Gene
RNA
| Item | Value |
|---|---|
| gene id | G991349 |
| gene name | NA |
| gene type | unknown |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048575.1 |
| NCBI id | CM023229.2 |
| chromosome length | 86280908 |
| location | 51842066 ~ 51842522 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| homeobox protein cut-like 2 isoform X4 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1128391 | True | 309 | TUCP | 0.64 | 2 | 51842066 | 51842522 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110535906 | ppp1cc | coding | downstream | 127204 | 51704973 ~ 51714862 (-) |
| pptc7a | pptc7 | coding | downstream | 137562 | 51694687 ~ 51704504 (-) |
| apc7 | apc7 | coding | downstream | 174321 | 51666721 ~ 51667745 (-) |
| LOC110535900 | LOC106579959 | coding | downstream | 268993 | 51523480 ~ 51573073 (-) |
| specc1la | specc1l | coding | downstream | 318787 | 51492045 ~ 51523279 (-) |
| LOC110535055 | LOC106579949 | coding | upstream | 32383 | 51874905 ~ 51930736 (-) |
| rab35b | rab35 | coding | upstream | 129457 | 51971979 ~ 51984694 (-) |
| LOC110535056 | LOC106579947 | coding | upstream | 142784 | 51985306 ~ 52043206 (-) |
| pxnb | LOC106579946 | coding | upstream | 205955 | 52048477 ~ 52066662 (-) |
| ctu1 | ctu1 | coding | upstream | 225481 | 52068003 ~ 52071977 (-) |
| G991348 | cux2 | non-coding | downstream | 713 | 51840888 ~ 51841353 (-) |
| G991326 | NA | non-coding | downstream | 16491 | 51810186 ~ 51825575 (-) |
| G991187 | atp2a2 | non-coding | downstream | 180269 | 51658365 ~ 51661797 (-) |
| G991216 | NA | non-coding | downstream | 236475 | 51605351 ~ 51605591 (-) |
| G991351 | cux2 | non-coding | upstream | 964 | 51843486 ~ 51844146 (-) |
| G991352 | cux2 | non-coding | upstream | 1810 | 51844332 ~ 51844588 (-) |
| G991353 | cux2 | non-coding | upstream | 2229 | 51844751 ~ 51849561 (-) |
| G991332 | NA | non-coding | upstream | 30746 | 51873268 ~ 51874505 (-) |
| G991334 | NA | non-coding | upstream | 39182 | 51881704 ~ 51882863 (-) |
| LOC118937364 | LOC106585457 | other | downstream | 475649 | 51364250 ~ 51370212 (-) |
| G990411 | NA | other | downstream | 797758 | 51040780 ~ 51044308 (-) |
| G989880 | LOC106579995 | other | downstream | 1217961 | 50623430 ~ 50624105 (-) |
| G989343 | NA | other | downstream | 1709893 | 50131329 ~ 50132173 (-) |
| ct030 | LOC106579885 | other | upstream | 3279988 | 55122507 ~ 55124484 (-) |
| adgra2 | LOC106579839 | other | upstream | 4847829 | 56690351 ~ 56787685 (-) |
| G997269 | NA | other | upstream | 5096516 | 56939038 ~ 56941535 (-) |
| G997343 | NA | other | upstream | 5207453 | 57049975 ~ 57050306 (-) |
| LOC110536040 | LOC106579832 | other | upstream | 5247336 | 57088502 ~ 57096328 (-) |
