G991025 (LOC106579971)


Basic Information

Item Value
gene id G991025
gene name LOC106579971
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 51348508 ~ 51352137 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1128003
TACACATTAAGTTTTATTGTAACAAAACAAGTTGTACACCTTTAAGTTTAAAACAGATGATTATTTCCCCCCAGCGGAAAATAAAACAGTGATTAGATGTAAATTCCATGAGATAACAGGTTGTTTTCCATGAAGCAGTGGGGGGCCCAAATTTACAAGCATTTTTTTaaagttttgttttgtttattaaaaATGTACTTTCACATCTCATGGATGTctgtaaaacaataaaaaaaaagatatagtAATGGTGTCAAAATGCCCACCCACCTCAGCACCCCAAGATATCCCTTTACCCTACCCCAGCATTGACCCCAAACATTACAAGTGATGGGAATAAGCTGGTATTTTCTGTTAACTTTTAACCACATAAGGGGGGGTGGCATTATTTGCAGGGATCTACTCGCcaactgaacaaaattataaaaacTATAGAGGGGGTCTGCTAGCGCTAGGTCACTGCACCATGGCTTTTATTCATTTATCACAACCTTTAACTGCAagaaaattatatatataaattGCTATTTAATTCTACTCAAGATGGCATGCTGATTCTATTTTTTTGTAAGTTTTTATTTTTCTTCAGATGAATTTGGGAATTGGGGTGGTACATACAATTCAAGGCAGGAATTTGCCATTGGTTTTTAGATGAGACAAAGAAACTTAACATGGCACAGACAGGAGTGAGGCTTCAGAATGAGACGACGAAgcacaaaataaaaatacaaaatcttGCTCCCAAATATGGGTGGATAACCAAATTGGGTGAAAATAGGAAAGGGTATTGGTAGATGTAATTTTTCAGTTTAGTCATCTTCTCCTTCATCATCCTAAACAAAATAAAgggagaaaaagaaaaaaaaatcagcaACACCATAATAACAAATCACACTATTCAATATAGCCAATTAAGCAATTATCTAGGGCATACCTCCCCATCATCTTCCTCTCCATCATCTTCCTCTCCATCATCTTCATCACCCTCCTCATCAATGTCCTCAAGACCTTCCTCGTCATCATCATCTTCACCTTCTGCTTCCTCATCATCCATGTCAGGAACCAGGTAGTACTGCAGGGGGTTTGGCCAGATGTCATCCTTGATGACCTCGCCCAGCTCATCTGCCCCAGCATCTGAGTGATCAGTGAACCAGGTGAAGAAGCTCTCTGGCTCTTCATGCTGCCTCTTCTTGCCGGCTTTATTCTGCGTCTGGCTGGAGCGCTTTGTCAGGTCCTTTCCTGATTTCCATTTTATTTCTGTTGACTTTGATGATGGGTCTCCACTCTCGTTCAGGTGGAACTCTTTGGAAAGGACTTTGTTTTCAAAGTATGGGTTTTCATCAAAATAAAAATCTATTCTGTAGCCTGACTTGATATCTTCAAACTCTGTAACCTccaccctgg
>TU1128004
TACACATTAAGTTTTATTGTAACAAAACAAGTTGTACACCTTTAAGTTTAAAACAGATGATTATTTCCCCCCAGCGGAAAATAAAACAGTGATTAGATGTAAATTCCATGAGATAACAGGTTGTTTTCCATGAAGCAGTGGGGGGCCCAAATTTACAAGCATTTTTTTaaagttttgttttgtttattaaaaATGTACTTTCACATCTCATGGATGTctgtaaaacaataaaaaaaaagatatagtAATGGTGTCAAAATGCCCACCCACCTCAGCACCCCAAGATATCCCTTTACCCTACCCCAGCATTGACCCCAAACATTACAAGTGATGGGAATAAGCTGGTATTTTCTGTTAACTTTTAACCACATAAGGGGGGGTGGCATTATTTGCAGGGATCTACTCGCcaactgaacaaaattataaaaacTATAGAGGGGGTCTGCTAGCGCTAGGTCACTGCACCATGGCTTTTATTCATTTATCACAACCTTTAACTGCAagaaaattatatatataaattGCTATTTAATTCTACTCAAGATGGCATGCTGATTCTATTTTTTTGTAAGTTTTTATTTTTCTTCAGATGAATTTGGGAATTGGGGTGGTACATACAATTCAAGGCAGGAATTTGCCATTGGTTTTTAGATGAGACAAAGAAACTTAACATGGCACAGACAGGAGTGAGGCTTCAGAATGAGACGACGAAgcacaaaataaaaatacaaaatcttGCTCCCAAATATGGGTGGATAACCAAATTGGGTGAAAATAGGAAAGGGTATTGGTAGATGTAATTTTTCAGTTTAGTCATCTTCTCCTTCATCATCCTCCCCATCATCTTCCTCTCCATCATCTTCCTCTCCATCATCTTCATCACCCTCCTCATCAATGTCCTCAAGACCTTCCTCGTCATCATCATCTTCACCTTCTGCTTCCTCATCATCCATGTCAGGAACCTGCCAATCAAATTAGCCAACATTTTAACTATACATTCTTCATCTACACAGGAGACTTAATCTCCTGGGTGACATCCAAAGAAGGAATAATAAAGTTGCACAATGGACATAAGTCAAAGAGCTGGTAACAAGTCCTATTCAAAATCAAGAGAACATCGATAACAGGGTGTGCTAGGCCTTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1128003 False 1404 lncRNA 0.39 4 51348508 51352137
TU1128004 True 1144 lncRNA 0.38 2 51350893 51352137

Neighbor

gene id symbol gene type direction distance location
fam102aa LOC106579973 coding downstream 44003 51281663 ~ 51304505 (-)
LOC110535883 LOC106579975 coding downstream 102586 51224185 ~ 51245922 (-)
sh3glb2a LOC106579977 coding downstream 124386 51206885 ~ 51224122 (-)
LOC110535879 LOC102784428 coding downstream 192168 51150393 ~ 51156340 (-)
LOC110535875 LOC106579981 coding downstream 198926 51135634 ~ 51149582 (-)
LOC118937364 LOC106585457 coding upstream 12619 51364250 ~ 51370212 (-)
mmp11a LOC106579968 coding upstream 58532 51410669 ~ 51423793 (-)
LOC110535893 NA coding upstream 77343 51429480 ~ 51434945 (-)
upb1 bup1 coding upstream 108301 51460438 ~ 51471151 (-)
LOC110535896 LOC106579963 coding upstream 122404 51474541 ~ 51481565 (-)
G991069 NA non-coding downstream 28276 51316762 ~ 51320232 (-)
G991065 NA non-coding downstream 36675 51311546 ~ 51311833 (-)
G991060 NA non-coding downstream 42525 51305517 ~ 51305983 (-)
G991028 NA non-coding downstream 69504 51275666 ~ 51279004 (-)
G991043 NA non-coding downstream 73552 51274311 ~ 51274956 (-)
G991099 LOC106579966 non-coding upstream 43968 51396105 ~ 51398110 (-)
G991108 NA non-coding upstream 57999 51410136 ~ 51410416 (-)
G991118 NA non-coding upstream 75077 51427214 ~ 51427564 (-)
G990411 NA other downstream 304200 51040780 ~ 51044308 (-)
G989880 LOC106579995 other downstream 724403 50623430 ~ 50624105 (-)
G989343 NA other downstream 1216335 50131329 ~ 50132173 (-)
G989341 NA other downstream 1226692 50120576 ~ 50121816 (-)
LOC110535846 LOC106580019 other downstream 1442256 49904325 ~ 49909935 (-)
specc1la specc1l other upstream 163409 51492045 ~ 51523279 (-)
G991349 NA other upstream 489929 51842066 ~ 51842522 (-)
ct030 LOC106579885 other upstream 3770373 55122507 ~ 55124484 (-)
adgra2 LOC106579839 other upstream 5338214 56690351 ~ 56787685 (-)

Expression


Co-expression Network