G985401


Basic Information

Item Value
gene id G985401
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 46922939 ~ 46923827 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1121736
cgtggaaaggagctcgcgctctccgttgcccccctctccgcatcactaccatcttcctctgccggctcgggagctgagcctatgcagctgggaggtatccgcatctcgactaaggagagggaacggagaatcaccaaccgcctctgtctctattgcggttctgctggtcattttgtcacttcatgtccagtaaaagccagagctcatcagtaagcggagggctactggtgagcgctactactcctgtctctccttcaagatcctgcactaccttgtcggcccatctacgctggaccggttcgtcagcttcctgcagtgccttaatagactctggggcggagggctgttttatggacgagacctgggctcgggaacatgacattcctctcagacagttaagggagtccacggccttgttcgccctggatggtagtcctctccccaggattcagcgtgagacgctacctttaaccctcactgtttctggtaatcatagcgaaaccatttcttttttaatttttcgttcaccttttacacctgttgttttgggccatccctggctagtttgtcataatccttccattaattggtctagtaattctatcctctcctggaacgtctcttgtcatgtgaaatgtttaatgtctgctatccctcctgtttcctctgtctcttcttcacaggaggagcctggtgatttgacaggggtgccggaggaatatcacgatctgcgcacggtgttcagtcggtccagggccacctctcttcctccacaccggtcgtatgattgtagtattgatctccttccgggaaccactcccccccggggtagactatactctctgtcggctcccgaacgtaaggctctcgaggattatttgtctgtagc

Function

NR:

description
Retrotransposable element Tf2 protein type 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1121736 True 889 TUCP 0.52 1 46922939 46923827

Neighbor

gene id symbol gene type direction distance location
LOC110535777 slc28a3 coding upstream 6921 46905759 ~ 46916018 (+)
LOC110535772 LOC106580096 coding upstream 132830 46711425 ~ 46790109 (+)
ankrd13a ankrd13a coding upstream 264554 46650029 ~ 46658385 (+)
LOC110535769 NA coding upstream 313269 46602293 ~ 46609670 (+)
LOC110535764 fam222a coding upstream 380948 46460291 ~ 46541991 (+)
LOC110535778 LOC106580092 coding downstream 36183 46960010 ~ 47048633 (+)
LOC110535033 LOC106580091 coding downstream 193150 47116977 ~ 47126978 (+)
LOC110535780 LOC106580088 coding downstream 218953 47142780 ~ 47144670 (+)
LOC110535781 LOC106580086 coding downstream 222913 47128463 ~ 47188990 (+)
LOC110535784 LOC106580085 coding downstream 267769 47191596 ~ 47207168 (+)
G985400 NA non-coding upstream 4206 46918503 ~ 46918733 (+)
G985385 NA non-coding upstream 35435 46865815 ~ 46887504 (+)
G985366 NA non-coding upstream 36537 46837515 ~ 46886402 (+)
G985386 NA non-coding upstream 43916 46867990 ~ 46879023 (+)
G985365 LOC106580094 non-coding upstream 89063 46828239 ~ 46833876 (+)
G985402 NA non-coding downstream 9702 46933529 ~ 46934588 (+)
G985405 NA non-coding downstream 25805 46949632 ~ 46949839 (+)
G985482 NA non-coding downstream 142125 47065952 ~ 47066275 (+)
G985508 NA non-coding downstream 227397 47151224 ~ 47209482 (+)
G985387 LOC106586052 other upstream 47498 46847703 ~ 46875441 (+)
G985257 NA other upstream 315258 46607392 ~ 46607681 (+)
G984422 pesc other upstream 812999 46107920 ~ 46109940 (+)
LOC110535735 fibcd1 other upstream 1509857 45189846 ~ 45413082 (+)
G982236 LOC106580137 other upstream 2636970 44280925 ~ 44285969 (+)
G985597 NA other downstream 327485 47251312 ~ 47252236 (+)
G986461 NA other downstream 855195 47779022 ~ 47779304 (+)
G987548 NA other downstream 1745201 48669028 ~ 48678237 (+)
LOC110535809 LOC106580054 other downstream 1859901 48705729 ~ 48788213 (+)
G987751 NA other downstream 2022089 48945916 ~ 48946759 (+)

Expression


Co-expression Network