G985387 (LOC106586052)


Basic Information

Item Value
gene id G985387
gene name LOC106586052
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 46847703 ~ 46875441 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1121722
GCCCCTTGGGTGTGCTGGAGTGAGTGAGCGACGTGCATGTGAAAGCCTTCATTGTCACCCTGCAAGGGAACCTCAAATACAGTAAGGTGGAGTGGCGGtggtacagaggaagctagcaatgtggaaggctaggtatttgtcttttatgggcaaagtcctggtcctaaaggtggatgtgttgccgtctcttttgtatttggcgtacatctacccattgccggcttgtctgaggaggcctctagtgaggcttgtgtttcagttcatgtggagtggcaggtgcgagtgggtcgccagggcacgcatgctctgtcccatcggggagggaggtaggggggtaccacatttccccctcaagctggaagcaatttttgtttcttgttaacggagcttgctcatccagtgatacacccgtccggttacctcctgcgggtgttcttctcgtatcaggcgagaagcgtaatggtgtggtctaacacgggtcctcgggcggaacagctgccgtggcactttggtcatgcggccaagtggctgcgtgcgcaccctgaggttgaagttgcccgagtaggtttagatcacaggcacctgtacgaggaggtcagaaagGCAGGGAGTCCGGCGCCTGTAGTGGGCATCTCGAAAGTgatctgggagggagtgcaggcgcggattgtgacaacaggctcaaggtcctgaattggttgagcctccataagtgcttgccggtacgttccatcatgtaccgatatagtttggtgcaatcccccacctgtccaagatcctcttgtggcagggaggagactgtgcgccatgtcttttggaactgtgcctttgccggagtggtatgggctagggcacgggtgttgttaggtttggcaaggggggattttgtattgacgtGGGCCAGGTTAGCGAGAGGTGtactgagagcgagagggacggatagggacaggtttctgctctggcttctcatgagtctctttaaacgggggctgtgggaagccaggcagaacatggtgaagagagggagagattggggggtggaagggatagtgaggagggtggaaggagatttgagggggaggatgaagagggaggagaggaagtgggggcagcatgctgcccgggagaggtggaagggggatttagggctgggtgtcatttagatttgtaaggggatagattagggacggggagatagggaaaggtagtttgtaggatgacggggagggaagatgctcccctgaggttttgttTTGGGTTTTTGTTTAGTTAAATTAAAACACCATTATTGAAGTATGAATGAAAATTATGAGttgtaaagaatgaatggtatCGAATGTAATTAATTATTTtttctaaaaaaaataaaaaataaaaaaataggttgtttcggttttcacgttacgtttattgtttttgtaatgTTCGTGTTTATTcgtttattaaacatgtatcaaaatTACCATgcagcattttggtccgatccttgctacaccccctcttcagaggaggagatacaagaaaaccgtaacagaatcacccactacaacaggaccaagtggcgtggtgacaggcaggagcagcgaaatccggatttctggacatgggaggagatattggatggaaaaggaccct

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1121722 True 1635 TUCP 0.50 2 46847703 46875441

Neighbor

gene id symbol gene type direction distance location
LOC110535772 LOC106580096 coding upstream 57594 46711425 ~ 46790109 (+)
ankrd13a ankrd13a coding upstream 189318 46650029 ~ 46658385 (+)
LOC110535769 NA coding upstream 238033 46602293 ~ 46609670 (+)
LOC110535764 fam222a coding upstream 305712 46460291 ~ 46541991 (+)
mvk mvk coding upstream 486958 46335585 ~ 46360745 (+)
LOC110535777 slc28a3 coding downstream 30318 46905759 ~ 46916018 (+)
LOC110535778 LOC106580092 coding downstream 84569 46960010 ~ 47048633 (+)
LOC110535033 LOC106580091 coding downstream 241536 47116977 ~ 47126978 (+)
LOC110535780 LOC106580088 coding downstream 267339 47142780 ~ 47144670 (+)
LOC110535781 LOC106580086 coding downstream 271299 47128463 ~ 47188990 (+)
G985365 LOC106580094 non-coding upstream 13827 46828239 ~ 46833876 (+)
G985374 NA non-coding upstream 40079 46806783 ~ 46807624 (+)
G985310 NA non-coding upstream 53686 46791242 ~ 46794017 (+)
G985258 NA non-coding upstream 239147 46608233 ~ 46608556 (+)
G985256 LOC106613263 non-coding upstream 240566 46606796 ~ 46607137 (+)
G985400 NA non-coding downstream 43062 46918503 ~ 46918733 (+)
G985402 NA non-coding downstream 58088 46933529 ~ 46934588 (+)
G985405 NA non-coding downstream 74191 46949632 ~ 46949839 (+)
G985482 NA non-coding downstream 190511 47065952 ~ 47066275 (+)
G985257 NA other upstream 240022 46607392 ~ 46607681 (+)
G984422 pesc other upstream 737763 46107920 ~ 46109940 (+)
LOC110535735 fibcd1 other upstream 1434621 45189846 ~ 45413082 (+)
G982236 LOC106580137 other upstream 2561734 44280925 ~ 44285969 (+)
G981690 NA other upstream 3132406 43660374 ~ 43715297 (+)
G985401 NA other downstream 47498 46922939 ~ 46923827 (+)
G985597 NA other downstream 375871 47251312 ~ 47252236 (+)
G986461 NA other downstream 903581 47779022 ~ 47779304 (+)
G987548 NA other downstream 1793587 48669028 ~ 48678237 (+)
LOC110535809 LOC106580054 other downstream 1908287 48705729 ~ 48788213 (+)

Expression


Co-expression Network