XLOC_002882 (ska2)


Basic Information

Item Value
gene id XLOC_002882
gene name ska2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 33367355 ~ 33379850 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005328
cgacggacaatttagctcacccaacaTATATTTCCCACTACACATATTCAAAGAGTAACGTATGCGGTACAGTCTCACTCTGAACAAGTGCGTTAGAATTCCATCCCGCCCCTTTTCCTCTTTCTCCTTCCAAACGGACCAATCACCATCCCCACTCTGTgacagctgaccaatcagagacgGTCTTGCGTTCTGCTGCGAGCTTTATATTTCCGGGGCTGCTTCAGGAATGTAAACTATTCAACATGGAGACAGTTGATAAGCTGGAGGCGATGttccagaaagcagaagCTGATATCGAATATGTGGAAAAGCGGCTTAAATTTGACTTCATGGCCAGTGCGCGAGAAGCTGGCACATTTGAGGGAAACCCCGTTGAGTTGTTGGAGAATCTGTCGGCGATCAAAGCACGTCATGCGGCTCTGTGTGCACAGGTGGAAGAGATCGCGGCAGAACAGAAACGATCCATGGACTCCATACGAGCTCATCTGGACACCACAGTGCAGCTGGTTCAACAACTGCAGAACACGGCAGATGTGCAGGTTCCACCACTGACAGAAGAAGAACAAGAAGCAAGAGATGCTCTCTGCTCATCTGTTGCTGCTTTAAATGTAGAGGCCATGCCTACATCAGAACCTCAATCTCAAGCACAGTCTGAAGCACAAAATGTCCATGAAGATGTGTCTGAAAAGACATTTGAGACTGTCCCACGAAGTGTACGTGGTAACTTGAAGCTGAAAGACCTCAACGCTCTTTATAAGCAGTTATTTGAGCACTTCTCCGATAAGAGCAGGGGGCCGATAAGCACTCAGAGGATGAAGAAGTTAAACATGAAAGTCAACGATTCTGCACTGAAAACGTTACAGCACCTTAAGCTCATTGAACTTGACAAAAAAGGACTTGTGTCATTGCTGGCCAACGACTGAAAAATGGACCAAAAAGAGTACAACGCTTCCAGTTCCTTCCACATATctgctgattggaccaatgaagGGCACTAGAAAGCATTTCAAAAATACTGTGTTCACAACCAGTACAATCAAGActgcatatgaaaaaaaaaaatgaaaattcttttttGGAAGAAACATATTTTGGCCCCTTCACGCtgctcaatttaaattatatcaTGACCTGTTGTAGAATCATTAGACTTGTACAAGAAAGAAAGTGTACAGCAttcaagtttatatatattttttgtaaagtgAAACCGCTGTTTGTGTAACTGCAGACAGATGAAGGAGATGCCATTTGAACATGAATCAGTGTGTTCATTTTTCCAGGTCATGTATGCAATAAATTCTCTTTTTGTATGCATGTgccttttattttaaagcattacaCAACATGAGACACTTGCTTTAGCATTAATCTCAGAACATCAAATGAACTGTCAAAACAAGCATGACCTTAAACTGTTGATGAACTTAAGTTAATAACATTTTGAAagctaatttatttgtatttttattatttgtgaagGATATTTTTCATTTAACAGTAAATTTAACAAAAGGAACAAGAACGTATGCCTTAAGCtgattcagatgcaaaaaaacggATAAGGATATCTGAGAGATTGTCTCCTCTTTAACAGTGAACTTCGACTGATGTCTGTTCCAGGActctgaagataaaaaaaaaattataaaagttaaCTTTGGACTATTTTTAATCTGGAAAGCcatcataattttttaaattggTAATCTATTAACCCATTTCCcctgagtggtacggttcggtacgctttcatggccatttccactgtcaacgGGTATCAAAAAGcgaactgtactgtaccactttttgggtaccctttgcaaagggtacctagcaagacaaaagagtaccaaaaggcggagctaggcGCACAGCTAAACACTATTGGATTGAAGAAATGCGTCACTAGCTCGTGGACAAACAGGAGAATGAAAATAAAGGATGCACCATTTGAAATACACAGCCGGGACATTACATCGTAATCATATATACATTATAACAACcaatggtcgacccgagctcaaacaaaccttgtcgtcatctttatgaacagccacaaagccaagaagaaaatcaGCTGTGTCCTGCttttgttttacgagcccgtcaAAAAGcacgagcggtttcactttctccaaagAGCTCACCGCACtactatatttgaaataataaaaaaaaacttctttagctgatgataataacatgcgtgtgattattgaagtgcttctggcaaccgatcctttcagaaacagtcAAACGCGAAACTGAggcatgaaaaaacaaaggagaagctggaaaagcaaaggagcaaatgattctttcagcaacctaaaccatgaccaaactgccatgtttaactattattgtcaccttttggactattatgaactctggaatgacggaattactttctaacaagaggtcacatgtgctggtgaagattaaagagatacagatgagaggtttgcactgactgggctatagtttgtgttgtttttgaagccaaataaggactaaatgtatgctgtgtgtggtttatctgtaattggtaacatatcggagactaaGGATCTTTATGAGCTTATATATGTtgaatttatttcttttatataattgcagacattacagaaGGCTATTTCAccctatcattgatctgcagttatataaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataatatacacttatatgtgtataaaacatttgttctgtgagaagtgcttctcgtatgatatgtgaacgacccgtagacatttcctcaagcgagaatgacgtcgTCTGAatctttctgtcgtacaccacacccaccaattGATACCCTTATGGCAGTGTAAATGCAAGCCTGATAGAGGTGACCCGTACAGTACCACTcaatggaaacgggccattagtgtATCCCAACCTATCTATTCCTTTAATAAACAGTAGGATTATTGGCATTGTGTTAATCAAGATGTTTTATGCTTCTTGCGCACCTGTTAGGATGGTTCTCCTGATCAGCTGCCTCCGTCTTCTCTTCCAGCTCATTTATATTGTCTACAGAGAAAAACCACAACTGTTAAACACTGCATTTGGCTTTTGAGGCTAAAAACGACCTCATTACATCTCTCCACTCACCTGCTGTCTAGATGTAGTCTCTCACATCTCCCTCTCCTTTAATATCAGACTGACACAGCCTAGACCAAGTGTAGATCATTGTTTGATATTAttaaaagagatagttcaccaaaaatgaatttctgtcttcattgactcatccttcacttgttccaaatgtGTTTGAGAGGgtgtcaattttcatttttggtgaagtGTGAAATATGACAGGTTTATacaggatttctgcaggtttcaccaagtcaaattaatgatttttaaagaCCAGTATGAATTAAACTTCAAACTTGCTAACAGGGCTAAACAATATATAGTTTGaacatcgatatcgcaatatgtgtagctgcaatagtcacatcgcaggattagatgGTTTATGAAAG

Function

symbol description
ska2 Predicted to enable microtubule binding activity. Predicted to be involved in several processes, including chromosome segregation; mitotic cell cycle; and regulation of microtubule polymerization or depolymerization. Predicted to be located in cytoplasm; kinetochore; and microtubule. Predicted to be part of outer kinetochore. Predicted to be active in spindle microtubule. Orthologous to human SKA2 (spindle and kinetochore associated complex subunit 2).

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0007059 chromosome segregation biological_process
GO:0031110 regulation of microtubule polymerization or depolymerization biological_process
GO:0051301 cell division biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0000776 kinetochore cellular_component
GO:0000940 condensed chromosome outer kinetochore cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005874 microtubule cellular_component
GO:0005876 spindle microtubule cellular_component
GO:0005694 chromosome cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041008-202 Predicted to enable microtubule binding activity. Predicted to be involved in several processes, including chromosome segregation; mitotic cell cycle; and regulation of microtubule polymerization or depolymerization. Predicted to be located in cytoplasm; kinetochore; and microtubule. Predicted to be part of outer kinetochore. Predicted to be active in spindle microtubule. Orthologous to human SKA2 (spindle and kinetochore associated complex subunit 2).

Ensembl:

ensembl_id ENSDARG00000114038

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005328 True 3560 mRNA 0.39 7 33367355 33379850

Neighbor

gene id symbol gene type direction distance location
XLOC_002881 c2cd2 coding downstream 24111 33305978 ~ 33343244 (-)
XLOC_002880 PRDM15 coding downstream 69491 33269371 ~ 33297864 (-)
XLOC_002879 tbl2 coding downstream 101789 33253952 ~ 33265566 (-)
XLOC_002878 bcl7ba coding downstream 115479 33240410 ~ 33251876 (-)
XLOC_002877 NA coding downstream 202782 33158589 ~ 33164573 (-)
XLOC_002886 il2rga coding upstream 164479 33544329 ~ 33557299 (-)
XLOC_002887 si:dkey-18a10.3 coding upstream 181717 33561567 ~ 33572441 (-)
XLOC_002888 eva1c coding upstream 200435 33580285 ~ 33588310 (-)
XLOC_002889 hunk coding upstream 234527 33614377 ~ 33621739 (-)
XLOC_002890 NA coding upstream 283315 33663165 ~ 33664789 (-)
XLOC_002875 NA non-coding downstream 470411 32894997 ~ 32896944 (-)
XLOC_002871 NA non-coding downstream 587065 32779880 ~ 32780290 (-)
XLOC_002870 NA non-coding downstream 689110 32676810 ~ 32678245 (-)
XLOC_002867 NA non-coding downstream 775893 32584685 ~ 32591462 (-)
XLOC_002891 BX569785.1 non-coding upstream 496281 33876131 ~ 33880364 (-)
XLOC_002900 NA non-coding upstream 816932 34196782 ~ 34198566 (-)
XLOC_002902 BX510654.1 non-coding upstream 947412 34327262 ~ 34327394 (-)
XLOC_002906 CT573139.2 non-coding upstream 1571210 34951060 ~ 34959178 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_16123390_16127834 SKA2 coding CI01000304 null 16123162 ~ 16128334 (-)
bowfin (Amia calva) AMCG00005426 NA coding CM030142.1 CM030142.1 1480176 ~ 1485828 (-)