XLOC_028809 (st8sia1)


Basic Information

Item Value
gene id XLOC_028809
gene name st8sia1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 26303613 ~ 26322836 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055824
TGGCGGAGCTGAAGACGTGCGTTAAGAGTGATGGAGGTACAAGATCTCTGGATCCCCTATAAAAACCCCTAAGATTTCTCCCGTTGGGCCAGACATATATGTAGGATTCCCGcgatattaataacaataacaaactcAGCCATTTGCAGAACAGGGAATGAGAGGAGGATTTGATGCACGCGTGAAAATCGGATGCCGCACCGCCGCGCGATGGAAATAACAGGATAACGGGATCCAAGCGGCTTTTTTCTACTGATGGAAGCGGCACCAAAATAAACGGGCCAGTTGCGagcacgtgttttttttttttttttttttttttgactaacaGTTAGTCGGTTTGTGGCTTTTTTTCTTGCAATACATCGGCGGGATGGTGTCTTTGAGATGCCACAGGAGCAAGTATATTTGGGCCACTCTGGGGGTGCTGGCGTTGTTGTGGCTGTACATCTTCCCCGTATACAGGATACCCAGCGACAAGGAAATGGTGGAGGAGGTTCTGCGGCAAGGACAGACATGGAGCAGGAACCAGACCGCGGTGGAACTGTACAGgaaGCTGCTGACAGATTGCTGTAACCCAAAGAGGATGTTTGCGGTTACTAAGGAGAATTCGCCATTAGGCAAAGTCTTGTGGTATGATGGTGAATTCTACCACTATCACACAGTCACCAATGAGACCTACCCCATCTTTGTACAGgATACACCATTGCAGCTTCCTCTAAAGAGGTGTTCTGTTGTGGGTAATGGAGGGGTGCTGAAACATAGTGGCTGTGGAAATGAAATTGACCGAGCTGACTTTATCAtgagatgtaACCTTCCTCCTCTGTCTAAAGATTATACTGATGATGTTGGTACCAAAACACACCTGGTGAGCGCGAATCCAAGTATTATAGAAAAGAGCTTTCAGAACCTACTTTGGTCCCGCAAATCTTTCGTAGAGAGCATGAAGGCCTATGGTTCCAGCTACATCTACATACCAGCGTTCTCTATGAAGCCTGGCACTGACCCGTCATTACGAGCATACCACGCACTCGCAGACTCCTCCTCCAATCAGACTGTCCTCTTTGCTAACCCAGATTTCCTTAAAAATGTTGGCATATTCTGGAAAAACCATGGCGTTCATGGCAAGCGATTATCCACAGGGTTATTCTTAGTGAGCCTAGCCCTTGGCTTATGTGAAGAGGTGACAGCTTATggtttttggccattttcagtGGGCCTAGATGAGCGACCTGTCAGCCACCACTACTATGACAACATTCTACCATCCTCAAGATTTCATGCCATGCCTGAGGAGTTTCTTCAACTCTGGCATTTGCATAAAAGCGGTACATTGCGGATGCGGGTTGGCAGTTGTGCAAAAGAGCGGATGGAGTTAAAGAGGGAAAAATAAATAGGGTAACCCCAACAACAAAAATAGCCATCCTGCAACAGGCATGAGAATACTTTAGGTTGTGAGGTGATACTCAACCCCCAAGGTTTTGGTGTCTAGTTCTTTTGGTGTCTATATGCTTGAACCACAACTGCTACCAACACACCCTTTCTTCTGTTTGCCAAGGGACTGTTGTAAAGACTTGCATGTGTTCCCAACCTCATGTATGCACTCAGTGGAAGCTTGTTCTGTCCTTTTATTGAAGATGTGGGGGCTCAGGTGTCATGTGACAAATTTAAACGTCAGTTGATTGAAGGAGGGGCTGCTTTAAATCATGTCTTAATAACTTTAAATGGGAAACCAAAGCAATTTAGCTTTGgtcattttgaatattttttgtgtttttagtttgtttaatccTGAGATGGGCATTGAATGTAAACATTACAAGAAGGAAATAAAGGCCTGTTTTATGAGTTTGATGCTGGTTTAAAGTGAAGGCTGTGGTTCAtgtattattgtttgcttttttacttttaacaTTCGATGAATTGGAGTGTCTACTAAAAATGCCTTGTGGGTCTGGATCTGTCATGAAACATGTCCCAGATATGACTATATCGTGCTAGGAGTGGGACAGGCATACACTGAGAAAGTGTATTTAATTTTGAGGCATACATTTCATAGAGAAGAGTGAAGTTTGTGTGCCAATGGAAAATGTGTTATATCTTCTGGAAGACTCCATTTTAATTCGTATTTGTGTTATTGGTATGTGTTTGAAAATGAGTGGTTTGTGGGAAGGAGCCCTTCTGATGTTTTTGAAGAGGCACCAATCGTAGAGTAAACATTTTTTGCCTGGTTAAGGTGCTGGACACCTTGTCCTTGACATGTAAATAATCAATCATCAAATTTGTTACTGTTTCCACAAGAATCATGGTTTCTCTGAATGTAATGGCAGCCGTTTTGATAGGCTGCCAAGTAACTTGTTTTTTTGACttgttatgtgtttatttattattattttttaattcaactgcACACAGGGAACTTGGTTGAAATCGTGTAGGTGCTAGCTGTACACATGCACTGTAGTTTAGATGTAATAAACCATTACTGACTAAGTTTTAATAGGTACAGTTGGTAGGAAAGGTGCACTATAATGATGATTAACGTcagtacttaaagggatagttcacccaaaaattaatatgaagtttattgacatttttttagcTAGTATGTTTTGAGTAAAACTAATTGTATAAGCTGTTTTGTGCATTAAAGTAAACATTGGCAAGACCTACTGTTGATGGTTGATAGAAAACTTAACCAGGTCACATTTCACCTCAGTTACATTGTTATAATTGCACAACTTACAAGAAATATTGCTGCATAAatgttaaatgcttttttttgttttgttctgttatttttctttttacattttggggtgaactatgacCCAGGTGATCTTAACTGTAATTGTGTGGACTCATTTGATTATCTTCAGAAAATACTATTACCATATTTTCACACTTTAAGCCAATGAGTGCCTTTATCAGTATTAAAAAAGGCTATGGACAACTTTATCATGAACCAGTTTTTTATCCCCAAAACGCCAACGTAACCtcacagaattaagtattttcaAACCAACACTGATGTGCAACCCTACAGAAagactttaatttattttgatttacgATGTGAAATTAAAATCCTTGATGGAGTTTCAAAAAAGCATGCGGTTGTAGAAGGACCAATGTacattactgtcatttttttaacattgcTTAATTGCCAGAAGACCACATCTTTAGCGTAGATTAAAGATCTgatctttctttttttgcactttttttgtgcTGTTCAGTATTGTGGATGAGTGAGGTTGTAATTTGTGTAAGTAGGCATGCACGACTGtgatatataattgttttttaaacagatttttgagCAAAAACTCATTAACtattatgtattttatgttttgccctTTGAGCCATATGAGGGTGTGTGCCCTACTGAAACTGAGCTTACCTCAATTGTACTAGTCACTGTTAAAATCATTGACAAAGCTCACAGGAGCTTGGATTTTAGGTATTTAAGTATGTTTTAGTCCACTCTGCTGCAATTGTGTCCTATCATGTCAATCTTCTAGGCTCAAGCAGTTGGTTGATGGTGTTTGTACTTGAGCATGTCAAAATCCTCTAACAGGAACGAGTTTGAGCATTTTTTACATGCCACATGGGTTATGTCAATAAGTTGAAAgaaaaaattgtcagaaataaacaaaacactgcTTTTAAACAAT
>TCONS_00055825
CTTGGCGGAGCTGAAGACGTGCGTTAAGAGTGATGGAGGTACAAGATCTCTGGATCCCCTATAAAAACCCCTAAGATTTCTCCCGTTGGGCCAGACATATATGTAGGATTCCCGcgatattaataacaataacaaactcAGCCATTTGCAGAACAGGGAATGAGAGGAGGATTTGATGCACGCGTGAAAATCGGATGCCGCACCGCCGCGCGATGGAAATAACAGGATAACGGGATCCAAGCGGCTTTTTTCTACTGATGGAAGCGGCACCAAAATAAACGGGCCAGTTGCGagcacgtgttttttttttttttttttttttttgactaacaGTTAGTCGGTTTGTGGCTTTTTTTCTTGCAATACATCGGCGGGATGGTGTCTTTGAGATGCCACAGGAGCAAGTATATTTGGGCCACTCTGGGGGTGCTGGCGTTGTTGTGGCTGTACATCTTCCCCGTATACAGGATACCCAGCGACAAGGAAATGGTGGAGGAGGTTCTGCGGCAAGGACAGACATGGAGCAGGAACCAGACCGCGGTGGAACTGTACAGgaaGCTGCTGACAGATTGCTGTAACCCAAAGAGGATGTTTGCGGTTACTAAGGAGAATTCGCCATTAGGCAAAGTCTTGTGGTATGATGGTGAATTCTACCACTATCACACAGTCACCAATGAGACCTACCCCATCTTTGTACAGgATACACCATTGCAGCTTCCTCTAAAGAGGTGTTCTGTTGTGGGTAATGGAGGGGTGCTGAAACATAGTGGCTGTGGAAATGAAATTGACCGAGCTGACTTTATCAtgaggtgagatttttttttcatgttaatgAATTCAATTGTTCAGTAAAGGGCTGGTCAGTTAGGATTACAGGGATCTTTATATGAGCTCTGTGTGATTTTTCTCTTTTCAGGCAGATATTTCTGATATGCAAGAAGAAATAGAAGCTGGGATTTTTGGGGTTCTCAGGTTAGATGTGGGCCAGGGATGGGCAACTGTGGGTAAACGCTGAAGGGCCACTGTCTTGCTAAGTTCAGCTCCATTGTTAATCAAACACTCCTAATATATAGCCTTTGTCTTTAGGATTGATTGATTTGAGATGGAAAAATGTCTCAATTACAGTGACCTCCTTGAACCAGTGTTGACTACGTCATATCATCTTCCTCTGTGCCCTTTTGATTAAGCCTTAGACTCAAGTGTACTTTTTCAGTTTTTGCAGCTTTCGAATTACACTCACTTGCAGATAATGAAAATTGAAACACAAGGACAACGTTCAGCAAGGCTTTtaggcaacccaagctcattctggaaacgtaggcccgcggacgtttctggagaccgctatttacgtggccggaggtacgtaaggccgcgtttagtttttttcgagcgaacactgcggggcggtgtgacgccgctccacCCCTCCTCTTCctcgcctccgtgtggagggctttcccgatgcaaccagtttgtctgcttaCCTGACGTTAcctgcgtcggcggagcggaggccccggaggaggagccggagccggccgcggggacaacgactgggatcgagtccggggaacagcaggttccggaaatcaggtaagacgaaaaacggaatccgaaaaataaaagcgagaacgcggcgggatccggaaacgcggtcaaaatcgaagacgagggcttttgcttttttttttttctgaacggcTTTTGCGacccgtcgctcgggtttagggaaggagggggaGGAGGAGGAACAGGAGGGCGGCcaagtcggccgatccggcggcttttcgcgcaagaacggcgcgcgctcccgagaggcacccgagacgcgaaaaagcgcgcacagcggcctctcgcggatccgcgaaaacaaacaccgctcgaatacgtacctcccgggacataaatcgtggtccgcagaaacgtccgcggggctacgtttccacaatgagcccgggttgcatttagggtgcttttacacctagacATTTGTTTCAGAACCTTGCATGTTTCTCCAGTTAGCAcgattcgtttggcatatgtgaatccagcaatcacgcTCAGATCTGTGCCAAAACAATCTGTTCGAGAACGCCTGAATGAGGTAGTCTCATCTCAAATGAAActaactctggagcagatcgattgtagtgaaaAAGCAAAAAGAtctgaaccaggctatatcacattGTATTATAGATATGTATTAAGCATATATATCGCTATATAAAGAGAAAGTATATGAGTTGGGagggatgtcattcctactggtaaatgtgcatttcatatcaaatacgaaagtgaaagcatgttaactattaatgagagctgtttatacatcaggaaaattgaccgatcagcagtcttggtttatctgttatctGTATCaacattcaaaataaatgcacagcttttaatgtcttattgctcatcgtcataaattaaaataagaatgcATGACAGATGAACGGGACtttgcaaaataaaccatgaaactctgaTCAATGTGACgagagagtttactcgcacatgacttgCTTTAGCTCTGTTGGTCCGTTTAGAAAATTTGCCATGTGAAAGCAAACCAGATCAAGAGCAAAGTGcaaaattgtaacaattttaatacaTGTTTCGGAAACATAAGAATCaatccacaggtgtgaaagcaccctcagtgaAGATTTGCATGTCAA

Function

symbol description
st8sia1 Predicted to enable alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity. Predicted to be involved in N-glycan processing; oligosaccharide metabolic process; and protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including corpuscles of Stannius; forebrain neural plate; kidney; nervous system; and unfertilized egg. Orthologous to human ST8SIA1 (ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1).

GO:

id name namespace
GO:0009311 oligosaccharide metabolic process biological_process
GO:0006486 protein glycosylation biological_process
GO:0006491 N-glycan processing biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0003828 alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity molecular_function
GO:0008373 sialyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051005-1 Predicted to enable alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity. Predicted to be involved in N-glycan processing; oligosaccharide metabolic process; and protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including corpuscles of Stannius; forebrain neural plate; kidney; nervous system; and unfertilized egg. Orthologous to human ST8SIA1 (ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1).

Ensembl:

ensembl_id ENSDARG00000098221

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055824 False 3686 mRNA 0.40 5 26303613 26322834
TCONS_00055825 True 2696 mRNA 0.46 3 26314018 26322836

Neighbor

gene id symbol gene type direction distance location
XLOC_028808 NA coding downstream 51492 26250874 ~ 26252121 (-)
XLOC_028807 BX957270.1 coding downstream 156063 26127177 ~ 26147550 (-)
XLOC_028806 si:ch211-244b2.3 coding downstream 195772 26082530 ~ 26107841 (-)
XLOC_028805 usp44 coding downstream 267843 26021749 ~ 26035770 (-)
XLOC_028804 CT573048.1 coding downstream 296157 26006442 ~ 26007456 (-)
XLOC_028810 b4galnt3a coding upstream 68015 26390851 ~ 26413391 (-)
XLOC_028811 CU137645.1 coding upstream 84310 26407146 ~ 26407263 (-)
XLOC_028812 NA coding upstream 94671 26417507 ~ 26422227 (-)
XLOC_028813 NA coding upstream 429512 26752348 ~ 26765810 (-)
XLOC_028814 NA coding upstream 516242 26839078 ~ 26839608 (-)
XLOC_028802 BX640593.1 non-coding downstream 462711 25840786 ~ 25840902 (-)
XLOC_028797 NA non-coding downstream 806546 25494456 ~ 25497067 (-)
XLOC_028817 CR751234.1 non-coding upstream 818343 27141179 ~ 27141303 (-)

Expression


Co-expression Network