XLOC_028819 (tbc1d22a)


Basic Information

Item Value
gene id XLOC_028819
gene name tbc1d22a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 27626869 ~ 27897315 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055838
GCTGTTCAGCAGCCACTCATGAGTCCCTTTAACCAATCACTACTGCGTTTATGTGCGGTGGGCGGTACCAACATGGCGGCTCTCTGAGTTTGCGAAGAGAAATTGAGGTGTAAATAAACTCTTCGTGCACGACTTGCACAACTTATCAACCCCATTCTCTGAATTAATATATGAGCGAGTGCTCCGAACCCAAACGATGTCAAGTGACGGCAACAAAAAGCAGTTCTGGAAGAGAAACACAGCCAAGGTTCCTGGGAATATCCAACATGTTTACGGAGCCCAACACCCCCCATTTGATCCTCTGCTACATGCCAATTTGATGAAAGCAGGAAACAAGCCCCCATCTGCATCTACGCCAGGAAAACCAAAGAAAGCTACCACCTTCCAAGAGTTCGAGAGCATCACCAGTGACGCCTGGGACGTGGGTGACGATGACGACGAACTTCTTGCCATGGCAGCCCAAAATCTCAACATCGAAGTCGTCATGGAGACGGCCAATAAGGTGATCGAGAACCACAGCAAGCTTCAAGAAAGACGGCAGCAGCAGATGGAGAAGACGACTGAGCCTGATGAAAAGTATGGAGAAGAagtggaagaggaggaggaggagccggaggaagaggaggagcgaGAGGAAGTGGTGGAGACAACAGATGTGTCTTTTAGTTCAGATGCTCTTCCATTTGGCGATAGCAGACTGGTGAAGTCACACAGTGAAGCTCCTATTGGCTCACCTAAAGAAGTGGGTATTGAACAGGCAGCACTACACAGACAGCAGTCACTCCCGCACAGACCTGTGATTCCACTAGTGGCCCGAATGGCGGATCAGAACACGTCTGGAACTCCAGCCATGACCGAGAGAGAAGCATCAAGACTTGACAAATTTAGACAGGTCCTGGCTGGGCCTAATACTGATCTAGAGGAGCTTCGGAAGTTGAGCTGGTCTGGAATTCCACGGCAGGTGCGCCCGATCACATGGAAACTACTCTCAGGGTACCTGCCAGCTAATGCGGAGCGGAGGGAAAGCACGCTGCAGAGGAAACGGCAGGAATACTTCGGATTCATTGAGCAGTACTACGACTCCCGGAATGACGAGCACCATCAGGACACTTATAGACAGATTCACATTGACATACCGAGAACTAATCCTCTTATACCTCTCTTTCAACAAGCTTCTGTGCAAGAGATCTTCGAGCGGATTCTGTTTATCTGGGCAATACGGCATCCAGCAAGCGGCTACGTTCAGGGCATCAATGACCTTGTGACACCCTTCTTCGTTGTTTATGTATTCGAATATATCGAGGAAGAGGTGGAAAATTTCAATGTTTCCAGCTTGCAGGAAGAGGTGTTGCGGAACATCGAGGCTGACAGCTTCTGGTGCATGAGCAAGCTCCTGGATGGGATTCAGGACAACTACACCTTCGCCCAGCCTGGGATCCAGAGAAAAGTAAAGGCACTGGAGGAGCTGGTCAGCCGGATTGATGAGACTGTGCATCGCCACATGCAGCTGTATGAGGTGGAGTATTTGCAGTTCGCGTTCCGCTGGATGAACAATCTTCTTATGAGAGAACTTCCTCTGCGCTGCACCATTCGTCTGTGGGACACTTATCAGGCGGAACCTGAAGGTTTCTCTCACTTCCACTTGTATGTGTGTGCTGCCTTCTTGGTGCGATGGAGGAAAGAGATACTAGAGGAGAAAGATTTCcagGGTCTGATGATTCTGCTCCAGAACTTACCTACGATGCACTGGGGAAATGAGGAAGTTAGCGTTCTCCTAGCTGAAGCTTACCGGCTGAAGTTTGCCTTTGCTGATGCCCCTAACCATTACAAAAGATGAGGTTTGGTCCAGCACAACTATTGAATATGACGACCCCAACTGACCTCGGAGGTGTGATGCTGAACTGAAACAGtgaaagttatttttgtttgttttttttatgggaGAGGGTATGTGTACAGTGGGCTTCAACTGATCCGGGATTTTTTCCGCATTTCTATTAATATCAGCACTCCAAATGCGATGGTCAACCTGCGTTCTCGAAGGACACTAatctttgatttttcttttggAATTTAATCACAAtagatagtttttttttcccctctctatGCACTGAATCTGCGGAAATGTTCATTTAGACAGCAGGATTCCACTATACTAGGATGAGACAACAGAATGGATGCTTGGCCAATTGATTCAAGGCAATAATCAGACATTACTGAGAAAGCATGGTTTATAAGCATTCGCAGTAAGGCTGTTTGGCTTAAACGGCGCCTACGAACATTTATCGTAACTTTGGTCTACCTCAGGAAGCGGCCAGGATTCGTAGGGTTTCTATATTAGAACAGTGCCCATGAGGCTGTGAGATGGAGTCAGTAAAATCTGCCTTATTTTTGGTCTGCTTGTGTTTTTTTGAGGCACAGATTCAGTCAATGAAGGCAGCTGGAGACGCTAACCGAAGAACTGCTTCAATTTTTTGCCGTCTGTGTTACTCTCATTTTGACATCTCATTTTGATATTGATATAATAATCCATACCGACTGTATAACGCTGTCATTAATAGATGTGTTTGGGGAAAATCAGCTTCTGACTTTTGACATTTTGTCAGTATTTGAACTGTGCGCTGCTTCAATCATGTCATCAGGCTTTTAAATTTGTGTGCCAGTTCTTACAACTAAATATAAGTGAAACTGCACTTGATAAGTCTATTTTCCTTCCTTTTGTACAAGATATATTCGATAAATcagctttttttaaattcatttgtcttttttttatatactgtttACATGAACCTGTTAAGTTGTGCCTAACTCTAGAGATTAATGACATCacagatatttattttaaactcatGATCATTTAGGATGTGGCAAAGCAAATTATTTGCCTTTACAACATTCACTTCAGCGTAAACAGTGAATTCAGCAACTCTACCGCTCTCCTTTGGCTATTTGATTGGCCACAGAATTGAAAGAATTTACTGTAACTGACATTCAGTGCCTGGATAACAGAGTTTCAGTGTGAGATACGTGGGGTACTGGGAGGTTTTCTGGATAGAAAGCTTATTGACTTCAGAAACTTCAGAATGGGTTTTTAAAGAGGTGTGAGTGAGATGTTTTGAATTAAATAGCTGTGTACAGAATTGTCATGTTTTCAAAGATATGTAAatagaaaaaaagtgtaaataaatactatatatatatgatttgaaCATTCGTTGACTTGTTTAATGATTGGTTTCTTTAACTATGTTTTATTATGTCAATATGACAGATGATCAATAGCAGCAAAATCACATTTCACATATAAGAATACAATGATTCAAGACACTGTATGTAAGAATTTGTATTAATACATCACTTTTTATTGACAATATTTGAACAGCATGTAACAAAAAAACACGTTCCATAACCATCTTGGTTGTTTATAAAAACTGTAGGTTGatattttgtcctttttttcacATAACGCACAAACAAATTGCATCATCAAAAATAGGCATTCTCTGCAGTAATGTTGAGCTGTATTGCAAATCAaagtaattcatttaaaaatggaccagatttcttttttttcccaatcATCAACAGTCCAATCTTGATGACCTTGCATCAGCAATGGTGCAACTACCATGAGGACCTAGCTAAGTTATCAGCTACATATGCCTTTTTTGCAGTTGTCTGTGATAAACTGTGCATGATGACACATTGCCCTGGTCACCACTGTTACTGCTGGTGATTTGTTGCACTGCTCTCCTGCTTGTTTGCATTGTACCAATTTATAATTGGGC
>TCONS_00055839
TCTCTGAATTAATATATGAGCGAGTGCTCCGAACCCAAACGATGTCAAGTGACGGCAACAAAAAGCAGTTCTGGAAGAGAAACACAGCCAAGGTTCCTGGGAATATCCAACATGTTTACGGAGCCCAACACCCCCCATTTGATCCTCTGCTACATGCCAATTTGATGAAAGCAGGAAACAAGCCCCCATCTGCATCTACGCCAGGAAAACCAAAGAAAGCTACCACCTTCCAAGAGTTCGAGAGCATCACCAGTGACGCCTGGGACGTGGGTGACGATGACGACGAACTTCTTGCCATGGCAGCCCAAAATCTCAACATCGAAGTCGTCATGGAGACGGCCAATAAGGTGATCGAGAACCACAGCAAGCTTCAAGAAAGACGGCAGCAGCAGATGGAGAAGACGACTGAGCCTGATGAAAAGTATGGAGAAGAagtggaagaggaggaggaggagccggaggaagaggaggagcgaGAGGAAGTGGTGGAGACAACAGATGTGTCTTTTAGTTCAGATGCTCTTCCATTTGGCGATAGCAGACTGGTGAAGTCACACAGTGAAGCTCCTATTGGCTCACCTAAAGAAGTGGGTATTGAACAGGCAGCACTACACAGACAGCAGTCACTCCCGCACAGACCTGTGATTCCACTAGTGGCCCGAATGGCGGATCAGAACACGTCTGGAACTCCAGCCATGACCGAGAGAGAAGCATCAAGACTTGACAAATTTAGACAGGTCCTGGCTGGGCCTAATACTGATCTAGAGGAGCTTCGGAAGTTGAGCTGGTCTGGAATTCCACGGCAGGTGCGCCCGATCACATGGAAACTACTCTCAGGGTACCTGCCAGCTAATGCGGAGCGGAGGGAAAGCACGCTGCAGAGGAAACGGCAGGAATACTTCGGATTCATTGAGCAGTACTACGACTCCCGGAATGACGAGCACCATCAGGACACTTATAGACAGATTCACATAGATATTCCCCGGATGAGTCCGGAAAGTTTAGTTCTGCAGCCCAAGGTAACTGAGATTCACATTGACATACCGAGAACTAATCCTCTTATACCTCTCTTTCAACAAGCTTCTGTGCAAGAGATCTTCGAGCGGATTCTGTTTATCTGGGCAATACGGCATCCAGCAAGCGGCTACGTTCAGGGCATCAATGACCTTGTGACACCCTTCTTCGTTGTTTATGTATTCGAATATATCGAGGAAGAGGTGGAAAATTTCAATGTTTCCAGCTTGCAGGAAGAGGTGTTGCGGAACATCGAGGCTGACAGCTTCTGGTGCATGAGCAAGCTCCTGGATGGGATTCAGGACAACTACACCTTCGCCCAGCCTGGGATCCAGAGAAAAGTAAAGGCACTGGAGGAGCTGGTCAGCCGGATTGATGAGACTGTGCATCGCCACATGCAGCTGTATGAGGTGGAGTATTTGCAGTTCGCGTTCCGCTGGATGAACAATCTTCTTATGAGAGAACTTCCTCTGCGCTGCACCATTCGTCTGTGGGACACTTATCAGGCGGAACCTGAAGGTTTCTCTCACTTCCACTTGTATGTGTGTGCTGCCTTCTTGGTGCGATGGAGGAAAGAGATACTAGAGGAGAAAGATTTCcagGGTCTGATGATTCTGCTCCAGAACTTACCTACGATGCACTGGGGAAATGAGGAAGTTAGCGTTCTCCTAGCTGAAGCTTACCGGCTGAAGTTTGCCTTTGCTGATGCCCCTAACCATTACAAAAGATGAGGTTTGGTCCAGCACAACTATTGAATATGACGACCCCAACTGACCTCGGAGGTGTGATGCTGAACTGAAACAGtgaaagttatttttgtttgttttttttatgggaGAGGGTATGTGTACAGTGGGCTTCAACTGATCCGGGATTTTTTCCGCATTTCTATTAATATCAGCACTCCAAATGCGATGGTCAACCTGCGTTCTCGAAGGACACTAatctttgatttttcttttggAATTTAATCACAAtagatagtttttttttcccctctctatGCACTGAATCTGCGGAAATGTTCATTTAGACAGCAGGATTCCACTATACTAGGATGAGACAACAGAATGGATGCTTGGCCAATTGATTCAAGGCAATAATCAGACATTACTGAGAAAGCATGGTTTATAAGCATTCGCAGTAAGGCTGTTTGGCTTAAACGGCGCCTACGAACATTTATCGTAACTTTGGTCTACCTCAGGAAGCGGCCAGGATTCGTAGGGTTTCTATATTAGAACAGTGCCCATGAGGCTGTGAGATGGAGTCAGTAAAATCTGCCTTATTTTTGGTCTGCTTGTGTTTTTTTGAGGCACAGATTCAGTCAATGAAGGCAGCTGGAGACGCTAACCGAAGAACTGCTTCAATTTTTTGCCGTCTGTGTTACTCTCATTTTGACATCTCATTTTGATATTGATATAATAATCCATACCGACTGTATAACGCTGTCATTAATAGATGTGTTTGGGGAAAATCAGCTTCTGACTTTTGACATTTTGTCAGTATTTGAACTGTGCGCTGCTTCAATCATGTCATCAGGCTTTTAAATTTGTGTGCCAGTTCTTACAACTAAATATAAGTGAAACTGCACTTGATAAGTCTATTTTCCTTCCTTTTGTACAAGATATATTCGATAAATcagctttttttaaattcatttgtcttttttttatatactgtttACATGAACCTGTTAAGTTGTGCCTAACTCTAGAGATTAATGACATCacagatatttattttaaactcatGATCATTTAGGATGTGGCAAAGCAAATTATTTGCCTTTACAACATTCACTTCAGCGTAAACAGTGAATTCAGCAACTCTACCGCTCTCCTTTGGCTATTTGATTGGCCACAGAATTGAAAGAATTTACTGTAACTGACATTCAGTGCCTGGATAACAGAGTTTCAGTGTGAGATACGTGGGGTACTGGGAGGTTTTCTGGATAGAAAGCTTATTGACTTCAGAAACTTCAGAATGGGTTTTTAAAGAGGTGTGAGTGAGATGTTTTGAATTAAATAGCTGTGTACAGAATTGTCATGTTTTCAAAGATATGTAAatagaaaaaaagtgtaaataaatactatatatat
>TCONS_00055840
GCGTTTATGTGCGGTGGGCGGTACCAACATGGCGGCTCTCTGAGTTTGCGAAGAGAAATTGAGGTGTAAATAAACTCTTCGTGCACGACTTGCACAACTTATCAACCCCATTCTCTGAATTAATATATGAGCGAGTGCTCCGAACCCAAACGATGTCAAGTGACGGCAACAAAAAGCAGTTCTGGAAGAGAAACACAGCCAAGGTTCCTGGGAATATCCAACATGTTTACGGAGCCCAACACCCCCCATTTGATCCTCTGCTACATGCCAATTTGATGAAAGCAGGAAACAAGCCCCCATCTGCATCTACGCCAGGAAAACCAAAGAAAGCTACCACCTTCCAAGAGTTCGAGAGCATCACCAGTGACGCCTGGGACGTGGGTGACGATGACGACGAACTTCTTGCCATGGCAGCCCAAAATCTCAACATCGAAGTCGTCATGGAGACGGCCAATAAGGTGATCGAGAACCACAGCAAGCTTCAAGAAAGACGGCAGCAGCAGATGGAGAAGACGACTGAGCCTGATGAAAAGTATGGAGAAGAagtggaagaggaggaggaggagccggaggaagaggaggagcgaGAGGAAGTGGTGGAGACAACAGATGTGTCTTTTAGTTCAGATGCTCTTCCATTTGGCGATAGCAGACTGGTGAAGTCACACAGTGAAGCTCCTATTGGCTCACCTAAAGAAGTGGGTATTGAACAGGCAGCACTACACAGACAGCAGTCACTCCCGCACAGACCTGTGATTCCACTAGTGGCCCGAATGGCGGATCAGAACACGTCTGGAACTCCAGCCATGACCGAGAGAGAAGCATCAAGACTTGACAAATTTAGACAGGTCCTGGCTGGGCCTAATACTGATCTAGAGGAGCTTCGGAAGTTGAGCTGGTCTGGAATTCCACGGCAGGTGCGCCCGATCACATGGAAACTACTCTCAGGGTACCTGCCAGCTAATGCGGAGCGGAGGGAAAGCACGCTGCAGAGGAAACGGCAGGAATACTTCGGATTCATTGAGCAGTACTACGACTCCCGGAATGACGAGCACCATCAGGACACTTATAGACAGATTCACATTGACATACCGAGAACTAATCCTCTTATACCTCTCTTTCAACAAGCTTCTGTGCAAGAGATCTTCGAGCGGATTCTGTTTATCTGGGCAATACGGCATCCAGCAAGCGGCTACGTTCAGGGCATCAATGACCTTGTGACACCCTTCTTCGTTGTTTATGTATTCGAATATATCGAGGAAGAGGTGGAAAATTTCAATGTTTCCAGCTTGCAGGAAGAGGTGTTGCGGAACATCGAGGCTGACAGCTTCTGGTGCATGAGCAAGCTCCTGGATGGGATTCAGGACAACTACACCTTCGCCCAGCCTGGGATCCAGAGAAAAGTAAAGGCACTGGAGGAGCTGGTCAGCCGGATTGATGAGACTGTGCATCGCCACATGCAGCTGTATGAGGTGGAGTATTTGCAGTTCGCGTTCCGCTGGATGAACAATCTTCTTATGAGAGAACTTCCTCTGCGCTGCACCATTCGTCTGTGGGACACTTATCAGGTAAGAAGACACTCCACAGTCTTTGTTTATGCTTTTTTACTGACATATAGTCATACTTGACCCCTGTTTGACTTAGGTAGCAAATAGCATAGCTTATGACAGGACAAAATATGACATTACACAACACTTAGCAGGTAAGAGACCCTCAACAGACTTTGTGGGGTCAGTTACTCCCAATTTCACATGGGGTATCAGGGCGTATCTGAaattggggctgacgcgatcatcatagcagcatcagccaattaAATTAATCCGCAAtgggctactgtctgagctgtttccaattgtt

Function

symbol description
tbc1d22a Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Orthologous to human TBC1D22A (TBC1 domain family member 22A).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0090630 activation of GTPase activity biological_process
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-144 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Orthologous to human TBC1D22A (TBC1 domain family member 22A).

Ensembl:

ensembl_id ENSDARG00000045510

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055838 False 3794 mRNA 0.43 13 27626869 27897315
TCONS_00055839 False 3113 mRNA 0.44 14 27627458 27897160
TCONS_00055840 True 1860 mRNA 0.49 11 27713442 27897271

Neighbor

gene id symbol gene type direction distance location
XLOC_028818 tafa5a coding downstream 228455 27251865 ~ 27398414 (-)
XLOC_028817 CR751234.1 coding downstream 485566 27141179 ~ 27141303 (-)
XLOC_028816 zbed4 coding downstream 497172 27112399 ~ 27129697 (-)
XLOC_028815 creld2 coding downstream 527584 27081972 ~ 27099285 (-)
XLOC_028814 NA coding downstream 787261 26839078 ~ 26839608 (-)
XLOC_028820 gramd4a coding upstream 165158 28062473 ~ 28161198 (-)
XLOC_028821 celsr1a coding upstream 292698 28190013 ~ 28335184 (-)
XLOC_028822 trmu coding upstream 441327 28338642 ~ 28353538 (-)
XLOC_028823 tprkb coding upstream 474417 28371732 ~ 28375127 (-)
XLOC_028824 CU694442.2 coding upstream 535016 28432331 ~ 28432445 (-)
XLOC_028813 NA non-coding downstream 861059 26752348 ~ 26765810 (-)
XLOC_028812 NA non-coding downstream 1204642 26417507 ~ 26422227 (-)
XLOC_028811 CU137645.1 non-coding downstream 1219606 26407146 ~ 26407263 (-)
XLOC_028825 FO704886.1 non-coding upstream 644706 28542021 ~ 28542135 (-)
XLOC_028826 NA non-coding upstream 727554 28624869 ~ 28632583 (-)
XLOC_028827 NA non-coding upstream 821914 28719229 ~ 28728040 (-)
XLOC_028828 NA non-coding upstream 856627 28753942 ~ 28755703 (-)

Expression


Co-expression Network