XLOC_028835 (BX248122.1)


Basic Information

Item Value
gene id XLOC_028835
gene name BX248122.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 29653496 ~ 29683905 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055859
ATGaaaagtgatgtttttttttcagatctaattgaagagaatgaggggagtaaagaggaggaacatcatgtcaaaattgaggaaaaaactcatttacagactgagggtattttgaaaagtagagacgaaaatcgtttcacctgcactcaatgtggaaaaagttttggaagaaaaggctatcttaagattcacatgaggatccacactggagagaaaccattcacatgcattcagtgtgggaaaagtttcatcCGCTTATCatcccttaatatacacatgagaatccacactggagagaaaccattcacatgcactcggtgtggaaagagtttcagccactcatcatcccttaatcaccacatgataATCCACGCTGGAGAGAAACCTTCCACATGctcccagtgtgggaagagtttcagttgctcatctcaccttaatcaccacatgaggatccacactggagagaaaccattcacatgcactcagtgtgggaaaggttttagccaatcatcaccccttaataaacacatgaggatccacactggagagaaaccattctcatgcactcagtgtgggaacaGTTTCAGACACTCATTATCTCTTaaacaacacatgaggatccacactggagagaaaccattcacatgcactcagtgtgggaagagtttcggccaatcatcatcccttaatcaccacatgaggatccacactggagagaaaccattcacatgcactcagtgtgagaagagtttcagccaatcatcacactttaaccgacacatgaggatccacactggagagaaaccattcacatgtactcggtgtggaaagagtttcagccaCCAATTATCAGCCCTTAATCGCCACataaagatccacactggagagaaaccattcacatgcactctgtgtgggaagagttttaaatgtttgtcataccttaatgaacacatgaggatccactctggagagaaaccattcatatgcactcagtgtgggaagagtttcagccaatcatcacaccttaatcaccacatgagggtccacactggagagaaaccattcacatgcactcagtgtgggaagagtttcagccaatcatcaaaccttaataaacacatgagggtccacactggagagaaaccattcacatgcactcagtgtggaaagagtttcagccaatcattatcccttaatcaccacatgagggtccacagtggagagaaaccattcacgtgcactcagtgtgggaagagttttaactgctcatcacaccttaatcaacacatgagaatccacactggagagaaaccattcacttgcactcagtgtgggaggagtttcagtCAATCATCATCCCGTAATCTGcacatgatgagccacactggagagaaaccattctcatgcactcagtgtgggaaaagttttacctgctcatcataccttaatcgacacatgagggtccacactggaaaaaaacattcacatgcaatcagtgtgggaagagtttcagccaatcattaCACTTTAGTCAacacatga
>TCONS_00058231
CACATGCaggcagccaatcagctttcgCTGATCAGCGTGTAGGCAAATATCCCGCCCATAAGGCAGAGTCTTTGCTGTTTAATTCCGCTTATGTTACGGTCGTTGTGCGTCTAATTAAAtgaagctcctcctcctcctccggttCAGCTATAAACGCTGGAATATTCCCATCATGCTTCAGTGAAGAGTTTATTGCAGGACAGCGAGaacatgagtgatccagaaccctgcaaaattaaaaatgaagactCTGAACAACAAATAGatctaattgaagagaatgaggg
>TCONS_00058232
CACATGCaggcagccaatcagctttcgCTGATCAGCGTGTAGGCAAATATCCCGCCCATAAGGCAGAGTCTTTGCTGTTTAATTCCGCTTATGTTACGGTCGTTGTGCGTCTAATTAAAtgaagctcctcctcctcctccggttCAGCTATAAACGCTGGAATATTCCCATCATGCTTCAGTGAAGAGTTTATTGCAGGACAGCGAGaacatgagtgatccagaaccctgcaaaattaaaaatgaagactCTGAACAACAAATAGGATCAATAAAGCAATATCAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000112449

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055859 False 1542 mRNA 0.43 2 29653496 29676080
TCONS_00058231 False 287 lncRNA 0.44 3 29676034 29683905
TCONS_00058232 True 285 lncRNA 0.44 3 29682463 29683905

Neighbor

gene id symbol gene type direction distance location
XLOC_028834 NA coding downstream 389042 29261963 ~ 29264454 (-)
XLOC_028833 NA coding downstream 505717 29146105 ~ 29147779 (-)
XLOC_028832 NA coding downstream 510770 29139745 ~ 29142726 (-)
XLOC_028831 si:dkey-23a23.2 coding downstream 602913 29032643 ~ 29050583 (-)
XLOC_028830 zgc:174315 coding downstream 694895 28951558 ~ 28958601 (-)
XLOC_028836 NA coding upstream 21288 29705193 ~ 29707219 (-)
XLOC_028837 si:dkey-191j3.1 coding upstream 69442 29753347 ~ 29753895 (-)
XLOC_028838 znf1119 coding upstream 74384 29758289 ~ 29769304 (-)
XLOC_028839 si:ch211-231i17.3 coding upstream 136483 29820388 ~ 29821139 (-)
XLOC_028840 NA coding upstream 137415 29821320 ~ 29821700 (-)
XLOC_028829 BX088538.1 non-coding downstream 793681 28829894 ~ 28859815 (-)
XLOC_028828 NA non-coding downstream 897793 28753942 ~ 28755703 (-)
XLOC_028842 NA non-coding upstream 281373 29965278 ~ 29967134 (-)
XLOC_028844 NA non-coding upstream 420280 30104185 ~ 30141117 (-)
XLOC_028848 NA non-coding upstream 631898 30315803 ~ 30319511 (-)

Expression


Co-expression Network