCCATTGTATACAACCGATTCAGGTCTGTGATTTCATACAAGACAGACGAGAAACCTTTGTATTCCATGGACACTGTTGCAAGTTCAGagaATATGGGCATCTATGATGACATTGATGCCGATGTGCTGAGGAACTATCAGGAGTTTGCTCTGGTCAACATCATCTACTTTGGGCTGAAAGAGTCCACCACCAGTGAGCAGAGTGCTAGGATGACTGCTATGGACAGTGCTAGCAAGAACGCTTCTGAGATGATCGACAAGCTGACTCTGACCTTTAACCGAACCCGCCAGGCCGTCATCACCAAGGAGCTCATTGAGATCATTTCTGGAGCTGCCGCTTTATAAAGCGGAGCCCTGCAAACGTTCGCTGTGCTTCTGGTGCACTTCAATCACCCGATGTAGAATTCATAAATATCTATGTGCTCCTGTTTGTACAATATCAGAGAAAGTAAATAAAGCTCTTACAGAGAAACACCA

Function

symbol description
atp5f1c Predicted to enable proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in ATP synthesis coupled proton transport. Predicted to act upstream of or within ATP biosynthetic process and ion transport. Predicted to be located in membrane. Predicted to be part of mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1). Orthologous to human ATP5F1C (ATP synthase F1 subunit gamma).

GO:

id name namespace
GO:0006754 ATP biosynthetic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0006811 ion transport biological_process
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8901 Predicted to enable proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in ATP synthesis coupled proton transport. Predicted to act upstream of or within ATP biosynthetic process and ion transport. Predicted to be located in membrane. Predicted to be part of mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1). Orthologous to human ATP5F1C (ATP synthase F1 subunit gamma).

Ensembl:

ensembl_id ENSDARG00000045514

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055794 True 1039 mRNA 0.49 9 25173299 25181552

Neighbor

gene id symbol gene type direction distance location
XLOC_028791 taf3 coding downstream 4841 25084228 ~ 25168458 (-)
XLOC_028790 gata3 coding downstream 108789 25054510 ~ 25064510 (-)
XLOC_028789 NA coding downstream 124292 24833526 ~ 25049007 (-)
XLOC_028788 NA coding downstream 382558 24726095 ~ 24790741 (-)
XLOC_028787 NA coding downstream 529790 24501129 ~ 24643509 (-)
XLOC_028793 itih2 coding upstream 6360 25187912 ~ 25215968 (-)
XLOC_028794 NA coding upstream 63479 25245031 ~ 25247848 (-)
XLOC_028795 tmem110l coding upstream 70303 25251855 ~ 25271455 (-)
XLOC_028796 pfkfb3 coding upstream 290953 25472505 ~ 25485404 (-)
XLOC_028797 NA coding upstream 312904 25494456 ~ 25497067 (-)
XLOC_028786 NA non-coding downstream 797274 24253766 ~ 24376025 (-)
XLOC_028784 NA non-coding downstream 1299375 23768478 ~ 23873924 (-)
XLOC_028802 BX640593.1 non-coding upstream 659234 25840786 ~ 25840902 (-)
XLOC_028804 CT573048.1 non-coding upstream 824890 26006442 ~ 26007456 (-)
XLOC_028807 BX957270.1 non-coding upstream 945625 26127177 ~ 26147550 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000019_01740386_01743210 ATP5C1, ATP5C1.L, MGC82276 coding CI01000019 null 1740348 ~ 1744864 (+)
bowfin (Amia calva) AMCG00012905 atp5c1,LOC107748457,LOC107675979,LOC107555824 coding CM030125.1 CM030125.1 12906385 ~ 12916433 (+)