XLOC_028838 (znf1119)


Basic Information

Item Value
gene id XLOC_028838
gene name znf1119
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 29758289 ~ 29769304 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055861
gacatgaCGTGACGTCATAAGGGTGCTCctgcgctgtgattcaactggagaaaggatagagtgtccaaacacagaggaaaaactcctgctgaagcgactgatctccacactgttataaagatggcgtttattaaagaggagagtgaagatgtgaagattgaagaaacattcacagtcaaacaggaagatctgcaggaacaaacagacctaattgaagagattgaagggagtaaagaggaggaacatcatgtcaaaattgaggaaaaaactcatttaaagactgatggtattttgaaaaggagagacaagaatcgttttatctgcactcagtgtggaaagagttttaagaaaaaaagcaatcttaagattcacatgatgattcacactggagagaaacctttcacatgcactcagtgtggaaagagttttagccTATCATCACACCTTactcaacacatgaggatccacactggagagaaaccattcacatgcactcagtgtgggaagagtttcagccaatcatcatcccttaatcaccacatgatgatccacactggagagaaaccattcacatgcactcagtgtgggagaagtttcagctgctcatcatcccttaataaacacatgaggatccacactggagagaaaccattcacatgcattcagtgtgggaagagtttcaggcagtcatcataccttaataaacacacgaggatccacagtggagagaaacctttcacatgcactcagtgtgggaagagtttcagccaatcatcacaccttaataaacacatgaggatccacagtggagagaaaccattcacatgctctcagtgtgggaagagtttcagccaatcatcatcccgtAATGTACACTTGAGGatgcacactggagagaaacctaacaacagaattttgcatgctcaaactctagtgtgactgcagcttcggtgtgggatgaGTATCAGCAACTCctcaaaccttaatgaacacatgaagatccacactggtgtgaaagagtatatgtgcttgagtgtgagaagacttttcttACAGCTCCAAAATTGAAATTGCACCAGATGATTCACATTGGAGAGATTGTACAAGTGTTCACAATGTGACAAGAGGTTTCATCAGTTAACACCTCTGAAAACACAAAAGTGGATGCACACTTGAGAGAAACTGTACAGATCTcatcagtgtctacagagttttgCTCATTTCTGAAttatgtttgaaaaggctgagtgacgtatactgttttccaacactcctacactgcagtaggtggggttgtgAGGGTGTTGCGCTCCTCTCATTTACCGTAAACACAATATTGGCGGCTGAAataagaacagtttcataaacatctggccaACAGCACCTCTGCAGCTTAAGATCTCATTGCAagtgcggatacatctgtactctactctcca

Function

symbol description
znf1119 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110914-42 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

Ensembl:

ensembl_id ENSDARG00000116181

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055861 True 1439 mRNA 0.42 3 29758289 29769304

Neighbor

gene id symbol gene type direction distance location
XLOC_028837 si:dkey-191j3.1 coding downstream 4394 29753347 ~ 29753895 (-)
XLOC_028836 NA coding downstream 51070 29705193 ~ 29707219 (-)
XLOC_028835 BX248122.1 coding downstream 74384 29653496 ~ 29683905 (-)
XLOC_028834 NA coding downstream 493835 29261963 ~ 29264454 (-)
XLOC_028833 NA coding downstream 610510 29146105 ~ 29147779 (-)
XLOC_028839 si:ch211-231i17.3 coding upstream 51084 29820388 ~ 29821139 (-)
XLOC_028840 NA coding upstream 52016 29821320 ~ 29821700 (-)
XLOC_028841 si:ch211-231i17.4 coding upstream 59364 29828668 ~ 29833326 (-)
XLOC_028842 NA coding upstream 195974 29965278 ~ 29967134 (-)
XLOC_028843 si:rp71-7l19.2 coding upstream 276189 30045493 ~ 30057608 (-)
XLOC_028832 NA non-coding downstream 615563 29139745 ~ 29142726 (-)
XLOC_028829 BX088538.1 non-coding downstream 898474 28829894 ~ 28859815 (-)
XLOC_028844 NA non-coding upstream 334881 30104185 ~ 30141117 (-)
XLOC_028848 NA non-coding upstream 546499 30315803 ~ 30319511 (-)
XLOC_028851 CR383668.2 non-coding upstream 594458 30363762 ~ 30364502 (-)

Expression


Co-expression Network