G989341


Basic Information

Item Value
gene id G989341
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 50120576 ~ 50121816 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1126121
tatggtggaaaataagtatttggtcacctacaaacaaacaagatttctggctctcacagacctgtaacttcttctttaagaggctcctctgtcctccactcgttacctgtattaatggcacctgtttgaacttgttatcagtataaaagacacctgtccacaacctcaaacagtcacactccaaactccactatggccaagaccaaaggacaccagaaacaaaattgtagacctgcaccaggctgggaagactgaatctgcaataggtaagcagcttggtttgaagaaatcaactgtgggagcaattattagtaaATGGacgacatacaagaccactgataatctccctcgatctggggctccacgcaagatctcaccccgtggggtcaaaaatgatcacaagaacggtgagcaaaaatcccagaaccacacggggggacctagtgaatgacctgcagagagctgggaccaaagtaacaaagcctaccatcagtaacacaatacgcagccagggactcaaatcctgcagtgccagacgtgtccccctgcttaagccagtacatgtccaggtccgtctgaagtttgctagagagcatttggatgatccagaagaagattgggagaatgtcatatggtcagatgaaaccaaaatataactttttggtaaaaactcaactcgtcgtgtttggaggacaaagaatgctgagttgcatccaaagaacaccatacctactgtgaagcatgggggtggaaacatcatgctttggggctgtttttctgcaaagggaccaggacgactgatccgtgtgaaggaaagaatgaatggggccatgtattgtgagattttgagtgaaaacctccttccatcagcaaggtcattgaagatgaaacgtggctgggtctttcagcatgacaatgatcccaaacaccgcccgggcaacgaaggagtggcttcgtaagaagcatttcaaggtcctggagtggcctagccagtctccagatctcaaccccatagaaaatctttggatggagttgaaagtccgtgttgcccagcaacagccccaaaacatcactgctctagaggagatctgcatggaggaatgggccaaaataccagcaacagtgtgtgaaaaccttgtgaagacttacagaaaacgtttgacctctgtcattgccaacaaagggtatataacaaagttttgagataaacttttgttattgaccaaatacttattttccaa
>TU1126120
tatggtggaaaataagtatttggtcacctacaaacaaacaagatttctggctctcacagacctgtaacttcttctttaagaggctcctctgtcctccactcgttacctgtattaatggcacctgtttgaacttgttatcagtataaaagacacctgtccacaacctcaaacagtcacactccaaactccactatggccaagaccaaaggacaccagaaacaaaattgtagacctgcaccaggctgggaagactgaatctgcaataggtaagcagcttggtttgaagaaatcaactgtgggagcaattattagtaaATGGacgacatacaagaccactgataatctccctcgatctggggctccacgcaagatctcaccccgtggggtcaaaaatgatcacaagaacggtgagcaaaaatcccagaaccacacggggggacctagtgaatgacctgcagagagctgggaccaaagtaacaaagcctaccatcagtaacacaatacgcagccagggactcaaatcctgcagtgccagacgtgtccccctgcttaagccagtacatgtccaggtccgtctgaagtttgctagagagcatttggatgatccagaagaagattgggagaatgtcatatggtcagatgaaaccaaaatataactttttggtaaaaactcaactcgtcgtgtttggaggacaaagaatgctgagttgcatccaaagaacaccatacctactgtgaagcatgggggtggaaacatcatgctttggggctgtttttctgcaaagggaccaggacgactgatccgtgtgaaggaaagaatgaatggggccatgtattgtgagattttgagtgaaaacctccttccatcagcaaggtcattgaagatgaaacgtggctgggtctttcagcatgacaatgatcccaaacaccgcccgggcaacgaaggagtggcttcgtaagaagcatttcaaggtcctggagtggcctagccagtctccagatctcaaccccatagaaaatctttggatggagttgaaagtccgtgttgcccagcaacagccccaaaaca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1126121 False 1241 TUCP 0.45 1 50120576 50121816
TU1126120 True 1069 lncRNA 0.46 1 50120748 50121816

Neighbor

gene id symbol gene type direction distance location
LOC110535850 LOC106580015 coding downstream 111512 50001622 ~ 50009236 (-)
LOC110535048 LOC106580018 coding downstream 158002 49948883 ~ 49962746 (-)
LOC110535846 LOC106580019 coding downstream 210813 49904325 ~ 49909935 (-)
LOC110535845 LOC106580020 coding downstream 245696 49869804 ~ 49875052 (-)
LOC118937452 NA coding downstream 255821 49863907 ~ 49864927 (-)
LOC110535854 LOC106579997 coding upstream 125 50121941 ~ 50130448 (-)
LOC110535869 LOC106585426 coding upstream 18557 50140373 ~ 50147956 (-)
LOC110535868 NA coding upstream 26630 50148446 ~ 50157536 (-)
LOC110535863 NA coding upstream 36682 50158498 ~ 50168194 (-)
LOC118936269 LOC106579993 coding upstream 89935 50211751 ~ 50365331 (-)
G989339 NA non-coding downstream 314 50116736 ~ 50120434 (-)
G989367 NA non-coding downstream 13952 50106567 ~ 50106796 (-)
G989366 LOC106579992 non-coding downstream 14529 50104947 ~ 50106219 (-)
G989365 NA non-coding downstream 16716 50103425 ~ 50104032 (-)
G989364 NA non-coding downstream 17357 50103116 ~ 50103391 (-)
G989382 NA non-coding upstream 49543 50171359 ~ 50171767 (-)
G989391 NA non-coding upstream 57927 50179743 ~ 50180026 (-)
G989392 NA non-coding upstream 58821 50180637 ~ 50180848 (-)
G989408 NA non-coding upstream 81412 50203228 ~ 50203583 (-)
G988700 NA other downstream 609315 49509228 ~ 49511433 (-)
G987496 NA other downstream 1521338 48598493 ~ 48599410 (-)
G985835 NA other downstream 3060085 47059383 ~ 47060663 (-)
G985699 LOC106613263 other downstream 3319656 46793282 ~ 46801092 (-)
G989343 NA other upstream 9513 50131329 ~ 50132173 (-)
G989880 LOC106579995 other upstream 501614 50623430 ~ 50624105 (-)
G990411 NA other upstream 918964 51040780 ~ 51044308 (-)
LOC118937364 LOC106585457 other upstream 1242434 51364250 ~ 51370212 (-)
specc1la specc1l other upstream 1393730 51492045 ~ 51523279 (-)

Expression


Co-expression Network