XLOC_028812


Basic Information

Item Value
gene id XLOC_028812
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 26417507 ~ 26422227 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057358
acttttaactgtcatgtacgcgccgtgtcgcggcgccgagcggcgcttctggtgtgcgacctgcttaacgcCCGAGCTGCTGCTCCGCCTCACGCCCAGCCTGTTGATCGGTGGACGGGAAAGCGCGCATGGCATCGGAAGGAGCTCGAAAAGTATAAGatggataattgcgtgaaaatcaaactaaaagaatgcaatcttgaggagttaatccccacatttgaagcacagGAGCGAACCTTTCCTCGTTTTTAGGTCAATTTGAATACAATTCAGAGGGTAACAATTCAATTAAAGGTTTCTCGATGcataatgatgcatttaatgcataatgattgtcttagttattttattaacaatgaaaatgttatttttatgtttgttattagggtggcatgggggcgcagtgggtagtgctgtcgcctcacagcaagatggtcgcttgTTTGAGCCTTGGATGGGTTTCccctccacagtccaatgacatgcggtgtagctgaattgggtaagctgaattgtccatagtgtgtgtgtaaatgagagtgtgatgggttgcagttgaaagggcatctgctgcgtaaaacataaaaagatgaCGGTTTTGTGAAAGTTGTGATTTGGTCACAGCTATGGTTTCTCAAATTTTTAGTGATAAGATGCTTTATATAGATAGTGAATGCAACAAACTCTAAATGGCCTGTAAgccaattattttcatttaaggaGAAGTCCACTTCCAACAAAAGATTCACACATAATGTACTCACCCCCTTGTCACCCAAGATGTTCATGTCATTCTTTCTTcagtcagaaagattttttttttaggaaaatatttcAGCAATTTTATCCATCTTGAACTGAGATTGTGCCtcatttttgaagtttttaaagaaaatttaaatgcgGCTTCAAATGATACAAATACGGTTGCAAACAGTCCCAGCTCAGGAAGAAGGGTCTTATCTATTCTCattaagaaaacacaattaaatacttaataatttcaaatgctcatcttgccttactattacttattaaaaaaagttccttAGGCAAACCTGTTGTTGCATTGTCATCTTCACTCGGGCCAAAAAATTGCAGCATGGTGCCAGGGTCAGTGGTTAACTAATGCCAACACTGGCTGATAGCTTGGTGTGTTATGGCCTTAATTGCTTCTAAAGGTATTTTAGGTGTTCTAAAGTTAACTCTAAAGATATTTAACTTGTacacttttgagtttttaataaatcttacttctatttattttttcagattgggaCCAATATTGCTGAGTATCTTCATCCATTGAATTCAAGAATCTATTGAGTTTCCTCATGTTCTCGTCCTTGGAGACCACCACTTCTTTCAAGCCTTTGCTCACGTGCTGTGCTATTTATTATTGCAAAGTACATTACTTGCCAAAGTGGACGTTTGCTATAAAGCATTCTACATCTTTGGTGTGAACTACCCCAAGCAGTGTTCCCTGGTGTGGCAGACTGTGGTTTATGGACATCCTGGGGAGGAGACACTAGCAGTAAGGGTTCTGCTAGCATTAatttttgctgacaaacagtAATCATTAATACTGTGACCTCACTGCTTTCTTGGATTCTGTGTTCTTTAACTTgtactttggattgtgggggaaaaggagcacccagagaaaacccacacgaacacggggaaaacatgcaaactccacacaagaacaccaactgacccagctgaggcttaaaccaccgaccttgttgctgtgaggcaatcgtactacccactgtgccaccatgacacccatttctaaagaatagttttaataactcatttctaataactgatttcttttctctttgctatgatgacggcacataataacagactagatattttttaagacactctacactgcagttacattgcaactaatgtttcttacagactcttttatatctcaggattgatgtttgcacatgattgttcgagtaaaagttaaaaaaagttttcctatttcaaatttgttttaaaatgcttccatcctcaggtttcattttaacttttatatctgttttttcttcaaaactgcatttacattgaacttGATCATCCTTACTGATGATTGCTTTATAGCTCATATATTGATGTTTGCACATAATTGGTAAAGGgaaagttataaaatgttttcttattttttcttaatataaaatttgtattttcttagtttttattgtttgttttgttttttcaagctgtttgatgccttttcattattactttcacatattattttctgcattgcagttgatgatttatatgagaatatgttgatgtttgtgctcaaattactttctgacttcagtcatttagatgcattttcattattacttccttatactattgtttttctctactctgcaataacattgcaattgcctcttactgatgattcctgatttatacatgatgcaaatgtttttgaatgtatttcaaatatgcattttcttaaggtaatttgtctgatttcagtctgatgcattgttactgaactttagtcagtgtttctgtgatacagtttgataaattttcacagaaatcgtcttaaccctttaacaaccctttcaagaaaaaaaattggattgcatttctcaacTGCTAATGTTGCTATTGAACACAATCAGTACATTTTAACACatgttataatttctaaaatatcaacctctaccaaatgattgatatgtatgtttatggtaaaagtaccagaattatgaaaaatctgaaaaattatgtgtaagaccaattaaaaaaaaaaaaaaaaaaaaaaaaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatttaaaagaaatattttgaacactaaatcatcttttttcttatgactttaacagtcattatttaaaacagtaaaaacgaggtcaaccatttggtagagcaggcagtcaaagggttaatgctgaggtgcagatgggaaaaatctcaaattcatttggacacattttatcttttgtcataaataaaattccattactgaacaactatgtattgctgtagaattgtttttattttagtgattttaatcatcagtttctagattaaatttctgacccattttgggttacattcaacccagcagtgtagtaatttttaactaatagttgggttaaaatcacaacccagcatgctgggttaaacttgtaacccaacttgct

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0048731 system development biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0007498 mesoderm development biological_process
GO:0001757 somite specification biological_process
GO:0021571 rhombomere 5 development biological_process
GO:0006364 rRNA processing biological_process
GO:0021572 rhombomere 6 development biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0071363 cellular response to growth factor stimulus biological_process
GO:0060429 epithelium development biological_process
GO:0070848 response to growth factor biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0048856 anatomical structure development biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0010467 gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0061009 common bile duct development biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0007379 segment specification biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0044344 cellular response to fibroblast growth factor stimulus biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0071774 response to fibroblast growth factor biological_process
GO:0007167 enzyme linked receptor protein signaling pathway biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057358 True 3263 lncRNA 0.35 3 26417507 26422227

Neighbor

gene id symbol gene type direction distance location
XLOC_028810 b4galnt3a coding downstream 4116 26390851 ~ 26413391 (-)
XLOC_028811 CU137645.1 coding downstream 10244 26407146 ~ 26407263 (-)
XLOC_028809 st8sia1 coding downstream 94671 26303613 ~ 26322836 (-)
XLOC_028808 NA coding downstream 165386 26250874 ~ 26252121 (-)
XLOC_028807 BX957270.1 coding downstream 269957 26127177 ~ 26147550 (-)
XLOC_028813 NA coding upstream 330121 26752348 ~ 26765810 (-)
XLOC_028814 NA coding upstream 416851 26839078 ~ 26839608 (-)
XLOC_028815 creld2 coding upstream 659745 27081972 ~ 27099285 (-)
XLOC_028816 zbed4 coding upstream 690172 27112399 ~ 27129697 (-)
XLOC_028817 CR751234.1 coding upstream 718952 27141179 ~ 27141303 (-)
XLOC_028804 CT573048.1 non-coding downstream 410051 26006442 ~ 26007456 (-)
XLOC_028802 BX640593.1 non-coding downstream 576605 25840786 ~ 25840902 (-)
XLOC_028824 CU694442.2 non-coding upstream 2010104 28432331 ~ 28432445 (-)
XLOC_028825 FO704886.1 non-coding upstream 2119794 28542021 ~ 28542135 (-)

Expression


Co-expression Network