XLOC_028799 (tmcc3)


Basic Information

Item Value
gene id XLOC_028799
gene name tmcc3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 25754725 ~ 25812329 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055808
GCGGGTcgagtgactgactgactgaatgcgTGTGTGTTGAACCGTAGATCACAAAGAGGAATCCGCAGACCGAAAGCGCGCGGCGGCGCCCCGCAATCCGCCACACAATGTAGCAGAACCGATCCGCCGGACCGCACACGAGACGAGAGTCCAGTCTGACCGGACCGGAGTCAACTGAACTATGCCCAGCGCCGAGAGAACTTTACCCGAACTCGAGAGGAACTCTTTCTTACACTGCGACATGGCGGAGAGAGGTGTTGATGTGAACACCCTCAGCATCCCTGTGCCCATGCGAAGAGGGGGCTCAGAGACGTGCTTAGACCTAGATTCAGATCTAACAGTACGGGACGGCCCGCGATCACGATTTGGCCTGGACAGCCTCCAACAAAAGATCCTCAAAGTAAAAGAACAGCTGCGAATTGAGCAAAACCTACAAGATGAGAACGTGGCTGAATATCTTAAACTCATCAACTGTGCAGACAAACAGCAGAGTGGCCGTATTAAACAAGTGTTCGAGAAGAAGAACCAAAAAACTGCCCACAACATCTCCCAACTCCAGAAAAAACTTGAGCAGTATCAGCGCAAGATGAAAGAGTCAGACATCTCCAACGGCACCAAACACGCAACGCCAAAAGACAAAGACAACGACAACCTCAAAGAAACTGTGGTCACCGGAAGCGGACGACATCCACATTTGGACAAAGTCAAAACCATCGGCCCTGGAGTTTCTTTATCTCCGCCGTTCTTCTTTAGCAAGCCCAGGGAAATCGCAAACCTTATTCGCAACAAATTCGGCAGCGCTGACAACATCGCCCACCTGAAAAGCTCAATGGAGACTGGGTCTGGGTTGCAGGCGGAAGCGGGAGCCCGGATTTTAAGCGGCAGCGCCACATTGACCCCGAAACCTAAATATCCGAGTGATGACGAGTGTTCCACCGAGACGTCAGTTTCTGTGGAAAGTAATGGGCAGGTGACTGGATCGGGCACCACCGGGCAACACAGCGGATCTGCAAGAGAAGCTGAAGTCAATAGCCGACTGCTGGAGGCCTGTGAGGAGATCCGGGAGTTGAGGGAAGCTCAGAGTCTCCTGGCTGACGACATCGAGACACTCAAGAACCAGTTTAAATGTGAAGTGGAGAACATCACGCAGACACTACAAGAGGAGCGATACAGgTGTGAGCATCTAGAAGACCAGCTGAACGACCTGACAGAGCTCCATCAGAATGAAACCGCAAACCTCAAACAGGAGCTCGCGAGCATCGAGGAGAAGATGGCCTATCAGGCTTATGAACGAGCTCGAGATATACAGGACGCTTTGGAAGTCTGTCAGACGCGTGTCAGTAAACTAGAGCtccagcaacagcagcagcaggtCTTGCAGTTGGAAGGCACCGACGCCAAAGTCCTGCTGGGAAAATGCATCAACATCATGCTGGCCATCGTCACCGTGATCCTGGTTTGCGTCTCCACCGCTGCTAAATTCTCCGCTCCGTTGATGCGAAGTCGCCTACATGTGTTCGGGACactagtatgtgtgtgtttactgttgTATAGCTGGAGCAACTGGGAGCATCTGCAGTGCGCAATAGAGAGAATGCTGCTTCCCAGATGAGGGTCGGGAAACATGGCTTTGTGTGGTGAATTTCTTCTGATTAAGTGCTCCTCAATGGGATTTTCCCTTCACAATGTGACTGTCCCAAGACAATGGCTTTAATTGACTTTTTTATCtgtctattttgtttgtttttttgtatcgGGAAGAGTTGGTATTGATGATGTACTGTAGCAGAAACGGGTCCATCTAGGTGACTGTATTGTTTAgtaatgttttgtttgtcatCTGTGTCTTAAAAGAAAAGGTTCACTACCTTTCTTATGTTTTATGTGCTTTCTTAGGTGGTGATAGTGTATTTGGGTTCACAAAAACTTAATTTGATCAAAAAATGCTTAAGTTAAACTATTTAGGGACCATATTTTTCGGTATTCTGATTGTCACAGATTGAATAATTCTAATATTTCTTCATTCTTGGGTTTTAATACTTTTACATGAAATGATGATAATTGATTTTTAATATAGATGTTTTTTTGGATCATtcaaatcagtgtttctcaaccacgttcctggagaaccaccagccctgcacattttccatgttttcttaaccaaacacacctgattcagatcatcagctcattagcagagactgaaagacctgtgatgggtgtgacaaaggagacatttAAAACATGCACTGCTGggggtcctccaggaacatggttgagaaacactgttttaattgattaaaaaaatagttttttctttaaTTGCAATAATAAGACTGTTGTTGAAATGCCGCGGAATTTAAATGAAAGGAATTCAAACTTTTTTCTCTCACAATTTCAAGtttatatctttttttgttgttgagaatTTTGAGTTGATATATTTgagtttataaatataaatgttcaaaATATAAACTCTAAATTCTGATTTCAGAATTTAGGTATATaattatgtatttgttttcaaGTTTCTTCGTTATTATACATTGAAATTGCAGATACTTTAAAAAGAAGCTGGGATGTAAACTTGAAGTTGGCTTGATTTTCTTTATgcattttgtgttgttgttgatattattaaggGTGAATTACAAACCGGATGTTTTTGACAACGACATTTTCAAgcattatttgtattattgaGATGGCCTGAAGTTCTTTTCACCTGCACTTTAAACATGTCGCCCCGGTTTgagattcagtttttttttctttacttctaACAGCTTTACTCTGTACTGACCACAAACACTTAGTCTTTTTAACTCTTGTATAGTAGAAATGCCTTGGGGGTGAAACTAGAAACTAGAACATGAGAAGGAACAAATATCTCTGTCAAGTTTAAGTAACATTCTGAACTGTTCTTCGTCAAAGTTAGactatttttatacattattaattTGCATTGTTGAATGTATGTCTTAATGATTCCAACATCTGCAAACTGATTTAAGGAATTTAAACACTGTTTCTCTGAGTGTGTGCCTGCCTGTGGTCTTGACTGAAGATTGTAGAAGCCAAAATCTGAATTTACCCATGAACCTGTGTAAGAAGAGGCCTTTATCTTTAAGCATGGGTTTTTAAGTGATTTCATTTGTTTTACACACGCTTCAGTGTCACTGGTAGGAAACTTGTCTAGTCTTTAATTGTTGTCTAAACCTGCAAATAAATGGCCTCGTTTTTCTCTA
>TCONS_00055809
AATAAAGAGGAAGTGGAGAGGATTATGGAGGAGGAAgagaaggaaaataaaaaaagaagctgAGAGGATGATGCGAATCAGGAGAAAAATGTAAAAGAGGAGCAATAACACTCTCCATTTCAGCAGAACAAGGCACTCATGaTGATGAGCAGAAGTTTATGGAGAAGAGTGACAGAATGTAAGAAGAGTgtgaaggaggaagaggagaaggAAATGAAAGAAGACGAGAAGGGGGAAGAGAAGTAAAAAGATgGCGGAGAGAGGTGTTGATGTGAACACCCTCAGCATCCCTGTGCCCATGCGAAGAGGGGGCTCAGAGACGTGCTTAGACCTAGATTCAGATCTAACAGTACGGGACGGCCCGCGATCACGATTTGGCCTGGACAGCCTCCAACAAAAGATCCTCAAAGTAAAAGAACAGCTGCGAATTGAGCAAAACCTACAAGATGAGAACGTGGCTGAATATCTTAAACTCATCAACTGTGCAGACAAACAGCAGAGTGGCCGTATTAAACAAGTGTTCGAGAAGAAGAACCA

Function

symbol description
tmcc3 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system. Orthologous to human TMCC3 (transmembrane and coiled-coil domain family 3).

GO:

id name namespace
GO:0012505 endomembrane system cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1811 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system. Orthologous to human TMCC3 (transmembrane and coiled-coil domain family 3).

Ensembl:

ensembl_id ENSDARG00000045525

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055808 False 3254 mRNA 0.43 4 25754725 25796848
TCONS_00055809 True 537 mRNA 0.45 3 25759613 25812329

Neighbor

gene id symbol gene type direction distance location
XLOC_028798 rbm17 coding downstream 239134 25497104 ~ 25515591 (-)
XLOC_028797 NA coding downstream 257658 25494456 ~ 25497067 (-)
XLOC_028796 pfkfb3 coding downstream 269321 25472505 ~ 25485404 (-)
XLOC_028795 tmem110l coding downstream 483270 25251855 ~ 25271455 (-)
XLOC_028794 NA coding downstream 506877 25245031 ~ 25247848 (-)
XLOC_028800 ndufa12 coding upstream 17512 25829841 ~ 25836684 (-)
XLOC_028801 nr2c1 coding upstream 26016 25838345 ~ 25859305 (-)
XLOC_028802 BX640593.1 coding upstream 28457 25840786 ~ 25840902 (-)
XLOC_028803 fgd6 coding upstream 47116 25859445 ~ 25911609 (-)
XLOC_028804 CT573048.1 coding upstream 194113 26006442 ~ 26007456 (-)
XLOC_028789 NA non-coding downstream 705718 24833526 ~ 25049007 (-)
XLOC_028788 NA non-coding downstream 963984 24726095 ~ 24790741 (-)
XLOC_028787 NA non-coding downstream 1111216 24501129 ~ 24643509 (-)
XLOC_028807 BX957270.1 non-coding upstream 314848 26127177 ~ 26147550 (-)
XLOC_028808 NA non-coding upstream 438545 26250874 ~ 26252121 (-)
XLOC_028811 CU137645.1 non-coding upstream 594817 26407146 ~ 26407263 (-)

Expression


Co-expression Network