XLOC_028833


Basic Information

Item Value
gene id XLOC_028833
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 29146105 ~ 29147779 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057360
GCCgagcggaggcggaacagggggaggaCCTGGAGTAATGCGGGTCAAGCCGGCAGAGCTGGAGGCTTGTGGGGAGCTGGCAGAGCGAGCcatctgggtggcgccggcagggcgagtaGTCTGGCTAGGATCGCCAAGGCGAGGAGCTGTGGCCGTTCGGGAAGCTTAGGAGGCGGCGGCccttcgggaagctcaggcggcagcGACTCTGGCAGCGGCGTCGACTCTAGCTGCGGCGTCAACTCTGGCTAGGGCACTGGCTGCGGCGGAtactctggctgaggcgctggttGCGGCggcgactctggctgcggcgtcgactctggctgaggcgctggctgagGCGTCGACTCTTAAAATGTTACCAGTGAAACCTAAAGTGACCTAATGGGGACTTAATGTATGGAAAGTCTTAAAGATATTGAAATGTACTTTAATTGCTCTATTTAACCTGTTAAAATAACTACTTTTGATGGGTACAttgtgcttttgtgtgttttCACAGAACTATTTTCCTTGGTCAGCTGGAGGGGGAAAAATTGTGCAGGAAAAGGAATTGATTATTCCCTTTGAGAAAACTGACGCCTGTTTATCTGCCATGAAACTAAAAGTGAAGGAACCCTGGCATAAGAGGTTCGTCTTATTGGAAACAGAACTCTACGCGAATCTTTGCAATGACTGA
>TCONS_00057361
GCCgagcggaggcggaacagggggaggaCCTGGAGTAATGCGGGTCAAGCCGGCAGAGCTGGAGGCTTGTGGGGAGCTGGCAGAGCGAGCcatctgggtggcgccggcagggcgagtaGTCTGGCTAGGATCGCCAAGGCGAGGAGCTGTGGCCGTTCGGGAAGCTTAGGAGGCGGCGGCccttcgggaagctcaggcggcagcGACTCTGGCAGCGGCGTCGACTCTAGCTGCGGCGTCAACTCTGGCTAGGGCACTGGCTGCGGCGGAtactctggctgaggcgctggttGCGGCggcgactctggctgcggcgtcgactctggctgaggcgctggctgagGCGTCGACTCTTAAAATGTTACCAGTGAAACCTAAAGTGACCTAATGGGGACTTAATGTATGGAAAGTCTTAAAGATATTGAAATGTACTTTAATTGCTCTATTTAACCTGTTAAAATAACTACTTTTGATGGGTACAttgtgcttttgtgtgttttCACAGAACTATTTTCCTTGGTCAGCTGGAGGGGGAAAAATTGTGCAGGAAAAGGAATTGATTATTCCCTTTGAGAAAACTGACGCCTGTTTATCTGCCATGAAACTAAAAGTGAAGGAACCCTGGCATAAGAGTCTGAACAGCAAGCAAGTATGGCTTGGTAATGAGTGTAAGACCTGCATGCCGCCGACCAACCACTATTCCCTGAGTGAGGgttctgctgtcatctttaagGTTCGTCTTATTGGAAACAGAACTCTACGCGAATCTTTGCAATGA

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0044091 membrane biogenesis biological_process
GO:0042391 regulation of membrane potential biological_process
GO:0048741 skeletal muscle fiber development biological_process
GO:0048468 cell development biological_process
GO:0048747 muscle fiber development biological_process
GO:0022607 cellular component assembly biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0030154 cell differentiation biological_process
GO:0001765 membrane raft assembly biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0007271 synaptic transmission, cholinergic biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0031579 membrane raft organization biological_process
GO:0070836 caveola assembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0014902 myotube differentiation biological_process
GO:0014904 myotube cell development biological_process
GO:0007009 plasma membrane organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0045214 sarcomere organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0044854 plasma membrane raft assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0044857 plasma membrane raft organization biological_process
GO:0071709 membrane assembly biological_process
GO:0030029 actin filament-based process biological_process
GO:0003015 heart process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0016043 cellular component organization biological_process
GO:0042383 sarcolemma cellular_component
GO:0045121 membrane raft cellular_component
GO:0098857 membrane microdomain cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0005892 acetylcholine-gated channel complex cellular_component
GO:0005901 caveola cellular_component
GO:0005912 adherens junction cellular_component
GO:0005924 obsolete cell-substrate adherens junction cellular_component
GO:0005925 focal adhesion cellular_component
GO:0044853 plasma membrane raft cellular_component
GO:0070161 anchoring junction cellular_component
GO:0030054 cell junction cellular_component
GO:0030055 cell-substrate junction cellular_component
GO:0030056 hemidesmosome cellular_component
GO:0022848 acetylcholine-gated cation-selective channel activity molecular_function
GO:0030506 ankyrin binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function
GO:1904315 transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0005231 excitatory extracellular ligand-gated ion channel activity molecular_function
GO:0098960 postsynaptic neurotransmitter receptor activity molecular_function
GO:0099529 neurotransmitter receptor activity involved in regulation of postsynaptic membrane potential molecular_function
GO:0015464 acetylcholine receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057360 False 682 lncRNA 0.53 2 29146105 29147779
TCONS_00057361 True 778 lncRNA 0.53 3 29146109 29147779

Neighbor

gene id symbol gene type direction distance location
XLOC_028832 NA coding downstream 3379 29139745 ~ 29142726 (-)
XLOC_028831 si:dkey-23a23.2 coding downstream 95522 29032643 ~ 29050583 (-)
XLOC_028830 zgc:174315 coding downstream 187504 28951558 ~ 28958601 (-)
XLOC_028829 BX088538.1 coding downstream 286290 28829894 ~ 28859815 (-)
XLOC_028828 NA coding downstream 390402 28753942 ~ 28755703 (-)
XLOC_028834 NA coding upstream 114184 29261963 ~ 29264454 (-)
XLOC_028835 BX248122.1 coding upstream 505717 29653496 ~ 29683905 (-)
XLOC_028836 NA coding upstream 557414 29705193 ~ 29707219 (-)
XLOC_028837 si:dkey-191j3.1 coding upstream 605568 29753347 ~ 29753895 (-)
XLOC_028838 znf1119 coding upstream 610510 29758289 ~ 29769304 (-)
XLOC_028827 NA non-coding downstream 418065 28719229 ~ 28728040 (-)
XLOC_028826 NA non-coding downstream 513522 28624869 ~ 28632583 (-)
XLOC_028840 NA non-coding upstream 673541 29821320 ~ 29821700 (-)
XLOC_028842 NA non-coding upstream 817499 29965278 ~ 29967134 (-)
XLOC_028844 NA non-coding upstream 956406 30104185 ~ 30141117 (-)

Expression


Co-expression Network