XLOC_028816 (zbed4)


Basic Information

Item Value
gene id XLOC_028816
gene name zbed4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 27112399 ~ 27129697 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055830
CGCTACTACAGCGCACTGTTTACGGCACAGAAGACAAAGCAACCAACTCAATTACAACACTGGATCAACCATACGCTTTATTTAACCATTTCACAACCGAAAGTCGCATAAGTAAACCTCAGGATATAAAGATTCTACAAATGAATACAAGTGATTTATGCTGTCTTAAGTGGAGCTCCTTCTATCTGTGGCATCAGTTCTCCAATATAACATGTCTAACATGTAAGTAAACACTTGGATGGAGAAAGCCACACTCATGACACTTGGAGACTTAAAAAAGCTGCTTTGAATAGAGGACATTTTCTTTCCCTGCAgaatttttttctgcaataatGGACAGTGAAGACAGCCTCTCACAAAAGACTGAGGTTGCAAGCCATAGGCATAATGGCTCCAAAGATAACAAAAGAATTGAGGCCAAAGGAACCTGTTTAAAAATCGAAGGGAAAGATGGGTATGTGTTCAAATCATACAGAATTACTCCTCAAGAGATACTGGAATCAGAGTTTCATACCTGTCCCTCTGAGACACTGGCAAAAGACTCTTCTTTGGTGTCTTTATCATTTGAGTCCACAGAGGAAGATGGATCTTCTGAGGTTGAAAGGCTTTCAACTGAGGATTCGACAGCAGAATCTTGTGAAAAGCATGATTCTCAAACATCTCCAAATATTTCAAATAAGAGCCagaacactgaaataaataactCAGAAACTGAAACAAGTGTATGCATCAAAGCAGAACCAAAAGTAACAGGTGAAAATGCTCAGGATGATGAAAAGCTAGCATTTGATGGAACATTTGGGCCCTTTGCCACCAGGggttatgatgatgattatggtAGCTTGTTCAGTGGCTATTCAAGTACTCTTTATGATGTTGCAATGGATGCTGTGACACAAAGCCTTCTGTCATCCATAAGAAGTCCCCTTAACCCTAGAAAAAAATCTCCTGCTTGGAACCATTTTTTCATATCACCACGTGATAGTACCAAAGCAATCTGTATGTACTGTATGAAAGAGTTCAGTCGGGGTAAAAATGAGAAAGACCTCAGTACTAGCTGTTTAATGAGGCATGTGCGAAGAGCTCACCCCAGTGTTCTTCTGCCAGACAGTGACTCATTAAATAATTTGTCCAATAATTCATCTTTAATACCTCCCAACATATCACCAAACAATGGAGATTTGCCTGCAAGCATGAAGTCCTCAACAGAAAACCATACTCAACTGTCCTCCTTTCTAGTTGAGGCCACAGACATGGTGCCCAAAGAGTCTTTACAAAAAGTAAAACCAAAAGGAGAAAAGAGTGTCAAGGGTGACTCTATTGCTGTTCAGTCCCCACATTCCTTTAACAACCATAATGAGGATGCTACAGACTTTGGGACTGAATGCCCTGGATCAGCCCCTAAGAGCTCAAGTTCTCGGCGGCGTTCAGCAGTGTGGAAACACTTTTATTTATCCCCTGCTGACAGCTCAAAAGCAGTGTGTATTCACTGTATGAATGAGTTCAGTCGTGGAAAAAACGGGAAAGACCTGGGGACGAGTTGCCTTATTCGCCACATGTGGCGAGCCCATAGAGACATAGTCATTGATGAAAATGGGCAGGGCTCAAGCATTCCTCCGCCTTACACGACTCCACCAACACTGCTTTCACGCACACAGGATTCCACAGATGTCAAAAAGGAATCCCTCTGTACCTCACACAACCCAGATACCATATCAGACAAAATGCCCAATGATGACAGTGAGAACATGACTCTTGAAGATGAGAATGATGCCACATATCAGTCCAGAGAAGAGTCCTCAATTGATCAATGTTTACTGAAAGGGGAAAGCATACCACTGTCGTCCTCTCCAGAGGAACACACTGATGGGCACAGCATAATATCTGAAGATCAAAGCTCAGTTTTTcaacaaaataagaaaattatgAAACGGGTGAAATCAGAAGTATGGCATCATTTCATTGTCTCCCCCGTTGACCAACTCAAAGCTTTGTGTCGGTATTGTCCCTGTGTCATAAGTCGTGGTAAAAGAGGAGACTTTGGCACAAGCTGTTTAATGCGACATTTAATGCGGCGACATCCTGATGTTTTAAAAACCCCAAAAAGCACAAGTGATAAAGTTTCCTCACCCCAATCACCCCACTCCAATCATGCAGCCGAGGACTTGGCAACAGATACCCTTGCTGCTGAGAACAAACCCCACACCTTGCCCATTTTCAGCAAAAAGACTTCAAAACTATGGAATCACTTTTCTATTTCATCTGCAGACCCAACAAAGGTAGTCTGTTTGCACTGTAGCCGCACAATTAGCAGGGGAAAAAAGACAACAAATTTAGGCACTAGCTGCTTATTTAGGCACATGCAGAGATTTCATGGCCATGTGCTTGAAAATAATAGCAATATCTCAGGTGATGGGCCATCTGCTGAAACTCAAGTTAAGCAGGAGCTCATGGACATTTCTACTTATCAGGAAAACGCAGAAAAGTTCAGTGAATGCCACCCAGCTGCCAAAAAAATCACCAAACTCATTGCAGAAATGCTTGCACTGGATCTTCAGCCATCAACTGTAGTGGAAAATGTTGGCCTGAATCGCTTACTGGAATACCTCCAGCCACAGTATTCTTTACCTCCCTCATCCTATTTTACCAGCACAGCAATCCCAGAAATGTATGAAAGTGTTAAAGAAGTAGTTCTTACCCACCTCAAGGAAGCTGAAGGTGGAATCATTCATTTCACAACAAGTGTTTGGATAGGCAGCCAAACTCAAGAGTACTTGATTCTTACAGCCCACTGGGTGTCATTTGAGTCTCAAGTTCTGCCTCAGGGGCAAGATTTCCACTGCTCGGCCCTCCTTGGTGTTGCCTCAATTGACTGTGACTACAATATGCTGAACATACAGAAGCAGCTTGAATATCTTTGGGACACTTGGATGGGTTCCTCAGGCCTTAAAATTGGATTTACTGTAACAGATAATCAAACAATTAGAAATGTTCTGGAGAGCTGTGACCACACCACCATGCAGTGTTTTGTCCATAACATAGATCTGATTGTTAATGAAGCCATAAAAAGCCAGAGGATGGTTCAGAACTTGCTTAGTATTGCTCGAAAAATCTGTGAAAGAGTGCATCGTTCTGCTAAAGCAAAAGAGAAGTTGGCGGAGCTACAAAAAGTATATCAGTTACCTGAAAACCAACTGGTTCAAGATGTTCCATCGAAGTGGAAAACATCCTACTTTATGCTTGAGCGATTAGTAGAGCAAAAGAAAGCAATTGATGAGATGTCAATCGAGTGCAATTTCAGGGAACTGATAAGTTGTGACCAGTGGGAAGTGATGGGGTCAGTCTGCAACGCTCTTAAGCCTTTTGTGGTAGCCTGCAGGGAGATGAGCAATCGCACTGCAACACTAGGTCAGGTCATTCCACTCATTCACATACTCAACCGAAAGATAGACATGCTTTTTGATGAGACCATGGGTATTGACAATATGCTCAAGTCTTTAAAAGAGGCATTGGTGACAAGAATGTCCCCTACACTTCATGATCCCAGGTACATATGGGCAACCATGTTGGACCCGAGGTACAAGACCTCCCTCTTTACTGAGGAAGAAGCGGAGCAGTGTAAGCATGACCTCATACAAGAGCTTGAGGTGTCTACATCTAATTCTGCAGAGACGAAGACACCTTTGTCAAATGGATGCAGTGAAATACCTGCTTCATCAAACAGCTTGGCCTCAAACAAAGAGAACCTCTGGTCTCTTATGGATGACATTAGACAGAAAATCAAGCAAGAGGAGAAACCAAAATCACTGGAGCTTGCTGTTCTTGAGTATTTGGAGGAGGACATTCTTGACCAGAGTTGTGATCCTTTAGATTATTGGAACCTAAAGAAGTTACTGTGGCCAGATCTTGCCAAAGTAGCTGTACGCTATGTGGGTTGTCCACCCAGCATTGTACCAGCAGATACACTTTTTAGCACATCAACTGTCAACTGTGCCCTGAATCAGTCCCGACCATTGCTAGAAAATTTCGAAGGACTTCTATTTTTAAAAGTCAACCTTCCTTTGATATATTTTCAGTACTGAATATtgtgttttaatattttcaaGTCTGTTTTATGCTCTGAACCTCAGCCTTGGACCACTCAAGTTACTTTTTTGAGAAGGCCTAATTActtacaaatctttttttttttctctctctctctctctcactattTGTCTCTGAGGTTCATATTCAAAATATCATTTGGATGCTATTTaacttgaatatttttttttagctggttTGAATAAGATTGTAATGAGTACTACTGTTGAGTACACTTGATAACTGGAGTCTTATTCCTGGTGAAGTGTTTTCAGGGAGGGAGGGTTATCTAGCTGTATGGTTAGTTACTGTTTGTTGctgtatttagattttattttataaatatattttgtcttcTCTCTCCTTGTGCCTTATACAAACTACTTCAGGTCAACATGCTGTAAATATAAACTGATGTGCAAAGCAAGTCATAGTcttctgatttaaatgattttataaaATGAAACGTACATGATGaatactgttttatatatatatgattatatacaTGGCCCAAAATAAATGCTGTGACagatgttttaaatgtattttatttaattattttgtgatttttgtggCTTATGGTACTGTTAGAAttatggttatttttatttttgtattattattttataattttttttggcaaatgATTTTGTATGTTAATGTACATAATGCTGTACTTTTCAGGttcaaatgttttgaaaaattgtCTTAAGCACaaatcagtttttatataaagGGTTAAATTATGGGACATCAAGGAAATGTACTGTACAATTTATAAATggtttctaaaatataatttgataGGAAGAATTCAGACTGGAACAATTAGTTGTTTTGTgttcatttgtaaataaaatattacacttTGA
>TCONS_00055831
GCCACACTCATGACACTTGGAGACTTAAAAAAGCTGCTTTGAATAGAGGACATTTTCTTTCCCTGCAgaatttttttctgcaataatGGACAGTGAAGACAGCCTCTCACAAAAGACTGAGGTTGCAAGCCATAGGCATAATGGCTCCAAAGATAACAAAAGAATTGAGGCCAAAGGAACCTGTTTAAAAATCGAAGGGAAAGATGGGTATGTGTTCAAATCATACAGAATTACTCCTCAAGAGATACTGGAATCAGAGTTTCATACCTGTCCCTCTGAGACACTGGCAAAAGACTCTTCTTTGGTGTCTTTATCATTTGAGTCCACAGAGGAAGATGGATCTTCTGAGGTTGAAAGGCTTTCAACTGAGGATTCGACAGCAGAATCTTGTGAAAAGCATGATTCTCAAACATCTCCAAATATTTCAAATAAGAGCCagaacactgaaataaataactCAGAAACTGAAACAAGTGTATGCATCAAAGCAGAACCAAAAGTAACAGGTGAAAATGCTCAGGATGATGAAAAGCTAGCATTTGATGGAACATTTGGGCCCTTTGCCACCAGGggttatgatgatgattatggtAGCTTGTTCAGTGGCTATTCAAGTACTCTTTATGATGTTGCAATGGATGCTGTGACACAAAGCCTTCTGTCATCCATAAGAAGTCCCCTTAACCCTAGAAAAAAATCTCCTGCTTGGAACCATTTTTTCATATCACCACGTGATAGTACCAAAGCAATCTGTATGTACTGTATGAAAGAGTTCAGTCGGGGTAAAAATGAGAAAGACCTCAGTACTAGCTGTTTAATGAGGCATGTGCGAAGAGCTCACCCCAGTGTTCTTCTGCCAGACAGTGACTCATTAAATAATTTGTCCAATAATTCATCTTTAATACCTCCCAACATATCACCAAACAATGGAGATTTGCCTGCAAGCATGAAGTCCTCAACAGAAAACCATACTCAACTGTCCTCCTTTCTAGTTGAGGCCACAGACATGGTGCCCAAAGAGTCTTTACAAAAAGTAAAACCAAAAGGAGAAAAGAGTGTCAAGGGTGACTCTATTGCTGTTCAGTCCCCACATTCCTTTAACAACCATAATGAGGATGCTACAGACTTTGGGACTGAATGCCCTGGATCAGCCCCTAAGAGCTCAAGTTCTCGGCGGCGTTCAGCAGTGTGGAAACACTTTTATTTATCCCCTGCTGACAGCTCAAAAGCAGTGTGTATTCACTGTATGAATGAGTTCAGTCGTGGAAAAAACGGGAAAGACCTGGGGACGAGTTGCCTTATTCGCCACATGTGGCGAGCCCATAGAGACATAGTCATTGATGAAAATGGGCAGGGCTCAAGCATTCCTCCGCCTTACACGACTCCACCAACACTGCTTTCACGCACACAGGATTCCACAGATGTCAAAAAGGAATCCCTCTGTACCTCACACAACCCAGATACCATATCAGACAAAATGCCCAATGATGACAGTGAGAACATGACTCTTGAAGATGAGAATGATGCCACATATCAGTCCAGAGAAGAGTCCTCAATTGATCAATGTTTACTGAAAGGGGAAAGCATACCACTGTCGTCCTCTCCAGAGGAACACACTGATGGGCACAGCATAATATCTGAAGATCAAAGCTCAGTTTTTcaacaaaataagaaaattatgAAACGGGTGAAATCAGAAGTATGGCATCATTTCATTGTCTCCCCCGTTGACCAACTCAAAGCTTTGTGTCGGTATTGTCCCTGTGTCATAAGTCGTGGTAAAAGAGGAGACTTTGGCACAAGCTGTTTAATGCGACATTTAATGCGGCGACATCCTGATGTTTTAAAAACCCCAAAAAGCACAAGTGATAAAGTTTCCTCACCCCAATCACCCCACTCCAATCATGCAGCCGAGGACTTGGCAACAGATACCCTTGCTGCTGAGAACAAACCCCACACCTTGCCCATTTTCAGCAAAAAGACTTCAAAACTATGGAATCACTTTTCTATTTCATCTGCAGACCCAACAAAGGTAGTCTGTTTGCACTGTAGCCGCACAATTAGCAGGGGAAAAAAGACAACAAATTTAGGCACTAGCTGCTTATTTAGGCACATGCAGAGATTTCATGGCCATGTGCTTGAAAATAATAGCAATATCTCAGGTGATGGGCCATCTGCTGAAACTCAAGTTAAGCAGGAGCTCATGGACATTTCTACTTATCAGGAAAACGCAGAAAAGTTCAGTGAATGCCACCCAGCTGCCAAAAAAATCACCAAACTCATTGCAGAAATGCTTGCACTGGATCTTCAGCCATCAACTGTAGTGGAAAATGTTGGCCTGAATCGCTTACTGGAATACCTCCAGCCACAGTATTCTTTACCTCCCTCATCCTATTTTACCAGCACAGCAATCCCAGAAATGTATGAAAGTGTTAAAGAAGTAGTTCTTACCCACCTCAAGGAAGCTGAAGGTGGAATCATTCATTTCACAACAAGTGTTTGGATAGGCAGCCAAACTCAAGAGTACTTGATTCTTACAGCCCACTGGGTGTCATTTGAGTCTCAAGTTCTGCCTCAGGGGCAAGATTTCCACTGCTCGGCCCTCCTTGGTGTTGCCTCAATTGACTGTGACTACAATATGCTGAACATACAGAAGCAGCTTGAATATCTTTGGGACACTTGGATGGGTTCCTCAGGCCTTAAAATTGGATTTACTGTAACAGATAATCAAACAATTAGAAATGTTCTGGAGAGCTGTGACCACACCACCATGCAGTGTTTTGTCCATAACATAGATCTGATTGTTAATGAAGCCATAAAAAGCCAGAGGATGGTTCAGAACTTGCTTAGTATTGCTCGAAAAATCTGTGAAAGAGTGCATCGTTCTGCTAAAGCAAAAGAGAAGTTGGCGGAGCTACAAAAAGTATATCAGTTACCTGAAAACCAACTGGTTCAAGATGTTCCATCGAAGTGGAAAACATCCTACTTTATGCTTGAGCGATTAGTAGAGCAAAAGAAAGCAATTGATGAGATGTCAATCGAGTGCAATTTCAGGGAACTGATAAGTTGTGACCAGTGGGAAGTGATGGGGTCAGTCTGCAACGCTCTTAAGCCTTTTGTGGTAGCCTGCAGGGAGATGAGCAATCGCACTGCAACACTAGGTCAGGTCATTCCACTCATTCACATACTCAACCGAAAGATAGACATGCTTTTTGATGAGACCATGGGTATTGACAATATGCTCAAGTCTTTAAAAGAGGCATTGGTGACAAGAATGTCCCCTACACTTCATGATCCCAGGTACATATGGGCAACCATGTTGGACCCGAGGTACAAGACCTCCCTCTTTACTGAGGAAGAAGCGGAGCAGTGTAAGCATGACCTCATACAAGAGCTTGAGGTGTCTACATCTAATTCTGCAGAGACGAAGACACCTTTGTCAAATGGATGCAGTGAAATACCTGCTTCATCAAACAGCTTGGCCTCAAACAAAGAGAACCTCTGGTCTCTTATGGATGACATTAGACAGAAAATCAAGCAAGAGGAGAAACCAAAATCACTGGAGCTTGCTGTTCTTGAGTATTTGGAGGAGGACATTCTTGACCAGAGTTGTGATCCTTTAGATTATTGGAACCTAAAGAAGTTACTGTGGCCAGATCTTGCCAAAGTAGCTGTACGCTATGTGGGTTGTCCACCCAGCATTGTACCAGCAGATACACTTTTTAGCACATCAACTGTCAACTGTGCCCTGAATCAGTCCCGACCATTGCTAGAAAATTTCGAAGGACTTCTATTTTTAAAAGTCAACCTTCCTTTGATATATTTTCAGTACTGAATATtgtgttttaatattttcaaGTCTGTTTTATGCTCTGAACCTCAGCCTTGGACCACTCAAGT

Function

symbol description
zbed4 Predicted to enable DNA binding activity; metal ion binding activity; and protein dimerization activity. Predicted to be located in nucleus. Orthologous to human ZBED4 (zinc finger BED-type containing 4).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-041210-305 Predicted to enable DNA binding activity; metal ion binding activity; and protein dimerization activity. Predicted to be located in nucleus. Orthologous to human ZBED4 (zinc finger BED-type containing 4).

Ensembl:

ensembl_id ENSDARG00000024306

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055830 False 4961 mRNA 0.40 2 27112399 27129697
TCONS_00055831 True 3900 mRNA 0.42 1 27113213 27117112

Neighbor

gene id symbol gene type direction distance location
XLOC_028815 creld2 coding downstream 13114 27081972 ~ 27099285 (-)
XLOC_028814 NA coding downstream 272791 26839078 ~ 26839608 (-)
XLOC_028813 NA coding downstream 346589 26752348 ~ 26765810 (-)
XLOC_028812 NA coding downstream 690172 26417507 ~ 26422227 (-)
XLOC_028810 b4galnt3a coding downstream 699008 26390851 ~ 26413391 (-)
XLOC_028817 CR751234.1 coding upstream 11482 27141179 ~ 27141303 (-)
XLOC_028818 tafa5a coding upstream 122168 27251865 ~ 27398414 (-)
XLOC_028819 tbc1d22a coding upstream 497172 27626869 ~ 27897315 (-)
XLOC_028820 gramd4a coding upstream 932776 28062473 ~ 28161198 (-)
XLOC_028821 celsr1a coding upstream 1060316 28190013 ~ 28335184 (-)
XLOC_028811 CU137645.1 non-coding downstream 705136 26407146 ~ 26407263 (-)
XLOC_028808 NA non-coding downstream 860278 26250874 ~ 26252121 (-)
XLOC_028824 CU694442.2 non-coding upstream 1302634 28432331 ~ 28432445 (-)
XLOC_028825 FO704886.1 non-coding upstream 1412324 28542021 ~ 28542135 (-)
XLOC_028826 NA non-coding upstream 1495172 28624869 ~ 28632583 (-)
XLOC_028827 NA non-coding upstream 1589532 28719229 ~ 28728040 (-)

Expression


Co-expression Network