XLOC_028798 (rbm17)


Basic Information

Item Value
gene id XLOC_028798
gene name rbm17
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 25497104 ~ 25515591 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055805
CGTCATATGTTCGCGACGTCTCCATTGTAGCATGTTACGCTAACCAAGAGTGCATAACTTGTAGAGGATTTATTTTCGTGAAAGTGTTTTTAGTGGAAAGGAGGAGAAATGTCTTTATATGATGATTTGGGGGTCGCAACGAGCGACGCAAAAACAGAAGGATGGTCTAAAAACTTCAAACTGCTTCAGTCTCAACTGAAAGTGAAGAAAGCTGCACTGACACAAGCAAAGACCCAGAGGACGAGACAGTCCAATGTTCTTGCTCCAGTTATTGATCTGAAGAGGGGAAGTGGAGGGGATGACAGACAGATCTCTGATACTCCTCCGCACATTGCTGCAGGGATGAAGGACTCATCATCAGGAGGGTTTTCTTCAGGAGATGTGCTGATTCCCTTGGCTGATGAATATGATCCCATGTTTCCCAATGACTATGAGAAAGTGCTGAAGAGACACAGAGAGGAACGACAAAAACAGAGAGAACAAGAGCGACAGAAGGAGATTGAGGAGAGAGAGAAGAAACGTAAGGAGAGGCACGaaggaggaggtggtggtggaGCTCCAAGTGGATTCTCACGCTTTCCAACAGAAGGCGAATCAGATGAGGAGGAGGACTATGAGAGGGAAAAGAGAAAGAGGACTGCAGGTGGAGCTGCCATCGCCCCTCCAACATCACTGGTGGAGCGAGACTCATCATTTACATATGATGAAGACGGTCGGCAGAGGACCAAAGCTGCAATCCCTCCACCAGTGTTTGAGGACTCTGATAGACCTCGATCTCCTCCTGGACCAGCTAATTCATTCCTGGCCAACATGGGtGGAACAGTGGCTCATAAAATCATGCAGAAGTATGGTTTTCGGGAAGGACAGGGCCTGGGGAAACACGAGCAAGGCTTAAGCACAGCGCTTTCAGTGGAAAAAACCAGCAAACGTGGAGGGAAGATTATTATTGGAGACTCAACGGAAAAAACAACAGGACCAAGTCAGAATGTTGCTAATCCAGATGGCTCTAATTCAGATGCCTCAAAGAAAAACGAAACCAACCCTCTCACAGAGATCCTCAAATGTCCTACAAAGGTGGTGTTGCTACGGAACATGGTTGGAAGAGGAGAGGTGGATGAAGACCTGGAAGCTGAGACGAAAGAAGAGTGTGAAAAATATGGCAAAGTCGTTCGATGTGTCATTTTTGAGATCTCAGGCGTTACTGATGATGAAGCTGTCCGCATTTTCCTGGAGTTTGAGCGAGTTGAATCGGCCATTAAAGCTGTGGTGGATCTGAATGGACGGTATTTTGGAGGTCGTGTGGTGAAGGCCTGTTTTTATAACTTGGATAGGTTCCGTGTTTTAGACCTGGGAGATCAGGTGTAAGTAGGAGAGCTGAACAACCAGGAAACAGTAAACATGAGGAGAAGGTTGCTTGTCTTTCTGTATATAGCATGAGTAATTTTATACACACTTGTAAATCATCAGCTTATTTACCCATTTCCCTATGCGTTTTGTTATGAGGATCTACTTTGGTCTTTTGTGAATTTCttttagtctctctctctctcacgtcACTGTTAAAAATAACCTTTGTCCTTGTGAATAAGATGTGATGAAGAAGCTAGAATTAAAAGCCCTTTTTGGAGAATCATTTTTAAGATTGGTTTCATTTAAAAGGAAgattgtcattttatttgttaccTTTTAGATCTCTTTTTAATGTGCCgtgactacactacctgacaaaagtcttgtggcctgtccaagttttaggtac
>TCONS_00055806
ATGTCTTTATATGATGATTTGGGGGTCGCAACGAGCGACGCAAAAACAGAAGGATGGTCTAAAAACTTCAAACTGCTTCAGTCTCAACTGAAAGTGAAGAAAGCTGCACTGACACAAGCAAAGACCCAGAGGACGAGACAGTCCAATGTTCTTGCTCCAGTTATTGATCTGAAGAGGGGAAGTGGAGGGGATGACAGACAGATCTCTGATACTCCTCCGCACATTGCTGCAGGGATGAAGGACTCATCATCAGGAGGGTTTTCTTCAGGAGATGTGCTGATTCCCTTGGCTGATGAATATGATCCCATGTTTCCCAATGACTATGAGAAAGTGCTGAAGAGACACAGAGAGGAACGACAAAAACAGAGAGAACAAGAGCGACAGAAGGAGATTGAGGAGAGAGAGAAGAAACGTAAGGAGAGGCACGaaggaggaggtggtggtggaGCTCCAAGTGGATTCTCACGCTTTCCAACAGAAGGCGAATCAGATGAGGAGGAGGACTATGAGAGGGAAAAGAGAAAGAGGACTGCAGGTGGAGCTGCCATCGCCCCTCCAACATCACTGGTGGAGCGAGACTCATCATTTACATATGATGAAGACGGTCGGCAGAGGACCAAAGCTGCAATCCCTCCACCAGTGTTTGAGGACTCTGATAGACCTCGATCTCCTCCTGGACCAGCTAATTCATTCCTGGCCAACATGGGtGGAACAGTGGCTCATAAAATCATGCAGAAGTATGGTTTTCGGGAAGGACAGGGCCTGGGGAAACACGAGCAAGGCTTAAGCACAGCGCTTTCAGTGGAAAAAACCAGCAAACGTGGAGGGAAGATTATTATTGGAGACTCAACGGAAAAAACAACAGGACCAAGTCAGAATGTTGCTAATCCAGATGGCTCTAATTCAGATGCCTCAAAGAAAAACGAAACCAACCCTCTCACAGAGATCCTCAAATGTCCTACAAAGGTGGTGTTGCTACGGAACATGGTTGGAAGAGGAGAGGTGGATGAAGACCTGGAAGCTGAGACGAAAGAAGAGTGTGAAAAATATGGCAAAGTCGTTCGATGTGTCATTTTTGAGATCTCAGGCGTTACTGATGATGAAGCTGTCCGCATTTTCCTGGAGTTTGAGCGAGTTGAATCGGCCATTAAAGCTGTGGTGGATCTGAATGGACGGTATTTTGGAGGTCGTGTGGTGAAGGCCTGTTTTTATAACTTGGATAGGTTCCGTGTTTTAGACCTGGGAGATCAGGTGTAAGTAGGAGAGCTGAACAACC
>TCONS_00055807
TGAAAGGTGTGTATCTTATGTCAAATATTCAACTATTAAAGTGTATGCGCTGTTACAAGATGAGGCAGCAACCATTTGTTTATTAAAAGCATGTTTTTAGTGGAAAGGAGGAGAAATGTCTTTATATGATGATTTGGGGGTCGCAACGAGCGACGCAAAAACAGAAGGATGGTCTAAAAACTTCAAACTGCTTCAGTCTCAACTGAAAGTGAAGAAAGCTGCACTGACACAAGCAAAGACCCAGAGGACGAGACAGTCCAATGTTCTTGCTCCAGTTATTGATCTGAAGAGGGGAAGTGGAGGGGATGACAGACAGATCTCTGATACTCCTCCGCACATTGCTGCAGGGATGAAGGACTCATCATCAGGAGGGTTTTCTTCAGGAGATGTGCTGATTCCCTTGGCTGATGAATATGATCCCATGTTTCCCAATGACTATGAGAAAGTGCTGAAGAGACACAGAGAGGAACGACAAAAACAGAGAGAACAAGAGCGACAGAAGGAGATTGAGGAGAGAGAGAAGAAACGTAAGGAGAGGCACGaaggaggaggtggtggtggaGCTCCAAGTGGATTCTCACGCTTTCCAACAGAAGGCGAATCAGATGAGGAGGAGGACTATGAGAGGGAAAAGAGAAAGAGGA

Function

symbol description
rbm17 Predicted to enable RNA binding activity. Predicted to be involved in alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within regulation of RNA splicing. Predicted to be located in nucleoplasm. Predicted to be part of spliceosomal complex. Orthologous to human RBM17 (RNA binding motif protein 17).

GO:

id name namespace
GO:0000380 alternative mRNA splicing, via spliceosome biological_process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0006281 DNA repair biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-040426-817 Predicted to enable RNA binding activity. Predicted to be involved in alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within regulation of RNA splicing. Predicted to be located in nucleoplasm. Predicted to be part of spliceosomal complex. Orthologous to human RBM17 (RNA binding motif protein 17).

Ensembl:

ensembl_id ENSDARG00000031346

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055805 False 1759 mRNA 0.44 13 25497104 25515591
TCONS_00055806 False 1276 mRNA 0.47 12 25497479 25515154
TCONS_00055807 True 644 mRNA 0.45 5 25510511 25515513

Neighbor

gene id symbol gene type direction distance location
XLOC_028797 NA coding downstream 37 25494456 ~ 25497067 (-)
XLOC_028796 pfkfb3 coding downstream 11700 25472505 ~ 25485404 (-)
XLOC_028795 tmem110l coding downstream 225649 25251855 ~ 25271455 (-)
XLOC_028794 NA coding downstream 249256 25245031 ~ 25247848 (-)
XLOC_028793 itih2 coding downstream 281136 25187912 ~ 25215968 (-)
XLOC_028799 tmcc3 coding upstream 239134 25754725 ~ 25812329 (-)
XLOC_028800 ndufa12 coding upstream 314250 25829841 ~ 25836684 (-)
XLOC_028801 nr2c1 coding upstream 322754 25838345 ~ 25859305 (-)
XLOC_028802 BX640593.1 coding upstream 325195 25840786 ~ 25840902 (-)
XLOC_028803 fgd6 coding upstream 343854 25859445 ~ 25911609 (-)
XLOC_028789 NA non-coding downstream 448097 24833526 ~ 25049007 (-)
XLOC_028788 NA non-coding downstream 706363 24726095 ~ 24790741 (-)
XLOC_028787 NA non-coding downstream 853595 24501129 ~ 24643509 (-)
XLOC_028804 CT573048.1 non-coding upstream 490851 26006442 ~ 26007456 (-)
XLOC_028807 BX957270.1 non-coding upstream 611586 26127177 ~ 26147550 (-)
XLOC_028808 NA non-coding upstream 735283 26250874 ~ 26252121 (-)
XLOC_028811 CU137645.1 non-coding upstream 891555 26407146 ~ 26407263 (-)

Expression


Co-expression Network