XLOC_028813


Basic Information

Item Value
gene id XLOC_028813
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 26752348 ~ 26765810 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058219
AGAAATAGAAGTATTAGCACAGAATAAAGACAGACCTAGTTTTTGGAAAAGATATAGAAAACAGTTTGATGACATCTAGGTTGTGCAGAAAACCCATCAATACATGTGAACTTTGTAGTCACAAGTCATCACTATAttgaaataaacacaataaacaaaatgTTAATTGATGATCAGACAGATCTCGAAAAAGCAGCAATATAATTATGAAACAATCACCCAATCATATGACACACTACGTACTACATAATATTCATGTTACAATTACACATACAGTATTACTGTACGTATACACTGAAGGGGGTGAGAGTCAAAGGTCACTCTGGCCACCCTGGCGACAATGCTGTTTGCCTTCAGCTCTGGCGATAAGAgcatcaaaattcgctacattgatctcgtgtCTAAAGAGGTCGTTGCAGCATATCATCTCAGTTAAATTTCTGCATAAATCttgctttctagcgtgaaaatgttgcacactttttataaaattcatttaacaatgaaaGAAtgagttgcatgtggtgtggctttgctccacttattcattatgtgtccatatgtctgaaatatcctgaagcagcaatactgttgtCATACAAAATTCCCactcttttaaagaaaaaaaaagaatgacattaatgcacatcagtaactttttaatgtatgtttctataagaaaaaaaaaattgaaaatctgggaccgcaataatcaaacccttgtaaacaactgtggtcagaaccaaagttgactagactgtgttctctggaatcCCCTCAtgcggtggacttctacattttgattgcttgcagccaaatcgcgtcatagctcattaccataaagttgacttgatttcaactctcctcgccGCTCACACTGGCGAAGACAAGCCACGCTGCTCCTCGCCACTTATCGACGCCTGCTCccattgaaaattaatgacttccggctactttgacgctctcgccactttcggtcTGAACGTACTGTCACAGCTTAAATTcaacattaaatttaattaacataTATTTCTGGCTTTTGTGGGTCTGAAACGACTTACTTTTTCTCAGATCAATCCACGAAGGCTGTAATTTAGGTGTGGGTGAAAATTGCTACaaagttattttttataaagttatCATTTACAAATGATGACATTGCAGGATTTTGTATCATAATGACTTTAAAAGCTATTGATTACCTAGCAgcaacgtggtggcgcagtaggtagtactgtcgcctcacagcaagaaggtcgctggtttgagcctcggctgggtcagttggcatttctgtgtaaagtttgctgtgtggagttcttcctgcgttggtgtgggttttcttcgggtgctccggtttcccccacagtccaaagatatgcagtacaggtaaattgggtaggctaaattgtccgtagtgtatgattgtgcttcccagggatgggttgcagctggaagggcatccgctgcgtaaaacatgttctggataagttggcggttcattctgctttggtgaccccCGATTATTAAATGGATTAAGACTGAATGAATGAGTACCTAGGAGAAATACTTGGTTGTGGGTAAATCACGCTGGTGATTATTCATTGCTGTTTTATGTGGTGATTGTTACATacaggaaaaaaatataaaccaTTGATCAGTTTTCCCATCCAGCTGATAAAATCAGACCAGAACAGACAAACATTCAGGTAAAGTGTTTTGTGCCAACAACGAGCATTTCATTGATGTTTTAAGTGTCATTTCATTCCTGAAAGCTTCAATTAAGTGTTACATTCTCTGTTAGCATGTTACATTGTCTGATTTTTGTCACAACAGCAAGTTATACCACATTCTGTCATCTTTTCACAAAATGGCAGACAAACAACATGTCCAAGATGAATGCTGGGATCAACAGGCCTTTTTAGATAAAGGTATGTTCCAATTTACTATAAAGTTCAAATAGAcctacaataataaaatatgggCCTTCTTTCAGGTATTCTCTGAAATTCCTGACCATGAAAACTATAGCCAATGCAAATAGGGTTGTGGCACATTACCACACAGTAAAAGTCATTTTACGTTTATCATATAAGGGCTTTAATACAGCTTTCTGTGTGCTGATGCAATTTTATAAAGTAGATAGTGAATCACAAATGTAGTAACCCAAGGAAATAGTTTTTTTCTAATGTTTATCAAAGGTCATGTTGATTGCACTGCTACATCACAGAAAGTCAAATTTACAATTGTCAATTAACTCAATCAGttgtaatttaatgaataaatcatttgaattcaTAAAATCTTACATGACAAAacgcacaaaaacaaacaaacaaacaacaacaacaaaaaacgtgaatgttttaaaaaaatacgtacaaaataaatagaaatatcacTAGGGTTCAAAAAatcatatgaaaatgtaaaattcatATCATGTGCATTGCTACAGATTTTTCACTAATTCagcaaaaaatgttttagaaacttTAGTGCAAAAATGCTGCACTAATGAAACAAAGCAGATTGCAGTGTGATCTGTTGGAATCATGGTttgaacattttgaaaaaaaaaacacagcacatgCAAATATATGATTTTGATGACAACTAACTGCATTTCACCCTAATACAAAGGTACACATTGAATAGCTGTTTGGTACAACATCTCCATCTAATGGCTGCTCTCATGATGATATGTCATATCAATTGATTGCTaagtattcaaaatattttaaaataccagCTGCACATAATATGAATGTTGAAATCATATTAGTTTTGACAGTCATGTTGGGAAATGTTGAGAAGTCGTTTGAAAGATTCTTAAAACATTCTACATTCTTAATTTACATACTTTTATCAGTTAAAGGGGTTACTTAAAAGGCATTTACAAAGACAGATGATAAAGAAGTAAATCACATTTTACAGGATTACAACATCAGACATAGAAAGCAAGTGAAGAAGTTTTTGGCTTATGGTAGCACTTaaacctatatatttttttaaaaagacatgtGTGTACCTAGTGGGAATCTAAATGATCTCTGTTATAAGCACACATTTGTTCTAGCCTAAGCATTCAACAGTGCAAAATCCACTGTGAAAGGGGTCCTCAGTTTGGCACATATATCTTTTTACAGTCAAACTAAATAGATAGACacattaataaactaataaaaggcaaaaaatgtatttaacatttaaaactatCTCCCACACAAAAGCTAGTGTTTAAGCAATCAAACTAAATTTGCTTGGtttctttaataaaacaaaacaaaaacaaaaaatctatcaATGACAAGTACTCAACAATATAATCTCAGAGAGTGGAGAGAAAGACAAAAACATAGTTAtagaaatttgttaaaactatgcaacatttcaaaatatacatTAGTTAAAATGGTATTTTCACATTTCTGCAGTCAATAAAGTCTGTAAccataaatatatgcatataagAGTGTCTAATTGTTGTGGGTTTAGACTCTACATTAGGCTATGAGAGCCACTTGGGGTCCTCTGCAGTGAAATTCGAGGATCTGGGGGTATATACTGGTGGGGATGGTTATATGGTGGCGGTGGTGGAGGCAACGGAGGTTGTGAGCCATCATTCCCCCCATGGCTGTCTCCATCATCAGGTGAATGCACTGGTGTAGTAACAACAGACTGGATGAGCTGGTGATGTGTGGGACTCTGGCTAAGGAATGCCTCCACGTGCCCGTGACCACCTTTGTCTAGGACGATGACCTTGACAATTTGCTGGCACTGGATGAGGGTGTCAGGTCGTAGCTCAGTCAGGGCCACAGGGTGGTAAGAGTACGAGGTTGTGGGACTGGCACGTTGCAATGGTGGCTGTTGGATGGGCTCCCTCTGGTGGTTGAGATGGGCAGCATTCTCAGGGCTCAGCGGTGCAGCATTGAGCTGGAACGTCTGAAGCCTATAGTTCTACCCGGTTTCGCAGGAATGCAGAGCAGATTCCATTTGCCATTATTCTGGTGTCTCATTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058219 True 4021 lncRNA 0.37 2 26752348 26765810

Neighbor

gene id symbol gene type direction distance location
XLOC_028812 NA coding downstream 330121 26417507 ~ 26422227 (-)
XLOC_028810 b4galnt3a coding downstream 338957 26390851 ~ 26413391 (-)
XLOC_028811 CU137645.1 coding downstream 345085 26407146 ~ 26407263 (-)
XLOC_028809 st8sia1 coding downstream 429512 26303613 ~ 26322836 (-)
XLOC_028808 NA coding downstream 500227 26250874 ~ 26252121 (-)
XLOC_028814 NA coding upstream 73268 26839078 ~ 26839608 (-)
XLOC_028815 creld2 coding upstream 316162 27081972 ~ 27099285 (-)
XLOC_028816 zbed4 coding upstream 346589 27112399 ~ 27129697 (-)
XLOC_028817 CR751234.1 coding upstream 375369 27141179 ~ 27141303 (-)
XLOC_028818 tafa5a coding upstream 486055 27251865 ~ 27398414 (-)
XLOC_028807 BX957270.1 non-coding downstream 604798 26127177 ~ 26147550 (-)
XLOC_028804 CT573048.1 non-coding downstream 744892 26006442 ~ 26007456 (-)
XLOC_028824 CU694442.2 non-coding upstream 1666521 28432331 ~ 28432445 (-)
XLOC_028825 FO704886.1 non-coding upstream 1776211 28542021 ~ 28542135 (-)
XLOC_028826 NA non-coding upstream 1859059 28624869 ~ 28632583 (-)

Expression


Co-expression Network