XLOC_028805 (usp44)


Basic Information

Item Value
gene id XLOC_028805
gene name usp44
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 26021749 ~ 26035770 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055818
CACAGAAGTAACCAGTGCTTGACGAAAAATCAGATTAACCATCATGCCTTGGGAGGAGTTGGTTTCACTGCTGGCTGCCGTCACAATAGTGATGTGAGGAGGGCAGTGACCGACTGTGATGGACAGGTGTAAGCACGTGGGTCGCTTAAGGCTTGCGCAGGACCACTCGATCCTGAACCCGCAGAAATGGCACTGTGTGGACTGCAACACCACCGAGTCGGTGTGGGCATGTCTTAGCTGTTCTCATGTAGCATGTGGACGCTACATAGAGGAACATGCGCTTCAGCACTTTAAGGAGCAGCACCACCCTTTGGCCCTGGAGGTGAATGAGTTGTATGTgtactgctacttgtgtgatgaCTACGTGCTGAATGATAATGCGACAGGTGACTTAAAGCTGTTGCGAAGCACGTTAAGTGCTATTAAGAGCCAGTGCTATGAAGTCACCACACGTAGTGGCCGTACCCTTCGCTCATCCTCTGCTAATGGAGATCAGCTATCACCTAGCACGCAGGAGCTGCAGTTGCGGGATGAGGACCGCATGTTCACTGCATTGTGGCACCGCCGGCGTGCTCTAATCGGTCGCCTTTTTCGCCTGTGGTTCGCACAAACTGAACGGGGAAAGAAGCGTTTGGAGGAGGAACGGCaacaggaggaagaggaggagaggaagcgTGAAGCACGGGAAAGAAGACGGCAACTCAAACGGCAGCTCAAGGAAGAGTTGGAAAGTGCACCTCCTAGGAAGAGCCATCGCATTCGACGACAGAGCTTGAAGGCAACTTCTGTGAAACCTGCAAGAGCACCAGCCAAAAGCACTAAATCTGTGAGGCGCAGGTCTGCTCCTGCTCGCGTCTCCACTCCTACTCCACGAACTCCTAGAGAGAGAACTCCTCAACAGAGGCCCCGTCCACAAGCCAAGGCCAAACGGCCACAGGCTCCACCTTCTAAAACAGGCGATTCGCCCGTCAAACGGCGACCTACTGTAACTCCAGGAGTGACAGGTTTGCGCAACCTTGGCAATACTTGCTACATGAACTCGATATTGCAGGTTCTGAGTCACTTGCATGTATTCCGGGAGTGCTTTTTGAGACTGGATCTGAACCAAGCGCTGGAACTGCTAGCCTCTGCGGTCAGCCGCAAGTTAGGACTCTCTGCTCAGCGCGTGATCCAGCCCAAAGGCCTTAATCAGGGGTCCGGACTCAGTGGAGGAGCCTCCCGTTCACGCAACATGGAGCTCATACAACCCAAGGAGCCCAGCTCCAAACATATCTCGCTTTGTCACGAATTACACACACTCTTTCAGGTGATGTGGTCAGGCAAGTGGGCTCTGGTTTCCCCATTTGCAATGCTGCATTCTGTGTGGCAGCTGATTCCAGCGTTCCGAGGTTATGCACAGCAGGATGCGCAGGAATTTCTTTGTGAACTTTTAGATAAAGTCCAGCATGAGCTGGAACGGACCAGAACATTAACACCTGCCACTGTTCCGGCCAACCAGAGACGCCTTATCAAACAGGTGCTCAGTGTGGTCAATACCATCTTTCATGGCCAGCTCCTCAGTCAGgTGAGGTGTTTAGCATGCGATCATCGCTCAAACACAATTGAGCCCTTCTGGGATCTTTCTCTGGAATTCCCTGAACGATACCACAGCAACAGTAAGGATGCTGCACAAGTTCCTTGTGGCTTGACAGAGATGCTGGCTAAGTTTACAGAGACTGAGGCATTGGAAGGAGCCATATATGCTTGCGACTACTGCAACAACAAACGACGGCGATTCTGTTCGAAGCAGGTGGTCTTGACTGAAGCTCAGAAACAGCTAATGGTTCACAAACTGCCTCATGTTCTCAGATTGCACCTCAAACGATTCAGGTGGTCCGGTCGAAACCACAGGGAGAAGATCGGTGTTCATGTTCAGTTTGAGCAGGAGCTGAACATGGAGCCGTACTGCTGCAAAGACTCCGGCAACTTACCCCATCCTCAACACTTCCTCTACCAACTTTCTGCTGTCGTCATGCATCACGGGAAGGGATTCGGATCAGGCCATTACACTGCCTTTTGTTATAATACTGAAGGAGGGTTTTGGGTGCACTGTAATGACTCTAAACTGAGTGTCTGCGCGGTGGAGGAAGTGTGTAAGGCCCAGGCCTACATTCTCTTTTACACGCAAAGAAACGCTCAGGACAAAAGCAAAGAGAGTGACCTCTGACCCTTCAGATGTAGAGACTGTCCGTTTGTACATTCTGTTCATATAGTTTCGGGACGGTTAGTATGTCTCCTTTTTCTAGTGTACAGCAAATGTGGAAGGGGGTATGTTTTTGTCACACGCACACTTATGCCTTACAGTTTTACAGATTTCAGCATCCTTGCAGTGATTGTAGcaattcatttgtgtgtgtgtatgtgtgtgtgtgtgcaaagagAGTGAATTTGGTCCAAGCCTGAGGCATTATTGGTCTCACTAGTGTCCGTGTTTATCGTCTGCAAACCAAAGTTGAGTTGTGAATGTGTACCGAGTCTGAAACATTCGTAGCGTCAGTATAAAAAGAGGTTTTCTGTCTTCATATCTCAAGTGTTTTATTATCTTCAgacaaattatttgtttttgataaGTGCCCTGCCAAGTCAGATCAGTTTTAAGATGTTAATAACTTTTAAACGAGGCGCGATTCAGGAATTTTTCTGTCACCTTCTCAGAATGTAGTTTTTATACCTGGTATTTGGGTAGAcaacttttttttcccattttacaGGAAAATGTCAAAGATTTTTtcaccagcaaaaaaaaaatagacaatgtATGCTGTTATATTCTCCCTTTGTCTGTTTGTGGCGTGTAGACTCTCTTCTGTAGTTCGTACACTTATTTTAGATGTACGTGTTTGTTCGACTCTCATACACTCCTGCTCAAATCTCCTGTTTCCACATCTCGTTGGCTGTTCAAATCCATTTTCCTCCTCCGCTTTTGAGCAGGTATAGATGTAAAACTATGCAAATTGTTACCTCAATTCATAGAGAAATTTACCTCAATAAAAGGagaatatttttgcatttttct
>TCONS_00055819
ATGGACAGGTGTAAGCACGTGGGTCGCTTAAGGCTTGCGCAGGACCACTCGATCCTGAACCCGCAGAAATGGCACTGTGTGGACTGCAACACCACCGAGTCGGTGTGGGCATGTCTTAGCTGTTCTCATGTAGCATGTGGACGCTACATAGAGGAACATGCGCTTCAGCACTTTAAGGAGCAGCACCACCCTTTGGCCCTGGAGGTGAATGAGTTGTATGTgtactgctacttgtgtgatgaCTACGTGCTGAATGATAATGCGACAGGTGACTTAAAGCTGTTGCGAAGCACGTTAAGTGCTATTAAGAGCCAGTGCTATGAAGTCACCACACGTAGTGGCCGTACCCTTCGCTCATCCTCTGCTAATGGAGATCAGCTATCACCTAGCACGCAGGAGCTGCAGTTGCGGGATGAGGACCGCATGTTCACTGCATTGTGGCACCGCCGGCGTGCTCTAATCGGTCGCCTTTTTCGCCTGTGGTTCGCACAAACTGAACGGGGAAAGAAGCGTTTGGAGGAGGAACGGCaacaggaggaagaggaggagaggaagcgTGAAGCACGGGAAAGAAGACGGCAACTCAAACGGCAGCTCAAGGAAGAGTTGGAAAGTGCACCTCCTAGGAAGAGCCATCGCATTCGACGACAGAGCTTGAAGGCAACTTCTGTGAAACCTGCAAGAGCACCAGCCAAAAGCACTAAATCTGTGAGGCGCAGGTCTGCTCCTGCTCGCGTCTCCACTCCTACTCCACGAACTCCTAGAGAGAGAACTCCTCAACAGAGGCCCCGTCCACAAGCCAAGGCCAAACGGCCACAGGCTCCACCTTCTAAAACAGGCGATTCGCCCGTCAAACGGCGACCTACTGTAACTCCAGGAGTGACAGGTTTGCGCAACCTTGGCAATACTTGCTACATGAACTCGATATTGCAGGTTCTGAGTCACTTGCATGTATTCCGGGAGTGCTTTTTGAGACTGGATCTGAACCAAGCGCTGGAACTGCTAGCCTCTGCGGTCAGCCGCAAGTTAGGACTCTCTGCTCAGCGCGTGATCCAGCCCAAAGGCCTTAATCAGGGGTCCGGACTCAGTGGAGGAGCCTCCCGTTCACGCAACATGGAGCTCATACAACCCAAGGAGCCCAGCTCCAAACATATCTCGCTTTGTCACGAATTACACACACTCTTTCAGGTGATGTGGTCAGGCAAGTGGGCTCTGGTTTCCCCATTTGCAATGCTGCATTCTGTGTGGCAGCTGATTCCAGCGTTCCGAGGTTATGCACAGCAGGATGCGCAGGAATTTCTTTGTGAACTTTTAGATAAAGTCCAGCATGAGCTGGAACGGACCAGAACATTAACACCTGCCACTGTTCCGGCCAACCAGAGACGCCTTATCAAACAGGTGCTCAGTGTGGTCAATACCATCTTTCATGGCCAGCTCCTCAGTCAGgTGAGGTGTTTAGCATGCGATCATCGCTCAAACACAATTGAGCCCTTCTGGGATCTTTCTCTGGAATTCCCTGAACGATACCACAGCAACAGTAAGGATGCTGCACAAGTTCCTTGTGGCTTGACAGAGATGCTGGCTAAGTTTACAGAGACTGAGGCATTGGAAGGAGCCATATATGCTTGCGACTACTGCAACAACAAACGACGGCGATTCTGTTCGAAGCAGGTGGTCTTGACTGAAGCTCAGAAACAGCTAATGGTTCACAAACTGCCTCATGTTCTCAGATTGCACCTCAAACGATTCAGGTGGTCCGGTCGAAACCACAGGGAGAAGATCGGTGTTCATGTTCAGTTTGAGCAGGAGCTGAACATGGAGCCGTACTGCTGCAAAGACTCCGGCAACTTACCCCATCCTCAACACTTCCTCTACCAACTTTCTGCTGTCGTCATGCATCACGGGAAGGGATTCGGATCAGGCCATTACACTGCCTTTTGTTATAATACTGAAGGAGGGTTTTGGGTGCACTGTAATGACTCTAAACTGAGTGTCTGCGCGGTGGAGGAAGTGTGTAAGGCCCAGGCCTACATTCTCTTTTACACGCAAAGAAACGCTCAGGACAAAAGCAAAGAGAGTGACCTCTGACCC

Function

symbol description
usp44 Predicted to enable thiol-dependent deubiquitinase. Acts upstream of or within central nervous system morphogenesis and cranial skeletal system development. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Orthologous to human USP44 (ubiquitin specific peptidase 44).

GO:

id name namespace
GO:0021551 central nervous system morphogenesis biological_process
GO:0007049 cell cycle biological_process
GO:0016579 protein deubiquitination biological_process
GO:0051301 cell division biological_process
GO:0006508 proteolysis biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:1904888 cranial skeletal system development biological_process
GO:1904667 negative regulation of ubiquitin protein ligase activity biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-774 Predicted to enable thiol-dependent deubiquitinase. Acts upstream of or within central nervous system morphogenesis and cranial skeletal system development. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Orthologous to human USP44 (ubiquitin specific peptidase 44).

Ensembl:

ensembl_id ENSDARG00000089861

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055818 False 3055 mRNA 0.48 7 26021749 26035770
TCONS_00055819 True 2091 mRNA 0.52 6 26022595 26032741

Neighbor

gene id symbol gene type direction distance location
XLOC_028804 CT573048.1 coding downstream 14293 26006442 ~ 26007456 (-)
XLOC_028803 fgd6 coding downstream 110140 25859445 ~ 25911609 (-)
XLOC_028801 nr2c1 coding downstream 162444 25838345 ~ 25859305 (-)
XLOC_028802 BX640593.1 coding downstream 180847 25840786 ~ 25840902 (-)
XLOC_028800 ndufa12 coding downstream 185065 25829841 ~ 25836684 (-)
XLOC_028806 si:ch211-244b2.3 coding upstream 46760 26082530 ~ 26107841 (-)
XLOC_028807 BX957270.1 coding upstream 91407 26127177 ~ 26147550 (-)
XLOC_028808 NA coding upstream 215104 26250874 ~ 26252121 (-)
XLOC_028809 st8sia1 coding upstream 267843 26303613 ~ 26322836 (-)
XLOC_028810 b4galnt3a coding upstream 355081 26390851 ~ 26413391 (-)
XLOC_028797 NA non-coding downstream 524682 25494456 ~ 25497067 (-)
XLOC_028794 NA non-coding downstream 773901 25245031 ~ 25247848 (-)
XLOC_028789 NA non-coding downstream 972742 24833526 ~ 25049007 (-)
XLOC_028811 CU137645.1 non-coding upstream 371376 26407146 ~ 26407263 (-)
XLOC_028812 NA non-coding upstream 381737 26417507 ~ 26422227 (-)
XLOC_028813 NA non-coding upstream 716578 26752348 ~ 26765810 (-)

Expression


Co-expression Network