XLOC_028823 (tprkb)


Basic Information

Item Value
gene id XLOC_028823
gene name tprkb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 28371732 ~ 28375127 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055847
attattattgttcCGTCACACCGGGCAGAGCATGCAGTCAAAATAAAGTTGATGTTGTAGTAGGTTAGAGACATTAAAACATTTGCGATGTATCTCACACAGGATTTAGAACTGTTTCATGAATACACGGTGACTCAGCTGCTCTTCAAAGATGTGAAAAATGCGACTGAGCTCAGGAAAATGGCAGTAAATGGAGAAATAAAAGGCGCCTTGATCAATCCATCAATGgttGTGGATGCATTCCAGATCCTGGTGGCAACAAATAAAGCAGTTCACCTTCATAAAATCGGGAAAATGAAAACCAGAAGCCTTTACTCTGAAATCATTTTCAATCTTTCACCAACAAACAATATATCCGAAGCTTTCAAAAGGTTCGGAATCTCCGACAGCGACACCGCGGTTCATATTGTGTTAGTACACAATAAAGAAGAGACCCTTAACATTGATGACATCATCTCAAAGGTGGATGGACAGCAAATTGATGTTGGTCAAGTGTCCGAAATGACTGatactgcaaaaataaaaaagCTCTACAAAATCACACCACAAGAGGATAAGTGTGGCACTCTTTTGGACGCTGTTGTTTGCAGGATGGCAATTAAAGATGTGGCCTAGATAATGTGTTGGTTATTTCAATATAAACAATTGCACTTGCTCTGcctatatgtttaaataaaaactagGGCTGTTTAACCATTAATCTTGACTAAATGAaaacaagataaaagtttgtattagCATAGTGTTTATAAAGGTACACACGTGTATATACTTAACAAtaagtatttataattttatataaacgttccatatatatatgtatatgtatgtgtgtatttatacatacataataaatacacacaatacACAACATTATTAACCtaatgtaaacttttattttgtctgCCATTAGTTACAATTTATAAATTCACATTTCATTTAAATCATCTTGGCTATATCAATGTATATTTACTATTCATAATTTTAGAGGTGAAATTGTGTACAAAAACTGTATCACCTTCTTTTTGTAAATAAAGgagaaatataaa
>TCONS_00055848
tatataaatacattttaaattttattatatcttAATGAATGACTTTCCAAATAGAGGTATTTAAATAAtatggtgaaattatattcatatagcGATATATTGCAGGGAGAAAAACATTGCAATGTGAAATATGTTTTTATCTTGCAGCCATGTGCGGTACAAACAACAATAACTCACCTCAGTAAACTtcccttcacagtatttctgTGCCTGAGGGACGTGGAATATTTCATCCATGTACGGGTCTCTTTGTTCCCGTGTGAttttggagaacagcaggcatgaaatGAGAAAGTTGACGCTGCACAGAGCTGTGAAGATATAAACCTCAAATCTCTCCATCCTTATTCAGACAAACTCGACCTTTGATGAAGCACGAAATGAGTGATATATGAGGAGGATTAAGATGGATTTAGAACTGTTTCATGAATACACGGTGACTCAGCTGCTCTTCAAAGATGTGAAAAATGCGACTGAGCTCAGGAAAATGGCAGTAAATGGAGAAATAAAAGGCGCCTTGATCAATCCATCAATGgttGTGGATGCATTCCAGATCCTGGTGGCAACAAATAAAGCAGTTCACCTTCATAAAATCGGGAAAATGAAAACCAGAAGCCTTTACTCTGAAATCATTTTCAATCTTTCACCAACAAACAATATATCCGAAGCTTTCAAAAGGTTCGGAATCTCCGACAGCGACACCGCGGTTCATATTGTGTTAGTACACAATAAAGAAGAGACCCTTAACATTGATGACATCATCTCAAAGGTGGATGGACAGCAAATTGATGTTGGTCAAGTGTCCGAAATGACTGatactgcaaaaataaaaaagCTCTACAAAATCACACCACAAGAGGATAAGTGTGGCACTCTTTTGGACGCTGTTGTTTGCAGGATGGCAATTAAAGATGTGGCCTAG

Function

symbol description
tprkb Predicted to be involved in tRNA threonylcarbamoyladenosine modification and telomere maintenance via recombination. Predicted to act upstream of or within tRNA processing. Predicted to be located in cytoplasm. Predicted to be part of EKC/KEOPS complex. Predicted to be active in cytosol and nucleus. Human ortholog(s) of this gene implicated in Galloway-Mowat syndrome 5. Orthologous to human TPRKB (TP53RK binding protein).

GO:

id name namespace
GO:0002949 tRNA threonylcarbamoyladenosine modification biological_process
GO:0008033 tRNA processing biological_process
GO:0005829 cytosol cellular_component
GO:0000408 EKC/KEOPS complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03016 Transfer RNA biogenesis

ZFIN:

id description
ZDB-GENE-041114-68 Predicted to be involved in tRNA threonylcarbamoyladenosine modification and telomere maintenance via recombination. Predicted to act upstream of or within tRNA processing. Predicted to be located in cytoplasm. Predicted to be part of EKC/KEOPS complex. Predicted to be active in cytosol and nucleus. Human ortholog(s) of this gene implicated in Galloway-Mowat syndrome 5. Orthologous to human TPRKB (TP53RK binding protein).

Ensembl:

ensembl_id ENSDARG00000014941

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055847 False 1049 mRNA 0.33 4 28371732 28373909
TCONS_00055848 True 922 mRNA 0.38 5 28372166 28375127

Neighbor

gene id symbol gene type direction distance location
XLOC_028822 trmu coding downstream 18194 28338642 ~ 28353538 (-)
XLOC_028821 celsr1a coding downstream 36548 28190013 ~ 28335184 (-)
XLOC_028820 gramd4a coding downstream 210534 28062473 ~ 28161198 (-)
XLOC_028819 tbc1d22a coding downstream 474417 27626869 ~ 27897315 (-)
XLOC_028818 tafa5a coding downstream 973318 27251865 ~ 27398414 (-)
XLOC_028824 CU694442.2 coding upstream 57204 28432331 ~ 28432445 (-)
XLOC_028825 FO704886.1 coding upstream 166894 28542021 ~ 28542135 (-)
XLOC_028826 NA coding upstream 249742 28624869 ~ 28632583 (-)
XLOC_028827 NA coding upstream 344102 28719229 ~ 28728040 (-)
XLOC_028828 NA coding upstream 378815 28753942 ~ 28755703 (-)
XLOC_028817 CR751234.1 non-coding downstream 1230429 27141179 ~ 27141303 (-)
XLOC_028814 NA non-coding downstream 1532124 26839078 ~ 26839608 (-)
XLOC_028813 NA non-coding downstream 1605922 26752348 ~ 26765810 (-)
XLOC_028812 NA non-coding downstream 1949505 26417507 ~ 26422227 (-)
XLOC_028811 CU137645.1 non-coding downstream 1964469 26407146 ~ 26407263 (-)

Expression


Co-expression Network