XLOC_028826


Basic Information

Item Value
gene id XLOC_028826
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 28624869 ~ 28632583 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058221
GAGGATAAGTAAATGACAACTTTCTTTTTTAGACAACTGATGAggaaagcctcattcacactacaagcaaCTCACAGAGGCAAAGTGACAAGCGACCATTCATTTCAACAGAGAGCGTGCAACTTCCAGTGACCTCCGTCTACTCAAGCGACAGCGATCGTTGGCAACAAGGTGGGCGTGTCAAGGGACATGGCAGCGTTGAGAATGCTTAaactttatgcaaataaagagcgactttcttgagcgacaacCAATGGGAAcaccagtagagctcatgtgatcctctctcagctcgctcagaggctGGTTGTATTAGTGCTgtatagacctacacagacctgaaTTTGAAGCAGGTCGCCAACCAAAGCGACAGGCAGCTGCGAAGTCGCTGCTATTCTGAATAAGGCAAAAGGCagtgaaatgaataaatattggaCTATTGATAGTCATAAAGGAGATCACCTCGAATCTTCATCCAAAAGAAACAGTGAATGTGGCTGTGGTGTTAGAGGAAGGCGTTGTACGATGGCCTGAGTTATGTCAGATGACTTTGCTTTGCTAATAGGGTTTCTTCTTGCCCTGAATATCACTTATCTCAAGGAAATCCAATATACATTTCACATCCTCCAAAAAGATCCTGAAAATTGGTGGCTCTGTGATTCTTACTCTGTGAACTTGCAGTTGAACTTGAAGTGTTTAGTGGATTTTGCTCACCCATGCTCAAACTTATTGATAATCATGTTGTTCATTTAACTTTAAGATTAAGCAACTCATTATATTTGATTGAGATATATTTCTTAAAGAAAAGGGTATCATTTGTTGGATGATAAGCAACTTTATTGTAAGTGATTATGTTTTTCTTGTTCTCGCATTACACTTCATATTACACAATAGCAGACATTCTGTTACACACACTCTATATCAACTCTGTCTGCTACAATTGCTGTTTAACAAAAAATCAACAAGTCAGAAGTCTCAAGAAACACTAAAATGCAGTTCTTAAACAGCATTAAAATGAaccttttcaaatgttttttcgTCTATTCAACATTTTAAAGGCTTACAACAattcataatattttataataaaaagtgTGTTTACAATTGTTCTGCAACATATTCAAATAGACATTCTGTTACAGAAATTCTGTACAAACTCGTGTTGTGTTGAACTGCAATTCTAGCAGACTGTTTTATACGTAACTCAAAGAGAGTGATGTGAATTGTTTAATATGAAGTGTAATGCGAGAACAAGAATCACCACTAACATTAAAGTTGCTTATCATCAAACACATTTTCTCCTTTTCATTAAGAGTAAGCAACAAGTTACACTGGATTGAGATTTCTTTCACTTTCTGGAAAATGGGCCGGTCATGTACAATTCGATGATGGAGGCATCGAGATCTGAAAGAAAAAGGACTGATaaacaacaaagaaaagaaaaactattGTATGAATCTCTGGGAAAGTGAAAAAAAAGACTTTGGCAAAAGGTTGGAGTGATATCGAAGAAAAGTAAGGAAAAACATTAAGCGAAGATCTGGGAAAAACTATGTGAATTTCAAAGCGACAACACTAGCTATGTTTGAAAGAAAGGCAATACCTGACAGATCCCAGTAAAGCAATCTGAGAGACTGGTAAAACTTCTTGACTTGATTCACTGATGATAGACATTTAAATTGTTTGAAGGAAGAATGTTATTTAATCAGACTGATCAACGACACAAGATAAATGATTAAAGCACACTCGATCACACTCGATTAAACAAGACTCGAGTCATTGAGTAACATACTGGAAGGAAGACATAAAGAGATTCTAATTTATACACTTAAAATCCCTTGCTATAATTAGTAGAAATATTTAACTTGAAAACGTAGccaaataaaaatacaagaatATAATATTTCCAGAAATGGGCGCTGAatattttcattaacattttttgTGCAATAGGCAAGGCATGGAGGGGCCCTTTAGAGAAGGAAGGCTTTCCCTTcactttaaaaatttatttaacactTCATGGTTTGGAGAccttttttgttatgttttttaagTGGTTCAAGAtattcatgtttgtgtttttcattttCCGGTCACAGTGATCTTCGCAATAACATCTGATTATAGTATATGCAAAAACAGGAATATAGAGTAATTACTTTGAATATTAATGGGTTACTAAATTAATGGGCTACCAATAATAAAAACTATGTGAATTTCAAAGTGACAACACTAGCTCTGTTTGAAAGAAAGGCAAAACCTGACAGATCCTAACAAAGCATTCTGAGAGACTGGTAAAACTTCTTGAATATGTTTTTACCAGTGTAGAATATGTTTAAAGGGCatctaggttaccccttttttcagatttaatataagtcttttgcgtctctagaatgtgtatataaagtttcagatcaaaatacccatcagatttttcattataccttttacaagatgctgttttatactgatttccagcagggggtggttttgtcgaactgcgcctttaagacgagtctttcccgcccactatttctacatgcctcctccctcagctgacttaaaggaagaaggtctcaggTAGCGTTtttgagatactacagtaagaactaacctttactaatcagtattgtgaacacaCGCACACCACAGATgacacgcacgcacg
>TCONS_00057359
attttttttttttttggacaaaaacAACTCCAGATGGCTTTATAATAAACTTAaacgttaattaaaaaaaataataaagttccTACTTTACTCTTACGCACATTGGCTCACTGAGGTgtctaacctacaatatgctctttcAGACCAAACATTTTCACATGTAACGGGCAGACTTTAGTTTGCCTTAGTAAAGCATTGAGTTTGACATTAATGCTCAATATTGCCCCTGTCACAGCTTGTGACCACTAGTTCACAGGTTTTAAACCATGTATTTCCTTGCAGAGCTCAAAACAATGTAAAAGAGCTGTTGTCCTGCTTGGCCTTCATTATTGCAGGAAAGTAGTCACCATCAAGTTCATCAAAACTTGTGAgACAACTGATGAggaaagcctcattcacactacaagcaaCTCACAGAGGCAAAGTGACAAGCGACCATTCATTTCAACAGAGAGCGTGCAACTTCCAGTGACCTCCGTCTACTCAAGCGACAGCGATCGTTGGCAACAAGGTGGGCGTGTCAAGGGACATGGCAGCGTTGAGAATGCTTAaactttatgcaaataaagagcgactttcttgagcgacaacCAATGGGAAcaccagtagagctcatgtgatcctctctcagctcgctcagaggctGGTTGTATTAGTGCTgtatagacctacacagacctgaaTTTGAAGCAGGTCGCCAACCAAAGCGACAGGCAGCTGCGAAGTCGCTGCTATTCTGAATAAGGCAAAAGGCagtgaaatgaataaatattggaCTATTGATAGTCATAAAGGAGATCACCTCGAATCTTCATCCAAAAGAAACAGTGAATGTGGCTGTGGTGTTAGAGGAAGGCGTTGTACGATGGCCTGAGTTATGTCAGATGACTTTGCTTTGCTAATAGGGTTTCTTCTTGCCCTGAATATCACTTATCTCAAGGAAATCCAATATACATTTCACATCCTCCAAAAAGATCCTGAAAATTGGTGGCTCTGTGATTCTTACTCTGTGAACTTGCAGTTGAACTTGAAGTGTTTAGTGGATTTTGCTCACCCATGCTCAAACTTATTGATAATCATGTTGTTCATTTAACTTTAAGATTAAGCAACTCATTATATTTGATTGAGATATATTTCTTAAAGAAAAGGGTATCATTTGTTGGATGATAAGCAACTTTATTGTAAGTGATTATGTTTTTCTTGTTCTCGCATTACACTTCATATTACACAATAGCAGACATTCTGTTACACACACTCTATATCAACTCTGTCTGCTACAATTGCTGTTTAACAAAAAATCAACAAGTCAGAAGTCTCAAGAAACACTAAAATGCAGTTCTTAAACAGCATTAAAATGAaccttttcaaatgttttttcgTCTATTCAACATTTTAAAGGCTTACAACAattcataatattttataataaaaagtgTGTTTACAATTGTTCTGCAACATATTCAAATAGACATTCTGTTACAGAAATTCTGTACAAACTCGTGTTGTGTTGAACTGCAATTCTAGCAGACTGTTTTATACGTAACTCAAAGAGAGTGATGTGAATTGTTTAATATGAAGTGTAATGCGAGAACAAGAATCACCACTAACATTAAAGTTGCTTATCATCAAACACATTTTCTCCTTTTCATTAAGAGTAAGCAACAAGTTACACTGGATTGAGATTTCTTTCACTTTCTGGAAAATGGGCCGGTCATGTACAATTCGATGATGGAGGCATCGAGATCTGAAAGAAAAAGGACTGATaaacaacaaagaaaagaaaaactattGTATGAATCTCTGGGAAAGTGAAAAAAAAGACTTTGGCAAAAGGTTGGAGTGATATCGAAGAAAAGTAAGGAAAAACATTAAGCGAAGATCTGGGAAAAACTATGTGAATTTCAAAGCGACAACACTAGCTATGTTTGAAAGAAAGGCAATACCTGACAGATCCCAGTAAAGCAATCTGAGAGACTGGTAAAACTTCTTGACTTGATTCACTGATGATAGACATTTAAATTGTTTGAAGGAAGAATGTTATTTAATCAGACTGATCAACGACACAAGATAAATGATTAAAGCACACTCGATCACACTCGATTAAACAAGACTCGAGTCATTGAGTAACATACTGGAAGGAAGACATAAAGAGATTCTAATTTATACACTTAAAATCCCTTGCTATAATTAGTAGAAATATTTAACTTGAAAACGTAGccaaataaaaatacaagaatATAATATTTCCAGAAATGGGCGCTGAatattttcattaacattttttgTGCAATAGGCAAGGCATGGAGGGGCCCTTTAGAGAAGGAAGGCTTTCCCTTcactttaaaaatttatttaacactTCATGGTTTGGAGAccttttttgttatgttttttaagTGGTTCAAGAtattcatgtttgtgtttttcattttCCGGTCACAGTGATCTTCGCAATAACATCTGATTATAGTATATGCAAAAACAGGAATATAGAGTAATTACTTTGAATATTAATGGGTTACTAAATTAATGGGCTACCAATAATAAAAACTATGTGAATTTCAAAGTGACAACACTAGCTCTGTTTGAAAGAAAGGCAAAACCTGACAGATCCTAACAAAGCATTCTGAGAGACTGGTAAAACTTCTTGAATATGTTTTTACCAGTGTAGAATATGTTTAAAGGGCatctaggttaccccttttttcagatttaatataagtcttttgcgtctctagaatgtgtatataaagtttcagatcaaaatacccatcagatttttcattataccttttacaagatgctgttttatactgatttccagcagggggtggttttgtcgaactgcgcctttaagacgagtctttcccgcccactatttctacatgcctcctccctcagctgacttaaaggaagaaggtctcaggTAGCGTTtttgagatactacagtaagaactaacctttactaatcagtattgtgaacacaCGCACACCACAGATgacacgcacgcacg
>TCONS_00058222
ACCGTTGAAACCTGCCATTATACGACACCTTGCAACCTAACCCCGTCACACGAGAGGGAGCTTTCTCAGCCTCAACGCCCACCATAAACAGGGGAGCAAACTTGTCACCTTTCATTCTGAAATTATGTTGTTGGAATCACATGTTTTGGGAATCACAGGAACAGTGCAGATCTGTAAAACACAGTTAGGAGAAGGCAGGTCTCATATCGTAAAGGCAATATAAAGGCTAGgataaaaatacatgtaaaagaAACTCTGTATCAATGCAAATGTGTGACTGTCCCTCTTTGTTTCACAAGCTTTTAAACCAATGATCAGGGCAGCTTCAGTCACGCCAACCAGTTCTGTCCAAACCAGCTGCGGGTCATGCTCACCGTAAACAAACTGGATTGCGGGCATGCAGAGAGATGGCGTCAGACTTTTGCCAGCTGTTTGCTAATATGATGCAGATTACACAGAAATAAAGAGGCCCAACTTCAATATTTCTGCAGAAAGAAAGTTTAGGgctGTGGGAGACCCATCTGCAGCAGTGATGCTGACCCGGAGCTGAAGGCTTTCTCTCCACAGCCTCTCGCTCAACTGTGCTTCACTTTGGCTCACAGAGTAACCTCAGACCTTCACCTCGTTCATCAGCATATATGCATCAACCCTCACTGCGTCTCTGACAGTGGAATATTGGAGGTCATCACAGGCTCGACGTGAATGCAGAACTGTCCACGTTTGCTTTCTAGATTCTTCCAACAACTGATGAggaaagcctcattcacactacaagcaaCTCACAGAGGCAAAGTGACAAGCGACCATTCATTTCAACAGAGAGCGTGCAACTTCCAGTGACCTCCGTCTACTCAAGCGACAGCGATCGTTGGCAACAAGGTGGGCGTGTCAAGGGACATGGCAGCGTTGAGAATGCTTAaactttatgcaaataaagagcgactttcttgagcgacaacCAATGGGAAcaccagtagagctcatgtgatcctctctcagctcgctcagaggctGGTTGTATTAGTGCTgtatagacctacacagacctgaaTTTGAAGCAGGTCGCCAACCAAAGCGACAGGCAGCTGCGAAGTCGCTGCTATTCTGAATAAGGCAAAAGGCagtgaaatgaataaatattggaCTATTGATAGTCATAAAGGAGATCACCTCGAATCTTCATCCAAAAGAAACAGTGAATGTGGCTGTGGTGTTAGAGGAAGGCGTTGTACGATGGCCTGAGTTATGTCAGATGACTTTGCTTTGCTAATAGGGTTTCTTCTTGCCCTGAATATCACTTATCTCAAGGAAATCCAATATACATTTCACATCCTCCAAAAAGATCCTGAAAATTGGTGGCTCTGTGATTCTTACTCTGTGAACTTGCAGTTGAACTTGAAGTGTTTAGTGGATTTTGCTCACCCATGCTCAAACTTATTGATAATCATGTTGTTCATTTAACTTTAAGATTAAGCAACTCATTATATTTGATTGAGATATATTTCTTAAAGAAAAGGGTATCATTTGTTGGATGATAAGCAACTTTATTGTAAGTGATTATGTTTTTCTTGTTCTCGCATTACACTTCATATTACACAATAGCAGACATTCTGTTACACACACTCTATATCAACTCTGTCTGCTACAATTGCTGTTTAACAAAAAATCAACAAGTCAGAAGTCTCAAGAAACACTAAAATGCAGTTCTTAAACAGCATTAAAATGAaccttttcaaatgttttttcgTCTATTCAACATTTTAAAGGCTTACAACAattcataatattttataataaaaagtgTGTTTACAATTGTTCTGCAACATATTCAAATAGACATTCTGTTACAGAAATTCTGTACAAACTCGTGTTGTGTTGAACTGCAATTCTAGCAGACTGTTTTATACGTAACTCAAAGAGAGTGATGTGAATTGTTTAATATGAAGTGTAATGCGAGAACAAGAATCACCACTAACATTAAAGTTGCTTATCATCAAACACATTTTCTCCTTTTCATTAAGAGTAAGCAACAAGTTACACTGGATTGAGATTTCTTTCACTTTCTGGAAAATGGGCCGGTCATGTACAATTCGATGATGGAGGCATCGAGATCTGAAAGAAAAAGGACTGATaaacaacaaagaaaagaaaaactattGTATGAATCTCTGGGAAAGTGAAAAAAAAGACTTTGGCAAAAGGTTGGAGTGATATCGAAGAAAAGTAAGGAAAAACATTAAGCGAAGATCTGGGAAAAACTATGTGAATTTCAAAGCGACAACACTAGCTATGTTTGAAAGAAAGGCAATACCTGACAGATCCCAGTAAAGCAATCTGAGAGACTGGTAAAACTTCTTGACTTGATTCACTGATGATAGACATTTAAATTGTTTGAAGGAAGAATGTTATTTAATCAGACTGATCAACGACACAAGATAAATGATTAAAGCACACTCGATCACACTCGATTAAACAAGACTCGAGTCATTGAGTAACATACTGGAAGGAAGACATAAAGAGATTCTAATTTATACACTTAAAATCCCTTGCTATAATTAGTAGAAATATTTAACTTGAAAACGTAGccaaataaaaatacaagaatATAATATTTCCAGAAATGGGCGCTGAatattttcattaacattttttgTGCAATAGGCAAGGCATGGAGGGGCCCTTTAGAGAAGGAAGGCTTTCCCTTcactttaaaaatttatttaacactTCATGGTTTGGAGAccttttttgttatgttttttaagTGGTTCAAGAtattcatgtttgtgtttttcattttCCGGTCACAGTGATCTTCGCAATAACATCTGATTATAGTATATGCAAAAACAGGAATATAGAGTAATTACTTTGAATATTAATGGGTTACTAAATTAATGGGCTACCAATAATAAAAACTATGTGAATTTCAAAGTGACAACACTAGCTCTGTTTGAAAGAAAGGCAAAACCTGACAGATCCTAACAAAGCATTCTGAGAGACTGGTAAAACTTCTTGAATATGTTTTTACCAGTGTAGAATATGTTTAAAGGGCatctaggttaccccttttttcagatttaatataagtcttttgcgtctctagaatgtgtatataaagtttcagatcaaaatacccatcagatttttcattataccttttacaagatgctgttttatactgatttccagcagggggtggttttgtcgaactgcgcctttaagacgagtctttcccgcccactatttctacatgcctcctccctcagctgacttaaaggaagaaggtctcaggTAGCGTTtttgagatactacagtaagaactaacctttactaatcagtattgtgaacacaCGCACACCACAGATgacacgcacgcacg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058221 False 2674 lncRNA 0.36 2 28624869 28627715
TCONS_00057359 False 3014 lncRNA 0.36 2 28624869 28628533
TCONS_00058222 True 3382 lncRNA 0.38 5 28624869 28632583

Neighbor

gene id symbol gene type direction distance location
XLOC_028825 FO704886.1 coding downstream 82734 28542021 ~ 28542135 (-)
XLOC_028824 CU694442.2 coding downstream 192424 28432331 ~ 28432445 (-)
XLOC_028823 tprkb coding downstream 249742 28371732 ~ 28375127 (-)
XLOC_028822 trmu coding downstream 271331 28338642 ~ 28353538 (-)
XLOC_028821 celsr1a coding downstream 289685 28190013 ~ 28335184 (-)
XLOC_028827 NA coding upstream 86646 28719229 ~ 28728040 (-)
XLOC_028828 NA coding upstream 121359 28753942 ~ 28755703 (-)
XLOC_028829 BX088538.1 coding upstream 197311 28829894 ~ 28859815 (-)
XLOC_028830 zgc:174315 coding upstream 318975 28951558 ~ 28958601 (-)
XLOC_028831 si:dkey-23a23.2 coding upstream 400060 29032643 ~ 29050583 (-)
XLOC_028817 CR751234.1 non-coding downstream 1483566 27141179 ~ 27141303 (-)
XLOC_028814 NA non-coding downstream 1785261 26839078 ~ 26839608 (-)
XLOC_028813 NA non-coding downstream 1859059 26752348 ~ 26765810 (-)
XLOC_028832 NA non-coding upstream 507162 29139745 ~ 29142726 (-)
XLOC_028833 NA non-coding upstream 513522 29146105 ~ 29147779 (-)

Expression


Co-expression Network