XLOC_028832


Basic Information

Item Value
gene id XLOC_028832
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 29139745 ~ 29142726 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055857
atgcATACTTTGGCTACAATTATGACCTCACAAGAGCCTTGAGTTCTTTAAGccattcacagaaaaaaaattaaaactattgttgTTTTTAGAACCTgtcaataattatatttatttttctgtaaaagGCAAACTTCACAACATGATGACTCTGGGCTCTGTGATGTAAAAGAGAAAATTGAGGAGCTTCTACTAGCATTTGAAGGTCTACCTGCCATGTCAGCTAAACTGAGAGAGCTGTGCAAATGCCTCACAGAACGGCAAAGTGAGGTTCTGAGAACATCGTTCAAGTGCTGTGTGTTCAGAGGAGTGATGGACAGTCCTGTCTCGGTGCTGTTGTAGCCTTATTGGCTGTCGACAATGCATAGAGGCAGTAGTGGACGAGGGCTAAGCCTGTATAAAATGCAGGTCTGCAGTGTCAAGAGATTTTATTGTGGTTGTGGCTGGCTTGTCTGAGGTCCTGAGTATCATTAAGGCCTTAGACAAGCAGTACAACTCCTGTTGAAGCTGTCAACTGAACCCTCCAAGCTGATGTCTGGGTCTGGCAAGAGCACATTTTGATTAGAAGGAATCATTTAATTCGGTTTGgccatttgcatttttttaatgcttttcctattaaaagcttgactcttctgttgtGACATTGTGTTCTAGATGGGAACTTTTCATTTTGTCAATCTTGTAGTCTGATATGGCTAGGATCTGTAGTCTTCTTTCAGtgtaatcaaggaactttgctgctgttcCATGATTGTAACAGGTGTAATATTACGCAATGCTGTTACCTAGCTGGGAACAATTTTTAAGTGCTGTATGTTTCTTTTGCTAcagccatggtatggcagcaaaatACTTTCAAAATTAAGCTGGAATGTGTATAGAacctagccatatcagcctagaaaaaaAACTACCATGTGATGACATATGTCAAACTCTAAATGGGAAAGtcagaacttttttttaattagcaagaTGCTATtgcaataatctatgctaagctaaagccAACTCCCCCACCCcccttatttaaaatgttttgtattaGTTTGTATGCATGTTTATATGCAGTTTACACAATACAGTACGTTAGTGTTATTACTACCTTTTTCATACATTTTGTGATTCAAAGACAATGTTTTAAACATTCTGTTGGCATGtttgagaataaaaaaaactttcattgaaT

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0042391 regulation of membrane potential biological_process
GO:0048468 cell development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0006936 muscle contraction biological_process
GO:0030154 cell differentiation biological_process
GO:0006941 striated muscle contraction biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0048513 animal organ development biological_process
GO:0003143 embryonic heart tube morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0008015 blood circulation biological_process
GO:0003008 system process biological_process
GO:0003012 muscle system process biological_process
GO:0003013 circulatory system process biological_process
GO:0003015 heart process biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0001947 heart looping biological_process
GO:0060047 heart contraction biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0042383 sarcolemma cellular_component
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0045121 membrane raft cellular_component
GO:0098857 membrane microdomain cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0005901 caveola cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0044853 plasma membrane raft cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030054 cell junction cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055857 True 1192 lncRNA 0.38 2 29139745 29142726

Neighbor

gene id symbol gene type direction distance location
XLOC_028831 si:dkey-23a23.2 coding downstream 89162 29032643 ~ 29050583 (-)
XLOC_028830 zgc:174315 coding downstream 181144 28951558 ~ 28958601 (-)
XLOC_028829 BX088538.1 coding downstream 279930 28829894 ~ 28859815 (-)
XLOC_028828 NA coding downstream 384042 28753942 ~ 28755703 (-)
XLOC_028827 NA coding downstream 411705 28719229 ~ 28728040 (-)
XLOC_028833 NA coding upstream 3379 29146105 ~ 29147779 (-)
XLOC_028834 NA coding upstream 119237 29261963 ~ 29264454 (-)
XLOC_028835 BX248122.1 coding upstream 510770 29653496 ~ 29683905 (-)
XLOC_028836 NA coding upstream 562467 29705193 ~ 29707219 (-)
XLOC_028837 si:dkey-191j3.1 coding upstream 610621 29753347 ~ 29753895 (-)
XLOC_028826 NA non-coding downstream 507162 28624869 ~ 28632583 (-)
XLOC_028825 FO704886.1 non-coding downstream 597610 28542021 ~ 28542135 (-)
XLOC_028840 NA non-coding upstream 678594 29821320 ~ 29821700 (-)
XLOC_028842 NA non-coding upstream 822552 29965278 ~ 29967134 (-)

Expression


Co-expression Network