XLOC_028806 (si:ch211-244b2.3)


Basic Information

Item Value
gene id XLOC_028806
gene name si:ch211-244b2.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 26082530 ~ 26107841 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055820
AATGGGGGAAAACTAAACACGTATCACTGTCAACAACAGATGTTTAAATACCACCACAGCCCTGCCTTCATGAGCCAGAAAAGAAAGCGAAACTGATTAGCGCTAGCCTACAGAACatgaaaatatgtttatttgacaaGCGTTTTTAATCTGGTATCGACGTATTCTAGGAACTATGTTTGGTGTATTTAGAGAAGTTCTGAAATCTCTATGACCTTAAAGATCTCTGAATCACCAAATGATCCGCGCTATGCTTTAGGTACGCTTTAATAGACAACATTGTTATCTAAGAACATGGCTACAAGTAATTACTATGAGTGGCAGCTGTTTAATGGAAATCAGTGGGTTTATATCAATAATGATTTTATCATTGAGACCCATTACTGTCAGCCAGGAGCCAGTGGCATCAGGATCAACCTCAATACGGGGGCTGTTTACATTGACTTTGACGAGATGACAGCCGACGGACCTGATGATAATCTTGCTATACGGCGTAACACACTCCTGTCCCAAAACCAGAAGCAAGAGGTCGGCTGGTACTACAAAGATAACCATCGCTGGTGTGAGTATGGATCTCAGGGATGGGGTGGAAGAACATCTTCGATTGGCAGTGATTTTATAGAGCAGCACTTTAACAGCAACCCAAGCGGCTCAGTTCAGTTTACTGCAGGAAACATGACTTACAGTGTGGACTTTAATGcCATGACTCAAACCAATCTGTCCACACACTTGACGAGGAAAGTGAGACGACGGCCAAAATTCAACAAGATCGTAGCTATCAACAACAGTTTTCTAAACAGTTCCCCAACTCTGGCATCTCCTTCAACAAACCCATCAAACTCCTCCTCTCACTTCATCTGGGAGTTTATGGGGGATGAGGGCATTTGGACTGAGTACCAGAAACCAGCATGTTCGCTGGACAGTGCAGAAATCGAGAGGTTGTATCAGCTCAACCCTCAGTGCCAAGTTTCCTTCACTGCCAGAAGATTCTCTTACACACTTTACTTTGGCGGAATGTATCAAGTAAACGATAGACTTGGTACAAGAAGAACAGTCAGAAGGATCGCcagtggaagccagcagacaaACAAtgcattgtcACAAGCTCGCTGGCAGTTTAAAGACATGGATGGCAAATGGAAGGATTATGTGAGAGGTGGATCTCGAGGAAAGTGCAGTGTGTCAAGTCAAGATATTGAAGCTCAGTATCAGCAAGACCCCACTGCCATCATGAGCTTCAGTGCAGGCAGATTCAACTATGAGCTCGACTTCTCAGCCATGACTCAGACCAACCTGAGGACTAACACGAGGAGAGCCGTACAACGCCTTCAGCAATAGGACTGTTTACTTTTACTGTAGCAGTGTATGAATAATCTCAGGATGCCGGTTTATGCTATGTTTGCTGGCCATGACTAATATATGTTgatatgatgttttttttcataGAAATTATGTAGTTTTTCAATGCTAACTTGTGTCACATGATTTATCAACTGCCATAAATTCATGATCATTGAATGTACtatttgttttcagttttcaGCTTTTCTTTTCGGTGCATTTACTGTGATTAGAAAACAAAATGATATAATGTgtggtttttcttttttctttgttaacTGCCAATTAAAATTATGaggaaaattttattaaaattttatttagagAAGTCTGTTTACATTATTTATGCTAATCCCTAATGTTCAAAGGGTTCTGACATGTTGTTGGTCAATAAATTTCCCTCGACTTTTCCATGACTTCAATTCTGATTAGAATTActgattttctttctctattaAACTGACATTACTCTTCTAATTTATATTCGCATTTGTCTTCGCAGTCATAATTACATTGTAAGCTTTGTTTCTATGTTTCTGTATATGTaacaattttttataaaatgtattaaaaccaTTTTCTTCATACTACAA
>TCONS_00055821
CGCAACAGTAAAATGGGGGAAAACTAAACACGTATCACTGTCAACAACAGATGTTTAAATACCACCACAGCCCTGCCTTCATGAGCCAGAAAAGAAAGCGAAACTGATTAGCGCTAGCCTACAGAACatgaaaatatgtttatttgacaaGCGTTTTTAATCTGGTATCGACGTATTCTAGGAACTATGTTTGGTGTATTTAGAGAAGTTCTGAAATCTCTATGACCTTAAAGATCTCTGAATCACCAAATGATCCGCGCTATGCTTTAGGTACGCTTTAATAGACAACATTGTTATCTAAGAACATGGCTACAAGTAATTACTATGAGTGGCAGCTGTTTAATGGAAATCAGTGGGTTTATATCAATAATGATTTTATCATTGAGACCCATTACTGTCAGCCAGGAGCCAGTGGCATCAGGATCAACCTCAATACGGGGGCTGTTTACATTGACTTTGACGAGATGACAGCCGACGGACCTGATGATAATCTTGCTATACGGCGTAACACACTCCTGTCCCAAAACCAGAAGCAAGAGGTCGGCTGGTACTACAAAGATAACCATCGCTGGTGGATGGGGTGGAAGAACATCTTCGATTGGCAGTGATTTTATAGAGCAGCACTTTAACAGCAACCCAAGCGGCTCAGTTCAGTTTACTGCAGGAAACATGACTTACAGTGTGGACTTTAATGcCATGACTCAAACCAATCTGTCCACACACTTGACGAGGAAAGTGAGACGACGGCCAAAATTCAACAAGATCGTAGCTATCAACAACAGTTTTCTAAACAGTTCCCCAACTCTGGCATCTCCTTCAACAAACCCATCAAACTCCTCCTCTCACTTCATCTGGGAGTTTATGGGGGATGAGGGCATTTGGACTGAGTACCAGAAACCAGCATGTTCGCTGGACAGTGCAGAAATCGAGAGGTTGTATCAGCTCAACCCTCAGTGCCAAGTTTCCTTCACTGCCAGAAGATTCTCTTACACACTTTACTTTGGCGGAATGTATCAAGTAAACGATAGACTTGGTACAAGAAGAACAGTCAGAAGGATCGCcagtggaagccagcagacaaACAAtgcattgtcACAAGCTCGCTGGCAGTTTAAAGACATGGATGGCAAATGGAAGGATTATGTGAGAGGTGGATCTCGAGGAAAGTGCAGTGTGTCAAGTCAAGATATTGAAGCTCAGTATCAGCAAGACCCCACTGCCATCATGAGCTTCAGTGCAGGCAGATTCAACTATGAGCTCGACTTCTCAGCCATGACTCAGACCAACCTGAGGACTAACACGAGGAGAGCCGTACAACGCCTTCAGCAATAGGACTGTTTACTTTTACTGTAGCAGTGTATGAATAATCTCAGGATGCCGGTTTATGCTATGTTTGCTGGCCATGACTAATATATGTTgatatgatgttttttttcataGAAATTATGTAGTTTTTCAATGCTAACTTGTGTCACATGATTTATCAACTGCCATAAATTCATGATCATTGAATGT
>TCONS_00055822
ATGAATATGGCTTCGAACTACCAAGAGGATTCCGCTGAAGGCGGCGATCAGCTTTCTGGTGAGAGTGGCTCAGATTTCAGTGACACTGACACAGACTCTGATGCATccactgattctgattctgactCTGAAGATGCTCCACAAACCCCTAACAAGCGTAATGTTTGCAAGTATTACAACCGTGGTCAGTGCCGTTACGGGGAAAAGTGCAGGGACGAGCATGTCTGCAGCAACTTTCTGAACAACTCATGCAAATATGGCACTGGATGTCGACTCAACCACAATCGTCAGAGTCCTTCATCAGCACAAGACAGACAAAAAAGAAGCAGACGCTCACCTGCAGAGACAGAGGATGAAGAGTTTGAAGGGCCTTATAGATGGCAGCTGAATACTGGAAAAGGCTGGAAAAACATTTCCAACGATCATATTCTAGAAGCCCAGTATTCACTTCCTAACACCAAAGGAATCAAGATTTACAACACCTCTGCTGGGGCTGTTTCGATTGACTTCATGAAAATGCGAGTTCTTaagaaaacaaacattaaagtCCGGCGTATGAGCTCAAAAGACACAGAATGGCTGTGGTATTACAGAGGAAACCACTGTTGGTATCGTTATGGCGACAAGGGCAAATCCAGCCCGATTCAGAGCTCAAAACTGGAAACGGAGTTTCAGAAAAACCGCAATGGTTCAGTTAAATTGACCATTGACTCTACACAGTATGAGATATGCTTTAAAGGAATGCGTCAGAGAAATGTATCTACAGGCCATAAAAGGACAATCAGACGCCGCCCTAAATACGAGCCCCCCAACGACGGAGGATTACATGCTTTAAGCTCCAGAATAAAAAACATGATGAGTCCTTCAACAAATAAAACTCCAGAGTGGCAGTTTCATGGGAGAGATCATTGGCATACCTTCAAGAACACgGGTGGTTGTTCAGTCTCAAGTGCTGATATTGAGAGATGTTTCCAAAAGAACCAAACTACAATGAACTTTACTGTGAATGAAGACAACTACACTCTGGATTTTGGAAggATGCGTCAAATAAACCAGAGAACAAAGGCTGAACGGAAAGTCAGACGCGTGTAATGTGGAGCAGAGGCAAAAATCAGGATCCAAATTCACAAATGAACACAAACTTTATATAttgattttgaatttaaatgttagTGATTATGATTTTGAATGTTATATCTGCAATCTTGTTTGGTAAACTGCCTGTGAGAAACAGAAAACCAATGTCTTAATTCATGTTTAATTAGTTTTGATAAATGTTATGAATATTTCTGAAATGCTGCTTGCCATATCAACTTGAAGAAAAGTATGAAACGTTTCTAAATGACGTATAACTTTGCTTTCTGTTTAacttaaagaaaataattttttggcagtgctattatttttattattaccttGTGTCATATCAATATATTCATGGTGGTGaatatttttgctattatttacAGAAAGTACAAATTAGcttgagacaatttttttctagtCTGTTTTACTTTAATGTATAGGCAGATTTGTTACAAGCATCAGGGTTACACGCAAAAAAGTTGTGTAAATATCGACTTGAGCATGCAATATCATCTGCAATAGCATTCACTGCAGCATATTTTACATTACAGTCTGTAAACCTTACAATAAATTAGCATTACATGCAATGACTAAGACAATGTTGAAGGTGAACCTGTTTTTCACACAGGTTTTTTCTTATAAACTGAACTGTTTAATTAGGGCTAATAAAAGCTATGCAAGAGTTTGCGTTTATGGATGTGGTTTTGTGTTCTACTTAAATAAATTGATGATAAATGAGTccttatttaacaaacaaacacattatgtactaatgcttttttttttacgttcTTGAATGTATTCTGATCACCTTGTCATCTTAATTGCATTATATTTActatgtttgaaaataaaaaatgcagactCCTTTGTCTTGGCTTATTTTAAGTGGTTTACAGACCTTACACACAATTAAACAATATCCACACAAAAGTCCTGCTTGATTAGAAGTTTCACGCATTCATTTAATATCAACCTTGATTTTTaaccctttttttttcttaaatacattTTGACAGTGGGTAAGCTATAAAAACTGCAATATTTAATCATTGTGAACAATAGGTTATCTATTTTGTTAGCAAGGCTTCAGTTGCTTTTTTAAGTAATATTTGTGAGTTTGGATTATAAAGCAAAGACTTTCCTGTTGTCTGCTTTTTAAGTGCTGCAGTACTATATTAGTTAAAATTATGTACATATAATTATGTTTGTTAGTTGTTATGGATAAAAGTTTATGTAGCCTATCGATATGCTAAAAATGTGTTTGCCACTTCACCAAAATTAGTAATGCGTCAACATTAACGTTCTTTTTTATCATTGACTAATCAAAGGcagtaataaaaacaacagttttttttgtaGTCATTAGAATCGCTTGTAAAGAAATCCAAACATTTCTTTGATGTCATacttttctgttgttttgttttttgacacGAACATTTTCCCCTGACATGTGTGCCTAAAAGGGGCCTACGTCACGCAACAGTAAAATGGGGGAAAACTAAACACGTATCACTGTCAACAACAGATGTTTAAATACCACCACAGCCCTGCCTTCATGAGCCAGAAAAGAAAGCGAAACTGATTAGCGCTAGCCTACAGAACatgaaaatatgtttatttgacaaGCGTTTTTAATCTGGTATCGACGTATTCTAGGAACTATGTTTGGTGAGTATACCAATCTTTCATTATACATTACAATTTTTATGACATGACCTCTCTGATCGAGAATAGCTGCATGGCAGAAATAATTAGTTTATGTCGCATTCATCATGTCgta

Function

symbol description
si:ch211-244b2.3 Predicted to enable zinc ion binding activity.

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8699 Predicted to enable metal ion binding activity.
ZDB-GENE-030131-4737 Predicted to enable zinc ion binding activity.

Ensembl:

ensembl_id ENSDARG00000045530 ENSDARG00000069244

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055820 False 1934 mRNA 0.39 13 26082530 26095755
TCONS_00055821 False 1515 mRNA 0.43 13 26082943 26095766
TCONS_00055822 True 2872 mRNA 0.36 10 26095462 26107841

Neighbor

gene id symbol gene type direction distance location
XLOC_028805 usp44 coding downstream 46760 26021749 ~ 26035770 (-)
XLOC_028804 CT573048.1 coding downstream 75074 26006442 ~ 26007456 (-)
XLOC_028803 fgd6 coding downstream 170921 25859445 ~ 25911609 (-)
XLOC_028801 nr2c1 coding downstream 223225 25838345 ~ 25859305 (-)
XLOC_028802 BX640593.1 coding downstream 241628 25840786 ~ 25840902 (-)
XLOC_028807 BX957270.1 coding upstream 19336 26127177 ~ 26147550 (-)
XLOC_028808 NA coding upstream 143033 26250874 ~ 26252121 (-)
XLOC_028809 st8sia1 coding upstream 195772 26303613 ~ 26322836 (-)
XLOC_028810 b4galnt3a coding upstream 283010 26390851 ~ 26413391 (-)
XLOC_028811 CU137645.1 coding upstream 299305 26407146 ~ 26407263 (-)
XLOC_028797 NA non-coding downstream 585463 25494456 ~ 25497067 (-)
XLOC_028794 NA non-coding downstream 834682 25245031 ~ 25247848 (-)
XLOC_028789 NA non-coding downstream 1033523 24833526 ~ 25049007 (-)
XLOC_028812 NA non-coding upstream 309666 26417507 ~ 26422227 (-)
XLOC_028813 NA non-coding upstream 644507 26752348 ~ 26765810 (-)

Expression


Co-expression Network