XLOC_028828


Basic Information

Item Value
gene id XLOC_028828
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 28753942 ~ 28755703 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058225
GTCGAAGTCACAAGAGGGAGAGATGAACAATTAGCTCAATTCCAGCCACGTTAATTATCAACAATGATGGAAGActtatatttatgcatatttaaGGAAGGCAGTTTCTGGAGGAAATGTGATGGTGGATTCGATTGGTTCTCATCTAAACTTAGCCTGAATAAAAGGACGAGCAGGAGCACTGATCAAGGCTTTTTGTGCCGCAATGACTGGTGTTATGCATTACCCTTGTTGGCCTTTGTGTTCCTCCAGCATTTTTCTGTTTTGCCCACCATTGAGCACTATGCAAGAGAGAGATTTAACTTTGTTTCGTATGTATAAAAACGTTTAACAATGTGATTAATGTTGTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058225 True 350 lncRNA 0.39 2 28753942 28755703

Neighbor

gene id symbol gene type direction distance location
XLOC_028827 NA coding downstream 25902 28719229 ~ 28728040 (-)
XLOC_028826 NA coding downstream 121359 28624869 ~ 28632583 (-)
XLOC_028825 FO704886.1 coding downstream 211807 28542021 ~ 28542135 (-)
XLOC_028824 CU694442.2 coding downstream 321497 28432331 ~ 28432445 (-)
XLOC_028823 tprkb coding downstream 378815 28371732 ~ 28375127 (-)
XLOC_028829 BX088538.1 coding upstream 74191 28829894 ~ 28859815 (-)
XLOC_028830 zgc:174315 coding upstream 195855 28951558 ~ 28958601 (-)
XLOC_028831 si:dkey-23a23.2 coding upstream 276940 29032643 ~ 29050583 (-)
XLOC_028832 NA coding upstream 384042 29139745 ~ 29142726 (-)
XLOC_028833 NA coding upstream 390402 29146105 ~ 29147779 (-)
XLOC_028817 CR751234.1 non-coding downstream 1612639 27141179 ~ 27141303 (-)
XLOC_028834 NA non-coding upstream 506260 29261963 ~ 29264454 (-)
XLOC_028836 NA non-coding upstream 949490 29705193 ~ 29707219 (-)

Expression


Co-expression Network